JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
PURG_chr8_31025850_31038356	0/0	a0003	347	1	0	0	1	0	0	copy fasta	PURG	chr8	31025850	31038356
PUS10_chr2_60935223_61023255	1/1	a0001	529	240	75	61	66	14	22	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	a0002	529	5	5	0	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS10_chr2_60935223_61023255	0/0	a0003	529	1	0	1	0	0	0	copy fasta	PUS10	chr2	60935223	61023255
PUS1_chr12_131924276_131950896	1/1	a0001	427	372	98	78	142	14	38	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	a0002	427	5	0	0	3	0	2	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	a0003	427	2	0	0	0	0	2	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	a0004	427	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	a0005	427	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS1_chr12_131924276_131950896	0/0	a0006	427	1	0	0	1	0	0	copy fasta	PUS1	chr12	131924276	131950896
PUS3_chr11_125888485_125908206	0/0	a0001	481	204	36	39	100	8	21	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	1/0	a0002	481	88	33	9	36	3	6	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/1	a0003	481	74	25	12	28	2	6	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	a0004	481	72	2	17	40	1	12	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	a0005	481	4	0	0	4	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	a0006	481	3	0	0	3	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	a0007	481	1	0	0	0	0	1	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	a0008	481	1	0	0	1	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	a0009	481	1	1	0	0	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	a0010	481	1	1	0	0	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS3_chr11_125888485_125908206	0/0	a0011	481	1	0	1	0	0	0	copy fasta	PUS3	chr11	125888485	125908206
PUS7L_chr12_43713992_43763790	1/0	a0001	701	184	41	31	73	10	28	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/1	a0002	701	103	41	21	32	1	7	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0003	701	3	3	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0004	701	2	0	0	0	2	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0005	701	2	0	0	2	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0006	701	2	0	0	0	1	1	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0007	701	2	2	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0008	701	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0009	701	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0010	701	1	0	1	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0011	701	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0012	473	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0013	701	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0014	701	1	0	0	1	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7L_chr12_43713992_43763790	0/0	a0015	701	1	1	0	0	0	0	copy fasta	PUS7L	chr12	43713992	43763790
PUS7_chr7_105451503_105527271	1/1	a0001	661	348	92	62	136	14	42	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	a0002	661	1	0	0	1	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUS7_chr7_105451503_105527271	0/0	a0003	661	1	0	0	1	0	0	copy fasta	PUS7	chr7	105451503	105527271
PUSL1_chr1_1303597_1316677	1/1	a0001	303	309	76	57	122	12	40	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	a0002	141	19	2	3	13	0	1	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	a0003	303	11	9	2	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	a0004	303	7	6	1	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	a0005	303	2	0	1	1	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	a0006	303	2	0	0	2	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	a0007	303	1	0	0	0	0	1	copy fasta	PUSL1	chr1	1303597	1316677
PUSL1_chr1_1303597_1316677	0/0	a0008	303	1	1	0	0	0	0	copy fasta	PUSL1	chr1	1303597	1316677
PVALB_chr22_36795703_36822035	0/1	a0001	110	417	89	82	185	16	44	copy fasta	PVALB	chr22	36795703	36822035
PVALB_chr22_36795703_36822035	0/0	a0002	110	3	3	0	0	0	0	copy fasta	PVALB	chr22	36795703	36822035
PVALB_chr22_36795703_36822035	0/0	a0003	110	1	0	0	1	0	0	copy fasta	PVALB	chr22	36795703	36822035