Joint Open Genome and Omics Platform (JoGo)

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geneid	5896
ensemblid	ENSG00000166349.11
hgncid	9831
symbol	RAG1
name	recombination activating 1
refseq_nuc	NM_000448.3
refseq_prot	NP_000439.2
ensembl_nuc	ENST00000299440.6
ensembl_prot	ENSP00000299440.5
mane_status	MANE Select
chr	chr11
start	36568007
end	36579762
strand	+
ver	v1.2
region	chr11:36568007-36579762
region5000	chr11:36563007-36584762
regionname0	RAG1_chr11_36568007_36579762
regionname5000	RAG1_chr11_36563007_36584762

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/0	1043	128	18	37	45	9	18	28	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002	0/0	1043	128	54	21	40	4	9	34	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0003	0/1	1043	110	11	12	72	1	13	56	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0004	0/0	1043	8	8	0	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0005	0/0	1043	5	5	0	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0006	0/0	1043	2	0	0	2	0	0	2	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0007	0/0	1043	2	0	0	2	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0008	0/0	1043	2	2	0	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0009	0/0	1043	1	0	0	0	0	1	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0010	0/0	1043	1	0	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0011	0/0	1043	1	0	0	1	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0012	0/0	1043	1	0	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0013	0/0	1043	1	0	0	0	0	1	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/0	3132	122	18	36	43	8	16	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0002	0/1	3132	110	11	12	72	1	13	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0003	0/0	3132	93	32	11	40	1	9	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0004	0/0	3132	26	14	9	0	3	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0005	0/0	3132	8	8	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0006	0/0	3132	7	6	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0007	0/0	3132	5	5	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0008	0/0	3132	3	0	1	0	1	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0009	0/0	3132	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0010	0/0	3132	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0011	0/0	3132	2	2	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0012	0/0	3132	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0013	0/0	3132	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0014	0/0	3132	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0015	0/0	3132	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0016	0/0	3132	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0017	0/0	3132	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0018	0/0	3132	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0019	0/0	3132	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
c0020	0/0	3132	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/1	3457	184	44	23	94	2	20	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0002	1/0	3457	125	17	35	44	9	19	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0003	0/0	3459	24	13	8	0	3	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0004	0/0	3456	9	0	0	8	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0005	0/0	3453	7	6	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0006	0/0	3457	7	7	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0007	0/0	3457	6	0	0	6	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0008	0/0	3457	4	0	0	4	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0009	0/0	3457	3	3	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0010	0/0	3458	3	0	1	2	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0011	0/0	3458	2	1	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0012	0/0	3457	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0013	0/0	3457	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0014	0/0	3457	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0015	0/0	3458	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0016	0/0	3456	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0017	0/0	3457	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0018	0/0	3457	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0019	0/0	3458	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0020	0/0	3457	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0021	0/0	3459	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0022	0/0	3457	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0023	0/0	3457	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0024	0/0	3457	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0025	0/0	3457	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
t0026	0/0	3458	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	255	49	56	110	13	25	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0002	0/0	45	0	11	26	0	8	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0003	0/0	10	9	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0004	0/0	9	8	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0005	0/0	9	0	0	8	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0006	0/0	6	6	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0007	0/0	6	6	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0008	0/0	5	0	0	5	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0009	0/0	5	5	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0010	0/0	4	4	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0011	0/0	3	3	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0012	0/0	2	0	0	1	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0013	0/0	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0014	0/0	2	2	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0015	0/0	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0016	0/0	2	0	0	0	0	2	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0017	0/0	2	2	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0018	0/0	1	0	0	0	1	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0019	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0020	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0021	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0022	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0023	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0024	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0025	0/0	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0026	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0027	0/0	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0028	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0029	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0030	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0031	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0032	0/0	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0033	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0034	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0035	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0036	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0037	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
