JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAD23B_chr9_107278279_107337189	0/0	a0003	409	1	1	0	0	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD23B_chr9_107278279_107337189	0/0	a0004	409	1	0	0	1	0	0	copy fasta	RAD23B	chr9	107278279	107337189
RAD50_chr5_132551977_132651349	1/1	a0001	1312	263	85	40	104	8	24	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	a0002	1312	2	2	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	a0003	1312	2	0	2	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	a0004	1312	2	0	0	0	0	2	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	a0005	1312	1	0	0	0	0	1	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	a0006	1312	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	a0007	1312	1	1	0	0	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	a0008	1312	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	a0009	1312	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	a0010	1312	1	0	0	1	0	0	copy fasta	RAD50	chr5	132551977	132651349
RAD50_chr5_132551977_132651349	0/0	a0011	1312	1	0	0	0	0	1	copy fasta	RAD50	chr5	132551977	132651349
RAD51AP1_chr12_4533890_4565047	1/1	a0001	335	269	69	63	86	8	41	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	a0002	335	9	9	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	a0003	335	7	7	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	a0004	335	2	0	1	0	0	1	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	a0005	335	2	2	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	a0006	335	1	0	1	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	a0007	335	1	1	0	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP1_chr12_4533890_4565047	0/0	a0008	335	1	0	1	0	0	0	copy fasta	RAD51AP1	chr12	4533890	4565047
RAD51AP2_chr2_17505579_17523440	0/0	a0001	1159	194	9	34	111	11	29	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	1/1	a0002	1159	151	74	28	35	3	9	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0003	1159	2	0	0	2	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0004	1159	2	1	0	0	1	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0005	1159	2	0	2	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0006	1159	2	1	0	0	0	1	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0007	1159	1	0	0	1	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0008	1159	1	1	0	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0009	1159	1	0	0	1	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0010	1159	1	1	0	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0011	1159	1	0	0	0	1	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0012	1159	1	1	0	0	0	0	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51AP2_chr2_17505579_17523440	0/0	a0013	1159	1	0	0	0	0	1	copy fasta	RAD51AP2	chr2	17505579	17523440
RAD51B_chr14_67814779_68483093	0/0	a0001	350	71	43	14	6	2	6	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	a0002	350	5	5	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	a0003	350	4	4	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	a0004	350	3	3	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51B_chr14_67814779_68483093	0/0	a0005	350	1	1	0	0	0	0	copy fasta	RAD51B	chr14	67814779	68483093
RAD51C_chr17_58687602_58740611	1/1	a0001	376	325	85	68	122	12	36	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	a0002	376	2	0	2	0	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	a0003	376	1	0	0	1	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	a0004	376	1	0	0	1	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51C_chr17_58687602_58740611	0/0	a0005	376	1	1	0	0	0	0	copy fasta	RAD51C	chr17	58687602	58740611
RAD51D_chr17_35087221_35124860	1/1	a0001	328	367	89	51	176	15	34	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	a0002	328	39	1	21	6	1	10	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	a0003	328	4	0	4	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	a0004	328	2	1	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	a0005	328	1	0	0	1	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	a0006	328	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860