JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PTOV1_chr19_49846159_49865742	1/1	a0001	416	371	87	69	169	12	32	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	a0002	416	39	0	6	19	0	14	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	a0003	416	6	5	1	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	a0004	416	3	3	0	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	a0005	416	3	3	0	0	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	a0006	416	2	0	0	0	0	2	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	a0007	416	1	0	0	1	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTOV1_chr19_49846159_49865742	0/0	a0008	416	1	0	0	1	0	0	copy fasta	PTOV1	chr19	49846159	49865742
PTP4A1_chr6_63567480_63588588	1/1	a0001	173	360	88	64	152	14	40	copy fasta	PTP4A1	chr6	63567480	63588588
PTP4A2_chr1_31901421_31943368	1/1	a0001	167	354	92	62	146	16	36	copy fasta	PTP4A2	chr1	31901421	31943368
PTP4A3_chr8_141387021_141437454	0/1	a0001	173	322	84	68	121	12	36	copy fasta	PTP4A3	chr8	141387021	141437454
PTP4A3_chr8_141387021_141437454	0/0	a0002	170	1	0	0	1	0	0	copy fasta	PTP4A3	chr8	141387021	141437454
PTPA_chr9_129106415_129153946	1/1	a0001	323	291	92	50	103	14	30	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	a0002	323	40	0	3	31	0	6	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	a0003	323	3	0	3	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPDC1_chr9_94079464_94114853	1/1	a0001	808	371	76	67	173	13	40	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0002	808	25	0	0	25	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0003	808	6	6	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0004	808	3	3	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0005	808	1	0	0	0	0	1	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0006	808	1	0	0	0	0	1	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0007	808	1	1	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0008	808	1	1	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0009	808	1	0	0	0	1	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0010	808	1	0	1	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0011	808	1	0	0	1	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0012	808	1	1	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	a0013	808	1	0	0	1	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPMT1_chr11_47560599_47578461	1/1	a0001	201	396	86	72	182	14	40	copy fasta	PTPMT1	chr11	47560599	47578461
PTPN11_chr12_112413947_112514918	1/1	a0001	593	298	84	46	133	6	27	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	a0002	593	1	0	0	0	0	1	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	a0003	593	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN12_chr7_77532295_77645069	0/1	a0001	780	124	53	14	41	7	8	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	a0002	780	112	21	24	51	3	13	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	1/0	a0003	780	66	12	17	18	5	13	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	a0004	780	6	0	3	0	1	2	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	a0005	780	2	0	2	0	0	0	copy fasta	PTPN12	chr7	77532295	77645069
PTPN13_chr4_86589315_86820161	1/0	a0001	2485	62	6	12	37	4	2	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0002	2485	53	0	12	34	5	2	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/1	a0003	2485	43	28	7	7	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0004	2485	9	0	6	1	1	1	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0005	2485	4	0	0	4	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0006	2485	4	4	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0007	2485	4	4	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0008	2485	3	3	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0009	2485	2	0	0	2	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0010	2485	2	1	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0011	2485	1	0	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0012	2485	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	a0013	2485	1	0	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161