g0038	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/0	3132	122	18	36	43	8	16	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0008	0/0	3132	3	0	1	0	1	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0009	0/0	3132	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0020	0/0	3132	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0003	0/0	3132	93	32	11	40	1	9	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0004	0/0	3132	26	14	9	0	3	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0006	0/0	3132	7	6	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0011	0/0	3132	2	2	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0003c0002	0/1	3132	110	11	12	72	1	13	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0004c0005	0/0	3132	8	8	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0005c0007	0/0	3132	5	5	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0006c0010	0/0	3132	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0007c0012	0/0	3132	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0008c0018	0/0	3132	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0008c0019	0/0	3132	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0009c0017	0/0	3132	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0010c0014	0/0	3132	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0011c0015	0/0	3132	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0012c0016	0/0	3132	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0013c0013	0/0	3132	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0002	1/0	6588	117	17	34	41	8	16	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0001t0010	0/0	6589	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0001t0013	0/0	6588	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0001t0017	0/0	6588	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0001t0018	0/0	6588	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0001t0022	0/0	6588	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0008t0002	0/0	6588	3	0	1	0	1	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0009t0002	0/0	6588	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0001c0020t0002	0/0	6588	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0003t0001	0/0	6588	75	27	11	28	1	8	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0003t0004	0/0	6587	9	0	0	8	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0003t0008	0/0	6588	4	0	0	4	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0003t0009	0/0	6588	3	3	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0003t0014	0/0	6588	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0003t0025	0/0	6588	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0004t0003	0/0	6590	24	13	8	0	3	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0004t0021	0/0	6590	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0004t0026	0/0	6589	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0006t0005	0/0	6584	7	6	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0002c0011t0001	0/0	6588	2	2	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0003c0002t0001	0/1	6588	101	10	12	65	1	12	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0003c0002t0007	0/0	6588	6	0	0	6	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0003c0002t0011	0/0	6589	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0003c0002t0016	0/0	6587	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0003c0002t0023	0/0	6588	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0004c0005t0006	0/0	6588	7	7	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0004c0005t0019	0/0	6589	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0005c0007t0001	0/0	6588	5	5	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0006c0010t0002	0/0	6588	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0006c0010t0010	0/0	6589	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0007c0012t0012	0/0	6588	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0008c0018t0015	0/0	6589	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0008c0019t0011	0/0	6589	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0009c0017t0002	0/0	6588	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0010c0014t0010	0/0	6589	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0011c0015t0001	0/0	6588	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0012c0016t0024	0/0	6588	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762
a0013c0013t0020	0/0	6588	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	copy fasta	chr11	36563007	36584762

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0002g0001	1/0	111	17	31	39	8	15	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0001t0002g0002	0/0	2	0	2	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0001t0002g0027	0/0	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0001t0002g0028	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0001t0002g0029	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0001t0002g0036	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0001t0010g0001	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0001t0013g0032	0/0	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0001t0017g0001	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0001t0018g0001	0/0	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0001t0022g0001	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0008t0002g0001	0/0	3	0	1	0	1	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0009t0002g0001	0/0	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0001c0020t0002g0001	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0001g0001	