JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PRSS56_chr2_232515388_232530716	0/0	a0005	603	3	0	0	3	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	a0006	603	2	2	0	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	a0007	603	1	1	0	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	a0008	603	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	a0009	603	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	a0010	50	1	0	0	0	0	1	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	a0011	603	1	0	1	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	a0012	603	1	1	0	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	a0013	603	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS57_chr19_680546_700452	0/1	a0001	282	376	86	76	154	18	41	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	a0002	282	45	10	1	31	0	3	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	a0003	282	16	0	0	16	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	1/0	a0004	282	2	0	1	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	a0005	282	1	0	1	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	a0006	282	1	0	1	0	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS57_chr19_680546_700452	0/0	a0007	282	1	0	0	1	0	0	copy fasta	PRSS57	chr19	680546	700452
PRSS58_chr7_142247143_142263058	0/1	a0001	241	398	84	77	178	18	40	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	a0002	241	6	5	1	0	0	0	copy fasta	PRSS58	chr7	142247143	142263058
PRSS58_chr7_142247143_142263058	0/0	a0003	241	1	1	0	0	0	0	copy fasta	PRSS58	chr7	142247143	142263058
PRSS8_chr16_31126433_31140727	1/1	a0001	343	301	86	72	98	14	29	copy fasta	PRSS8	chr16	31126433	31140727
PRSS8_chr16_31126433_31140727	0/0	a0002	343	1	0	0	0	0	1	copy fasta	PRSS8	chr16	31126433	31140727
PRTFDC1_chr10_24843614_24957606	1/1	a0001	225	334	90	55	141	10	36	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	a0002	225	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	a0003	225	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	a0004	225	1	0	0	1	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTFDC1_chr10_24843614_24957606	0/0	a0005	225	1	0	1	0	0	0	copy fasta	PRTFDC1	chr10	24843614	24957606
PRTG_chr15_55606544_55748152	1/1	a0001	1150	181	44	47	53	7	28	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0002	1150	65	22	10	26	1	6	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0003	1150	11	10	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0004	1150	11	0	5	0	5	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0005	1150	3	0	0	3	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0006	1150	3	3	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0007	1150	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0008	1150	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0009	1150	1	0	0	0	0	1	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0010	1150	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0011	1150	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0012	1150	1	0	0	0	1	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0013	1150	1	1	0	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0014	1150	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0015	1150	1	0	1	0	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTG_chr15_55606544_55748152	0/0	a0016	1150	1	0	0	1	0	0	copy fasta	PRTG	chr15	55606544	55748152
PRTN3_chr19_835999_853175	0/0	a0001	256	243	48	43	116	13	23	copy fasta	PRTN3	chr19	835999	853175
PRTN3_chr19_835999_853175	0/1	a0002	256	170	46	39	56	3	25	copy fasta	PRTN3	chr19	835999	853175
PRTN3_chr19_835999_853175	0/0	a0003	256	2	2	0	0	0	0	copy fasta	PRTN3	chr19	835999	853175
PRUNE1_chr1_151003449_151040713	1/1	a0001	453	322	83	68	106	18	45	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	a0002	453	69	0	3	65	0	1	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	a0003	453	11	11	0	0	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	a0004	453	2	0	0	2	0	0	copy fasta	PRUNE1	chr1	151003449	151040713
PRUNE1_chr1_151003449_151040713	0/0	a0005	453	2	0	1	1	0	0	copy fasta	PRUNE1	chr1	151003449	151040713