JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRKD1_chr14_29571479_29932847	0/0	a0005	912	1	0	1	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	a0006	912	1	1	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	a0007	912	1	1	0	0	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD1_chr14_29571479_29932847	0/0	a0008	912	1	0	0	1	0	0	copy fasta	PRKD1	chr14	29571479	29932847
PRKD2_chr19_46669316_46722114	1/1	a0001	878	371	92	77	150	12	38	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	a0002	878	2	1	1	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	a0003	878	1	1	0	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	a0004	878	1	1	0	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	a0005	878	1	1	0	0	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	a0006	878	1	0	0	1	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD2_chr19_46669316_46722114	0/0	a0007	878	1	0	0	1	0	0	copy fasta	PRKD2	chr19	46669316	46722114
PRKD3_chr2_37245502_37329833	1/1	a0001	890	368	79	65	186	15	21	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	a0002	890	9	5	1	0	1	2	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	a0003	890	7	7	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	a0004	890	2	0	1	0	0	1	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	a0005	890	1	0	1	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKD3_chr2_37245502_37329833	0/0	a0006	890	1	1	0	0	0	0	copy fasta	PRKD3	chr2	37245502	37329833
PRKDC_chr8_47768111_47965136	1/1	a0001	4128	93	24	15	32	2	18	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0002	4128	51	16	12	16	1	6	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0003	4128	9	9	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0004	4128	5	4	1	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0005	4128	4	0	2	0	1	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0006	4128	4	2	0	0	0	2	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0007	4128	4	4	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0008	4128	4	4	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0009	4128	3	3	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0010	4128	3	3	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0011	4128	2	0	2	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0012	4128	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0013	4128	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0014	4128	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0015	4128	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0016	4128	1	0	0	0	0	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0017	4128	1	0	0	0	0	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0018	4128	1	0	1	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0019	4128	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0020	4128	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0021	4128	1	0	1	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0022	4128	1	0	0	0	0	1	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0023	4128	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0024	4128	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0025	4128	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0026	4128	1	0	0	1	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKDC_chr8_47768111_47965136	0/0	a0027	4128	1	1	0	0	0	0	copy fasta	PRKDC	chr8	47768111	47965136
PRKG1_chr10_51069487_52303350	0/0	a0001	686	61	42	14	0	1	4	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	a0002	686	2	0	1	0	1	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG1_chr10_51069487_52303350	0/0	a0003	686	1	0	1	0	0	0	copy fasta	PRKG1	chr10	51069487	52303350
PRKG2_chr4_81082375_81220222	1/1	a0001	762	250	90	54	80	2	22	copy fasta	PRKG2	chr4	81082375	81220222
PRKN_chr6_161342417_162732766	0/0	a0001	465	22	16	3	0	0	3	copy fasta	PRKN	chr6	161342417	162732766
PRKN_chr6_161342417_162732766	0/0	a0002	465	4	2	1	0	0	1	copy fasta	PRKN	chr6	161342417	162732766