0/0	10	9	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0001g0002	0/0	39	0	9	22	0	8	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0001g0003	0/0	7	6	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0001g0006	0/0	6	6	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0001g0008	0/0	4	0	0	4	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0001g0010	0/0	4	4	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0001g0014	0/0	2	2	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0001g0018	0/0	1	0	0	0	1	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0001g0019	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0001g0037	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0004g0005	0/0	9	0	0	8	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0008g0002	0/0	4	0	0	4	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0009g0004	0/0	3	3	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0014g0034	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0003t0025g0011	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0004t0003g0001	0/0	22	12	7	0	3	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0004t0003g0025	0/0	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0004t0003g0030	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0004t0021g0001	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0004t0026g0001	0/0	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0006t0005g0004	0/0	6	5	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0006t0005g0022	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0002c0011t0001g0017	0/0	2	2	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0001	0/1	86	7	12	57	1	8	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0003	0/0	3	3	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0008	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0012	0/0	2	0	0	1	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0013	0/0	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0015	0/0	2	0	0	2	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0016	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0020	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0023	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0024	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0001g0038	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0007g0001	0/0	6	0	0	6	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0011g0001	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0016g0001	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0003c0002t0023g0016	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0004c0005t0006g0007	0/0	5	5	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0004c0005t0006g0011	0/0	2	2	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0004c0005t0019g0007	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0005c0007t0001g0009	0/0	5	5	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0006c0010t0002g0001	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0006c0010t0010g0001	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0007c0012t0012g0021	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0007c0012t0012g0035	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0008c0018t0015g0001	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0008c0019t0011g0026	0/0	1	1	0	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0009c0017t0002g0031	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0010c0014t0010g0001	0/0	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0011c0015t0001g0001	0/0	1	0	0	1	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0012c0016t0024g0001	0/0	1	0	1	0	0	0	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
a0013c0013t0020g0033	0/0	1	0	0	0	0	1	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0003	c0002	t0001	g0001	EUR	GBR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00099	hp2	a0001	c0001	t0002	g0001	EUR	GBR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00140	hp1	a0002	c0003	t0001	g0018	EUR	GBR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00140	hp2	a0001	c0001	t0002	g0001	EUR	GBR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00408	hp1	a0002	c0003	t0001	g0002	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00408	hp2	a0001	c0001	t0002	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00438	hp1	a0001	c0001	t0002	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00438	hp2	a0003	c0002	t0001	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00544	hp1	a0003	c0002	t0001	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00544	hp2	a0001	c0001	t0002	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00558	hp1	a0003	c0002	t0001	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00558	hp2	a0001	c0001	t0002	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00597	hp1	a0002	c0003	t0001	g0002	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00597	hp2	a0003	c0002	t0001	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00609	hp1	a0001	c0001	t0002	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00609	hp2	a0003	c0002	t0001	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00621	hp1	a0003	c0002	t0001	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00621	hp2	a0001	c0001	t0002	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00639	hp1	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00639	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00642	hp1	a0002	c0003	t0001	g0002	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00642	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00673	hp1	a0003	c0002	t0001	g0013	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00673	hp2	a0001	c0001	t0002	g0001	EAS	CHS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00733	hp1	a0002	c0003	t0001	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00733	hp2	a0002	c0004	t0003	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00735	hp1	a0003	c0002	t0001	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00735	hp2	a0002	c0004	t0003	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00738	hp1	a0002	c0004	t0003	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00738	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00741	hp1	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG00741	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01069	hp1	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01069	