JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAD51D_chr17_35087221_35124860	0/0	a0007	328	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51D_chr17_35087221_35124860	0/0	a0008	328	1	1	0	0	0	0	copy fasta	RAD51D	chr17	35087221	35124860
RAD51_chr15_40690174_40737340	0/0	a0001	339	389	88	70	171	12	48	copy fasta	RAD51	chr15	40690174	40737340
RAD51_chr15_40690174_40737340	0/0	a0002	339	1	0	0	1	0	0	copy fasta	RAD51	chr15	40690174	40737340
RAD52_chr12_906736_954694	1/1	a0001	418	377	83	69	174	12	37	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	a0002	414	7	0	7	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	a0003	345	6	0	0	3	0	3	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	a0004	418	4	4	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	a0005	418	3	3	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	a0006	418	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	a0007	418	1	0	0	1	0	0	copy fasta	RAD52	chr12	906736	954694
RAD52_chr12_906736_954694	0/0	a0008	418	1	1	0	0	0	0	copy fasta	RAD52	chr12	906736	954694
RAD54B_chr8_94366960_94480115	1/1	a0001	910	332	79	59	150	13	29	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0002	910	7	6	1	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0003	910	7	0	4	0	0	3	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0004	910	6	0	0	6	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0005	910	2	2	0	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0006	910	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0007	910	1	1	0	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0008	910	1	1	0	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0009	910	1	0	0	0	1	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0010	910	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0011	910	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0012	910	1	1	0	0	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54B_chr8_94366960_94480115	0/0	a0013	910	1	0	0	1	0	0	copy fasta	RAD54B	chr8	94366960	94480115
RAD54L2_chr3_51533719_51673660	1/1	a0001	1467	271	58	56	131	8	16	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	a0002	1467	2	0	1	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	a0003	1467	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	a0004	1467	1	0	1	0	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L2_chr3_51533719_51673660	0/0	a0005	1467	1	0	0	1	0	0	copy fasta	RAD54L2	chr3	51533719	51673660
RAD54L_chr1_46242763_46283473	1/1	a0001	747	320	89	63	121	13	32	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	a0002	390	3	0	0	2	0	1	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	a0003	747	2	0	0	2	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	a0004	747	1	0	1	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	a0005	747	1	1	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	a0006	747	1	0	0	0	1	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	a0007	747	1	1	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	a0008	747	1	0	0	1	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	a0009	747	1	0	0	0	0	1	copy fasta	RAD54L	chr1	46242763	46283473
RAD54L_chr1_46242763_46283473	0/0	a0010	747	1	1	0	0	0	0	copy fasta	RAD54L	chr1	46242763	46283473
RAD9A_chr11_67386986_67403410	1/1	a0001	391	343	95	68	136	12	30	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	a0002	391	10	0	0	10	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	a0003	391	2	0	0	0	0	2	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	a0004	391	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	a0005	391	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9A_chr11_67386986_67403410	0/0	a0006	391	1	1	0	0	0	0	copy fasta	RAD9A	chr11	67386986	67403410
RAD9B_chr12_110497331_110538556	1/1	a0001	417	243	71	51	75	14	30	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	a0002	417	36	14	0	18	0	4	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	a0003	417	2	2	0	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556
RAD9B_chr12_110497331_110538556	0/0	a0004	417	2	1	1	0	0	0	copy fasta	RAD9B	chr12	110497331	110538556