JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAET1E_chr6_149878179_149903113	1/0	a0003	263	59	2	19	24	5	8	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	a0004	263	56	14	15	13	3	11	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	a0005	263	46	36	4	3	0	3	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	a0006	263	16	16	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	a0007	263	9	9	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	a0008	1	4	4	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	a0009	263	4	1	1	0	0	2	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	a0010	263	1	0	1	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	a0011	263	1	0	0	1	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	a0012	263	1	1	0	0	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1E_chr6_149878179_149903113	0/0	a0013	263	1	0	0	1	0	0	copy fasta	RAET1E	chr6	149878179	149903113
RAET1G_chr6_149911878_149928121	1/1	a0001	334	298	81	61	104	13	37	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	a0002	334	135	8	13	98	3	13	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	a0003	334	8	0	8	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	a0004	334	3	3	0	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	a0005	334	3	0	0	3	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	a0006	334	2	2	0	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	a0007	334	2	0	0	2	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	a0008	334	2	1	1	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	a0009	334	1	1	0	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	a0010	334	1	0	1	0	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1G_chr6_149911878_149928121	0/0	a0011	334	1	0	0	1	0	0	copy fasta	RAET1G	chr6	149911878	149928121
RAET1L_chr6_150013334_150030532	1/0	a0001	246	147	16	13	103	3	11	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/1	a0002	246	127	12	25	61	6	22	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0003	246	126	32	31	43	8	12	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0004	246	12	11	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0005	246	12	0	0	10	0	2	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0006	246	9	3	3	0	1	2	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0007	246	5	5	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0008	112	5	5	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0009	246	3	3	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0010	246	3	2	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0011	246	2	1	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0012	246	2	2	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0013	246	2	2	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0014	246	2	1	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0015	246	2	1	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0016	46	2	0	0	1	0	1	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0017	246	1	0	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0018	246	1	1	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0019	246	1	0	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0020	246	1	0	0	1	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0021	246	1	0	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0022	246	1	0	1	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAET1L_chr6_150013334_150030532	0/0	a0023	246	1	1	0	0	0	0	copy fasta	RAET1L	chr6	150013334	150030532
RAF1_chr3_12578601_12669117	1/1	a0001	648	257	88	64	63	12	28	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	a0002	648	4	4	0	0	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAF1_chr3_12578601_12669117	0/0	a0003	648	1	0	0	1	0	0	copy fasta	RAF1	chr3	12578601	12669117
RAG1_chr11_36563007_36584762	1/0	a0001	1043	128	18	37	45	9	18	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0002	1043	128	54	21	40	4	9	copy fasta	RAG1	chr11	36563007	36584762