hp2	a0002	c0003	t0001	g0002	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01070	hp1	a0001	c0008	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01070	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01071	hp1	a0002	c0003	t0001	g0002	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01071	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01074	hp1	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01074	hp2	a0003	c0002	t0001	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01099	hp1	a0002	c0004	t0026	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01099	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01106	hp1	a0002	c0004	t0003	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01106	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01109	hp1	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01109	hp2	a0002	c0003	t0001	g0002	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01167	hp1	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01167	hp2	a0001	c0001	t0002	g0002	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01168	hp1	a0003	c0002	t0001	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01168	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01169	hp1	a0003	c0002	t0001	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01169	hp2	a0001	c0001	t0002	g0002	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01175	hp1	a0003	c0002	t0001	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01175	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01192	hp1	a0003	c0002	t0001	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01192	hp2	a0001	c0001	t0002	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01243	hp1	a0002	c0006	t0005	g0004	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01243	hp2	a0012	c0016	t0024	g0001	AMR	PUR	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01255	hp1	a0001	c0001	t0002	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01255	hp2	a0003	c0002	t0001	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01256	hp1	a0002	c0004	t0003	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01256	hp2	a0003	c0002	t0001	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01258	hp1	a0002	c0004	t0003	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01258	hp2	a0001	c0001	t0002	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01261	hp1	a0001	c0001	t0013	g0032	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01261	hp2	a0002	c0004	t0003	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01346	hp1	a0002	c0003	t0001	g0002	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01346	hp2	a0001	c0001	t0002	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01358	hp1	a0003	c0002	t0001	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01358	hp2	a0001	c0001	t0002	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01361	hp1	a0002	c0004	t0003	g0025	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01361	hp2	a0002	c0003	t0001	g0002	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01433	hp1	a0010	c0014	t0010	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01433	hp2	a0001	c0001	t0002	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01496	hp1	a0002	c0003	t0001	g0003	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01496	hp2	a0001	c0001	t0002	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01515	hp1	a0001	c0001	t0002	g0001	EUR	IBS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01515	hp2	a0001	c0001	t0002	g0001	EUR	IBS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01516	hp1	a0001	c0008	t0002	g0001	EUR	IBS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01516	hp2	a0002	c0004	t0003	g0001	EUR	IBS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01517	hp1	a0002	c0004	t0003	g0001	EUR	IBS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01517	hp2	a0001	c0001	t0002	g0001	EUR	IBS	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01884	hp1	a0002	c0003	t0009	g0004	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01884	hp2	a0001	c0001	t0002	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01891	hp1	a0001	c0001	t0002	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01891	hp2	a0003	c0002	t0001	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01934	hp1	a0001	c0001	t0002	g0001	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01934	hp2	a0003	c0002	t0001	g0001	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01978	hp1	a0002	c0003	t0001	g0002	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01978	hp2	a0001	c0001	t0002	g0001	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01981	hp1	a0003	c0002	t0001	g0001	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01981	hp2	a0001	c0001	t0002	g0027	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01993	hp1	a0001	c0001	t0018	g0001	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01993	hp2	a0003	c0002	t0001	g0001	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02004	hp1	a0001	c0001	t0002	g0001	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02004	hp2	a0001	c0001	t0002	g0001	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02055	hp1	a0005	c0007	t0001	g0009	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02055	hp2	a0003	c0002	t0001	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02056	hp1	a0001	c0001	t0002	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02056	hp2	a0002	c0003	t0001	g0002	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02071	hp1	a0002	c0003	t0001	g0002	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02071	hp2	a0001	c0001	t0002	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02074	hp1	a0002	c0003	t0001	g0002	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02074	hp2	a0003	c0002	t0001	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02080	hp1	a0003	c0002	t0001	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02080	hp2	a0001	c0001	t0002	g0029	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02083	hp1	a0003	c0002	t0001	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02083	hp2	a0001	c0001	t0017	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02129	hp1	a0003	c0002	t0001	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02129	hp2	a0002	c0003	t0001	g0002	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02135	hp1	a0001	c0001	t0002	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02135	