JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRAMEF1_chr1_12786397_12801628	0/0	a0018	474	1	1	0	0	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0019	474	1	0	0	0	1	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0020	474	1	0	0	1	0	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF1_chr1_12786397_12801628	0/0	a0021	474	1	0	0	0	1	0	copy fasta	PRAMEF1	chr1	12786397	12801628
PRAMEF20_chr1_13405450_13426328	0/0	a0001	475	321	83	37	147	16	38	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	1/0	a0002	475	106	5	36	54	2	8	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	a0003	475	4	4	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	a0004	475	2	0	0	0	0	2	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	a0005	475	2	0	0	1	0	1	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/1	a0006	475	1	0	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	a0007	475	1	1	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	a0008	475	1	1	0	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	a0009	475	1	0	0	0	0	1	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	a0010	475	1	0	0	1	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	a0011	475	1	0	1	0	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF20_chr1_13405450_13426328	0/0	a0012	475	1	0	0	1	0	0	copy fasta	PRAMEF20	chr1	13405450	13426328
PRAMEF25_chr1_13065774_13082884	0/0	a0001	478	50	4	10	33	0	3	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0002	478	40	6	7	16	4	7	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0003	478	20	4	7	9	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0004	478	15	0	4	10	0	1	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0005	478	6	2	0	2	0	2	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0006	478	4	4	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0007	478	3	0	0	3	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0008	478	2	0	2	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0009	22	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0010	478	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0011	478	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0012	478	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0013	478	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0014	478	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0015	478	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0016	478	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0017	430	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0018	478	1	0	0	1	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0019	478	1	0	0	0	0	1	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0020	478	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0021	478	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0022	478	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0023	228	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF25_chr1_13065774_13082884	0/0	a0024	478	1	1	0	0	0	0	copy fasta	PRAMEF25	chr1	13065774	13082884
PRAMEF26_chr1_13143907_13161009	0/1	a0001	478	145	26	33	68	6	11	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0002	478	49	2	6	40	0	1	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0003	478	9	2	2	4	0	1	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0004	478	5	2	1	0	0	2	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0005	478	3	0	0	3	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0006	478	3	3	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0007	478	2	2	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0008	478	2	0	0	2	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0009	478	2	1	1	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009
PRAMEF26_chr1_13143907_13161009	0/0	a0010	228	2	2	0	0	0	0	copy fasta	PRAMEF26	chr1	13143907	13161009