JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRDM5_chr4_120686915_120927726	0/0	a0004	630	1	0	0	1	0	0	copy fasta	PRDM5	chr4	120686915	120927726
PRDM6_chr5_123084241_123199266	1/0	a0001	595	172	44	27	77	4	19	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/1	a0002	598	63	27	24	2	1	8	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0003	595	56	5	14	33	1	3	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0004	598	6	5	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0005	598	3	3	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0006	598	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0007	595	2	0	1	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0008	597	2	2	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0009	595	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0010	595	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0011	595	1	0	0	1	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0012	595	1	0	0	0	0	1	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0013	595	1	1	0	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM6_chr5_123084241_123199266	0/0	a0014	597	1	0	1	0	0	0	copy fasta	PRDM6	chr5	123084241	123199266
PRDM7_chr16_90051566_90082331	0/1	a0001	492	143	20	40	49	11	22	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	1/0	a0002	492	90	54	11	12	0	12	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0003	492	85	2	7	65	3	8	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0004	492	28	6	2	18	0	2	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0005	492	18	0	16	2	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0006	108	9	8	0	0	1	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0007	492	2	0	0	0	0	2	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0008	492	2	2	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0009	492	2	0	0	1	0	1	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0010	492	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0011	492	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0012	278	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0013	492	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0014	492	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0015	492	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0016	492	1	0	0	0	0	1	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0017	492	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0018	492	1	0	1	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0019	492	1	1	0	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0020	492	1	0	0	1	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0021	492	1	0	0	0	1	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM7_chr16_90051566_90082331	0/0	a0022	492	1	0	1	0	0	0	copy fasta	PRDM7	chr16	90051566	90082331
PRDM8_chr4_80192503_80209329	1/1	a0001	689	413	87	67	199	14	44	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	a0002	689	3	3	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	a0003	689	2	2	0	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	a0004	689	1	0	0	1	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM8_chr4_80192503_80209329	0/0	a0005	689	1	0	1	0	0	0	copy fasta	PRDM8	chr4	80192503	80209329
PRDM9_chr5_23502609_23533093	0/1	a0001	894	282	51	49	139	10	32	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	1/0	a0002	894	47	5	4	36	1	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0003	922	19	6	5	6	1	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0004	922	4	0	3	0	0	1	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0005	922	4	3	1	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0006	950	4	4	0	0	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0007	810	4	0	0	4	0	0	copy fasta	PRDM9	chr5	23502609	23533093
PRDM9_chr5_23502609_23533093	0/0	a0008	894	3	0	0	0	3	0	copy fasta	PRDM9	chr5	23502609	23533093