hp2	a0003	c0002	t0001	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02145	hp1	a0002	c0004	t0003	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02145	hp2	a0001	c0001	t0002	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02148	hp1	a0001	c0001	t0002	g0001	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02148	hp2	a0002	c0003	t0001	g0002	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02155	hp1	a0003	c0002	t0001	g0001	EAS	CDX	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02155	hp2	a0001	c0009	t0002	g0001	EAS	CDX	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02165	hp1	a0003	c0002	t0001	g0012	EAS	CDX	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02165	hp2	a0003	c0002	t0001	g0001	EAS	CDX	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02257	hp1	a0002	c0004	t0003	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02257	hp2	a0002	c0003	t0001	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02258	hp1	a0001	c0001	t0002	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02258	hp2	a0003	c0002	t0001	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02280	hp1	a0002	c0004	t0021	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02280	hp2	a0008	c0018	t0015	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02300	hp1	a0002	c0003	t0001	g0002	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02300	hp2	a0001	c0001	t0002	g0001	AMR	PEL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02451	hp1	a0003	c0002	t0016	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02451	hp2	a0002	c0003	t0001	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02523	hp1	a0001	c0001	t0002	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02523	hp2	a0001	c0001	t0002	g0001	EAS	KHV	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02572	hp1	a0004	c0005	t0006	g0011	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02572	hp2	a0002	c0003	t0001	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02602	hp1	a0001	c0001	t0002	g0036	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02602	hp2	a0002	c0003	t0001	g0002	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02615	hp1	a0002	c0003	t0001	g0010	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02615	hp2	a0003	c0002	t0001	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02622	hp1	a0002	c0006	t0005	g0004	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02622	hp2	a0002	c0003	t0001	g0006	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02630	hp1	a0002	c0003	t0001	g0006	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02630	hp2	a0002	c0003	t0009	g0004	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02647	hp1	a0001	c0001	t0002	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02647	hp2	a0002	c0003	t0001	g0003	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02698	hp1	a0003	c0002	t0001	g0016	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02698	hp2	a0003	c0002	t0001	g0024	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02717	hp1	a0002	c0003	t0001	g0014	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02717	hp2	a0002	c0006	t0005	g0004	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02723	hp1	a0004	c0005	t0006	g0007	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02723	hp2	a0002	c0003	t0001	g0006	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02735	hp1	a0002	c0003	t0001	g0002	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02735	hp2	a0001	c0001	t0002	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02738	hp1	a0003	c0002	t0001	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02738	hp2	a0001	c0001	t0002	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02809	hp1	a0001	c0001	t0002	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02809	hp2	a0003	c0002	t0001	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02818	hp1	a0001	c0001	t0002	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02818	hp2	a0002	c0011	t0001	g0017	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02886	hp1	a0002	c0003	t0025	g0011	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02886	hp2	a0004	c0005	t0006	g0007	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02895	hp1	a0002	c0004	t0003	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02895	hp2	a0001	c0001	t0002	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02896	hp1	a0002	c0004	t0003	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02896	hp2	a0002	c0003	t0009	g0004	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02897	hp1	a0001	c0001	t0002	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02897	hp2	a0002	c0004	t0003	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02922	hp1	a0002	c0003	t0001	g0001	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02922	hp2	a0003	c0002	t0001	g0003	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02965	hp1	a0002	c0011	t0001	g0017	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02965	hp2	a0002	c0003	t0001	g0001	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02970	hp1	a0001	c0001	t0002	g0001	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02970	hp2	a0002	c0003	t0001	g0010	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02976	hp1	a0001	c0001	t0002	g0001	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02976	hp2	a0003	c0002	t0001	g0001	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03017	hp1	a0003	c0002	t0001	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03017	hp2	a0003	c0002	t0023	g0016	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03041	hp1	a0002	c0003	t0001	g0003	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03041	hp2	a0002	c0004	t0003	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03098	hp1	a0002	c0003	t0001	g0014	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03098	hp2	a0002	c0003	t0001	g0003	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03130	hp1	a0004	c0005	t0006	g0011	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03130	hp2	a0002	c0006	t0005	g0004	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03139	hp1	a0003	c0002	t0001	g0003	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03139	hp2	a0002	c0003	t0001	g0003	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03195	hp1	a0002	c0003	t0001	g0003	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03195	hp2	a0002	c0003	t0001	g0010	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03209	