JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAB11FIP5_chr2_73068382_73117948	0/0	a0013	1322	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0014	1324	1	0	1	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0015	1324	1	0	0	0	0	1	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0016	1324	1	0	0	0	0	1	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0017	1324	1	0	1	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0018	1323	1	0	1	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0019	1322	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0020	1322	1	1	0	0	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0021	1322	1	0	0	1	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0022	1320	1	0	0	1	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB11FIP5_chr2_73068382_73117948	0/0	a0023	1322	1	0	0	1	0	0	copy fasta	RAB11FIP5	chr2	73068382	73117948
RAB12_chr18_8604437_8644383	1/1	a0001	340	401	96	71	178	14	40	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	a0002	340	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	a0003	340	1	0	1	0	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB12_chr18_8604437_8644383	0/0	a0004	340	1	0	0	1	0	0	copy fasta	RAB12	chr18	8604437	8644383
RAB13_chr1_153976650_153991339	1/1	a0001	203	403	84	73	188	14	42	copy fasta	RAB13	chr1	153976650	153991339
RAB13_chr1_153976650_153991339	0/0	a0002	203	3	0	0	3	0	0	copy fasta	RAB13	chr1	153976650	153991339
RAB13_chr1_153976650_153991339	0/0	a0003	79	1	0	0	1	0	0	copy fasta	RAB13	chr1	153976650	153991339
RAB13_chr1_153976650_153991339	0/0	a0004	203	1	0	1	0	0	0	copy fasta	RAB13	chr1	153976650	153991339
RAB14_chr9_121173133_121206869	1/1	a0001	215	384	88	72	172	16	34	copy fasta	RAB14	chr9	121173133	121206869
RAB15_chr14_64940816_64977336	1/1	a0001	212	381	92	55	172	18	42	copy fasta	RAB15	chr14	64940816	64977336
RAB15_chr14_64940816_64977336	0/0	a0002	212	1	0	1	0	0	0	copy fasta	RAB15	chr14	64940816	64977336
RAB17_chr2_237569326_237595734	1/0	a0001	212	198	18	38	101	13	27	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/1	a0002	212	94	15	13	61	0	4	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	a0003	212	57	13	8	25	0	11	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	a0004	212	38	34	4	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	a0005	212	26	8	7	4	1	6	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	a0006	212	9	9	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	a0007	212	1	0	0	1	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB17_chr2_237569326_237595734	0/0	a0008	212	1	1	0	0	0	0	copy fasta	RAB17	chr2	237569326	237595734
RAB18_chr10_27499304_27547239	1/1	a0001	206	396	83	75	178	16	42	copy fasta	RAB18	chr10	27499304	27547239
RAB18_chr10_27499304_27547239	0/0	a0002	206	14	13	1	0	0	0	copy fasta	RAB18	chr10	27499304	27547239
RAB19_chr7_140399058_140432974	1/1	a0001	217	400	92	67	193	13	33	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	a0002	217	40	3	9	8	3	17	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	a0003	171	1	0	0	1	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB19_chr7_140399058_140432974	0/0	a0004	217	1	1	0	0	0	0	copy fasta	RAB19	chr7	140399058	140432974
RAB1A_chr2_65081854_65135106	1/1	a0001	205	339	88	61	140	12	36	copy fasta	RAB1A	chr2	65081854	65135106
RAB1A_chr2_65081854_65135106	0/0	a0002	205	1	0	1	0	0	0	copy fasta	RAB1A	chr2	65081854	65135106
RAB1B_chr11_66263639_66282492	1/1	a0001	201	425	92	72	201	18	40	copy fasta	RAB1B	chr11	66263639	66282492
RAB1B_chr11_66263639_66282492	0/0	a0002	201	1	0	0	1	0	0	copy fasta	RAB1B	chr11	66263639	66282492
RAB20_chr13_110518066_110566722	1/1	a0001	234	408	84	76	190	12	44	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	a0002	234	17	15	2	0	0	0	copy fasta	RAB20	chr13	110518066	110566722
RAB20_chr13_110518066_110566722	0/0	a0003	234	1	1	0	0	0	0	copy fasta	RAB20	chr13	110518066	110566722
RAB21_chr12_71749863_71805286	1/1	a0001	225	370	88	60	174	9	37	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	a0002	225	4	4	0	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	a0003	225	4	0	3	0	1	0	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	a0004	225	1	0	0	0	0	1	copy fasta	RAB21	chr12	71749863	71805286
RAB21_chr12_71749863_71805286	0/0	a0005	225	1	0	1	0	0	0	copy fasta	RAB21	chr12	71749863	71805286
RAB22A_chr20_58304715_58372507	1/1	a0001	194	393	88	74	173	16	40	copy fasta	RAB22A	chr20	58304715	58372507
RAB22A_chr20_58304715_58372507	0/0	a0002	194	1	0	0	1	0	0	copy fasta	RAB22A	chr20	58304715	58372507