hp1	a0002	c0006	t0005	g0022	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03209	hp2	a0002	c0004	t0003	g0001	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03225	hp1	a0002	c0003	t0001	g0006	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03225	hp2	a0005	c0007	t0001	g0009	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03239	hp1	a0001	c0001	t0002	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03239	hp2	a0002	c0003	t0004	g0005	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03453	hp1	a0001	c0001	t0002	g0001	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03453	hp2	a0004	c0005	t0019	g0007	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03486	hp1	a0002	c0003	t0014	g0034	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03486	hp2	a0004	c0005	t0006	g0007	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03491	hp1	a0003	c0002	t0001	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03491	hp2	a0002	c0003	t0001	g0002	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03492	hp1	a0001	c0001	t0002	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03492	hp2	a0003	c0002	t0001	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03516	hp1	a0001	c0001	t0002	g0001	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03516	hp2	a0002	c0004	t0003	g0030	AFR	ESN	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03540	hp1	a0001	c0001	t0022	g0001	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03540	hp2	a0002	c0003	t0001	g0006	AFR	GWD	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03579	hp1	a0002	c0004	t0003	g0001	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03579	hp2	a0004	c0005	t0006	g0007	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03654	hp1	a0003	c0002	t0001	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03654	hp2	a0001	c0001	t0002	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03669	hp1	a0001	c0001	t0002	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03669	hp2	a0003	c0002	t0001	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03688	hp1	a0001	c0001	t0002	g0001	SAS	STU	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03688	hp2	a0002	c0003	t0001	g0002	SAS	STU	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03704	hp1	a0009	c0017	t0002	g0031	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03704	hp2	a0002	c0003	t0001	g0002	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03710	hp1	a0001	c0001	t0002	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03710	hp2	a0001	c0001	t0002	g0001	SAS	PJL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03831	hp1	a0001	c0001	t0002	g0001	SAS	BEB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03831	hp2	a0003	c0002	t0001	g0012	SAS	BEB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03942	hp1	a0002	c0003	t0001	g0002	SAS	BEB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03942	hp2	a0001	c0001	t0002	g0001	SAS	BEB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG04115	hp1	a0002	c0003	t0001	g0002	SAS	STU	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG04115	hp2	a0003	c0002	t0001	g0038	SAS	STU	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG04184	hp1	a0001	c0008	t0002	g0001	SAS	BEB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG04184	hp2	a0001	c0001	t0002	g0001	SAS	BEB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG04199	hp1	a0001	c0001	t0002	g0001	SAS	STU	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG04199	hp2	a0001	c0020	t0002	g0001	SAS	STU	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG04204	hp1	a0013	c0013	t0020	g0033	SAS	STU	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG04204	hp2	a0001	c0001	t0002	g0001	SAS	STU	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG04228	hp1	a0003	c0002	t0001	g0001	SAS	STU	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG04228	hp2	a0002	c0003	t0001	g0002	SAS	STU	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18522	hp1	a0008	c0019	t0011	g0026	AFR	YRI	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18522	hp2	a0001	c0001	t0002	g0001	AFR	YRI	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18612	hp1	a0001	c0001	t0002	g0001	EAS	CHB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18612	hp2	a0003	c0002	t0001	g0001	EAS	CHB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18747	hp1	a0001	c0001	t0002	g0001	EAS	CHB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18747	hp2	a0007	c0012	t0012	g0035	EAS	CHB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18906	hp1	a0003	c0002	t0001	g0001	AFR	YRI	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18906	hp2	a0002	c0004	t0003	g0001	AFR	YRI	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18939	hp1	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18939	hp2	a0003	c0002	t0001	g0008	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18942	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18942	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18944	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18944	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18945	hp1	a0002	c0003	t0001	g0037	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18945	hp2	a0006	c0010	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18946	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18946	hp2	a0003	c0002	t0007	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18949	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18949	hp2	a0002	c0003	t0004	g0005	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18951	hp1	a0002	c0003	t0008	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18951	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18952	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18952	hp2	a0003	c0002	t0007	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18954	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18954	hp2	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18957	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18957	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18959	hp1	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18959	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18960	hp1	a0002	c0003	t0001	g0008	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18960	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18961	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18961	hp2	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18962	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18962	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18964	hp1	a0002	c0003	t0001	g0019	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18964	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18965	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18965	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18966	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18966	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18967	hp1	a0002	c0003	t0004	g0005	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18967	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18968	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18968	hp2	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18969	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18969	hp2	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18970	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18970	hp2	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18971	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18971	hp2	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18972	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18972	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18975	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18975	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18977	hp1	a0002	c0003	t0004	g0005	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18977	hp2	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18978	hp1	a0002	c0003	t0008	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18978	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18979	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18979	hp2	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18982	hp1	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18982	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18984	hp1	a0002	c0003	t0004	g0005	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18984	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18988	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18988	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18990	hp1	a0002	c0003	t0001	g0008	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18990	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18994	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18994	hp2	a0003	c0002	t0001	g0015	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18995	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18995	hp2	a0002	c0003	t0004	g0005	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18998	hp1	a0007	c0012	t0012	g0021	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18998	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19000	hp1	a0001	c0009	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19000	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19002	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19002	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19003	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19003	hp2	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19004	hp1	a0003	c0002	t0001	g0020	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19004	hp2	a0011	c0015	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19005	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19005	hp2	a0003	c0002	t0007	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19010	hp1	a0002	c0003	t0004	g0005	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19010	hp2	a0003	c0002	t0011	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19011	hp1	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19011	hp2	a0003	c0002	t0001	g0013	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19012	hp1	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19012	hp2	a0002	c0003	t0001	g0008	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19030	hp1	a0005	c0007	t0001	g0009	AFR	LWK	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19030	hp2	a0002	c0003	t0001	g0003	AFR	LWK	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19043	hp1	a0002	c0003	t0001	g0010	AFR	LWK	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19043	hp2	a0005	c0007	t0001	g0009	AFR	LWK	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19055	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19055	hp2	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19056	hp1	a0003	c0002	t0001	g0015	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19056	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19057	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19057	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19058	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19058	hp2	a0001	c0001	t0002	g0028	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19060	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19060	hp2	a0003	c0002	t0007	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19062	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19062	hp2	a0003	c0002	t0007	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19064	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19064	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19065	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19065	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19066	hp1	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19066	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19068	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19068	hp2	a0002	c0003	t0001	g0008	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19072	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19072	hp2	a0002	c0003	t0008	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19074	hp1	a0002	c0003	t0001	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19074	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19075	hp1	a0003	c0002	t0001	g0023	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19075	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19078	hp1	a0006	c0010	t0010	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19078	hp2	a0001	c0001	t0010	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19082	hp1	a0003	c0002	t0007	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19082	hp2	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19083	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19083	hp2	a0002	c0003	t0008	g0002	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19084	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19084	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19090	hp1	a0003	c0002	t0001	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19090	hp2	a0002	c0003	t0004	g0005	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19240	hp1	a0002	c0004	t0003	g0001	AFR	YRI	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA19240	hp2	a0002	c0003	t0001	g0001	AFR	YRI	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA20129	hp1	a0005	c0007	t0001	g0009	AFR	ASW	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA20129	hp2	a0001	c0001	t0002	g0001	AFR	ASW	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA20752	hp1	a0001	c0001	t0002	g0001	EUR	TSI	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA20752	hp2	a0001	c0001	t0002	g0001	EUR	TSI	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA20805	hp1	a0002	c0004	t0003	g0001	EUR	TSI	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA20805	hp2	a0001	c0001	t0002	g0001	EUR	TSI	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA20905	hp1	a0003	c0002	t0001	g0001	SAS	GIH	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA20905	hp2	a0001	c0001	t0002	g0001	SAS	GIH	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01123	hp1	a0001	c0001	t0002	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG01123	hp2	a0001	c0001	t0002	g0001	AMR	CLM	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02109	hp1	a0002	c0003	t0001	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02109	hp2	a0002	c0003	t0001	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02486	hp1	a0002	c0003	t0001	g0001	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG02486	hp2	a0002	c0006	t0005	g0004	AFR	ACB	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03471	hp1	a0002	c0004	t0003	g0001	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG03471	hp2	a0001	c0001	t0002	g0001	AFR	MSL	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG06807	hp1	a0003	c0002	t0001	g0003	AFR	USA	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
HG06807	hp2	a0002	c0006	t0005	g0004	AFR	USA	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18955	hp1	a0002	c0003	t0004	g0005	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA18955	hp2	a0001	c0001	t0002	g0001	EAS	JPT	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA20300	hp1	a0002	c0003	t0001	g0006	AFR	USA	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA20300	hp2	a0004	c0005	t0006	g0007	AFR	USA	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA21309	hp1	a0001	c0001	t0002	g0001	AFR	LWK	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
NA21309	hp2	a0002	c0004	t0003	g0001	AFR	LWK	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
homoSapiens_chm13v2	hp1	a0003	c0002	t0001	g0001	REF	REF	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762
homoSapiens_grch38	hp1	a0001	c0001	t0002	g0001	REF	REF	RAG1_chr11_36563007_36584762	RAG1	chr11	36563007	36584762

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr11:36573555	A A	G G	1	a0008 a0008	2	HG02280.hp2 NA18522.hp1 HG02280.hp2 NA18522.hp1	missense_variant	MODERATE	c.251A>G c.251A>G	p.His84Arg p.His84Arg	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	381/6588	251/3132	84/1043	chr11	36573555
chr11:36573881	G G	A A	1	a0013 a0013	1	HG04204.hp1 HG04204.hp1	missense_variant	MODERATE	c.577G>A c.577G>A	p.Glu193Lys p.Glu193Lys	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	707/6588	577/3132	193/1043	chr11	36573881
chr11:36573956	C C	T T	1	a0009 a0009	1	HG03704.hp1 HG03704.hp1	missense_variant	MODERATE	c.652C>T c.652C>T	p.Arg218Cys p.Arg218Cys	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	782/6588	652/3132	218/1043	chr11	36573956
chr11:36574050	A A	G G	9	a0002 a0003 a0004 others(6): Show a0002 a0003 a0004 a0005 a0007 a0008 a0011 a0012 a0013	258	HG00099.hp1 HG00140.hp1 HG00408.hp1 others(255): Show HG00099.hp1 HG00140.hp1 HG00408.hp1 HG00438.hp2 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp2 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp2 HG01071.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp2 HG01168.hp1 HG01169.hp1 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG01934.hp2 HG01978.hp1 HG01981.hp1 HG01993.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02135.hp2 HG02145.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp2 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03669.hp2 HG03688.hp2 HG03704.hp2 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04115.hp2 HG04204.hp1 HG04228.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18942.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18959.hp1 NA18959.hp2 NA18960.hp1 NA18961.hp2 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18967.hp1 NA18967.hp2 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18972.hp2 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp1 NA18982.hp2 NA18984.hp1 NA18988.hp1 NA18990.hp1 NA18990.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19055.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19060.hp2 NA19062.hp1 NA19062.hp2 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp2 NA19068.hp1 NA19068.hp2 NA19072.hp1 NA19072.hp2 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19075.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.746A>G c.746A>G	p.His249Arg p.His249Arg	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	876/6588	746/3132	249/1043	chr11	36574050
chr11:36574210	C C	A A	1	a0004 a0004	8	HG02572.hp1 HG02723.hp1 HG02886.hp2 others(5): Show HG02572.hp1 HG02723.hp1 HG02886.hp2 HG03130.hp1 HG03453.hp2 HG03486.hp2 HG03579.hp2 NA20300.hp2	missense_variant	MODERATE	c.906C>A c.906C>A	p.Asp302Glu p.Asp302Glu	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1036/6588	906/3132	302/1043	chr11	36574210
chr11:36574650	G G	A A	1	a0010 a0010	1	HG01433.hp1 HG01433.hp1	missense_variant	MODERATE	c.1346G>A c.1346G>A	p.Arg449Lys p.Arg449Lys	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1476/6588	1346/3132	449/1043	chr11	36574650
chr11:36574824	G G	A A	1	a0011 a0011	1	NA19004.hp2 NA19004.hp2	missense_variant	MODERATE	c.1520G>A c.1520G>A	p.Arg507Gln p.Arg507Gln	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1650/6588	1520/3132	507/1043	chr11	36574824
chr11:36574877	C C	T T	1	a0007 a0007	2	NA18747.hp2 NA18998.hp1 NA18747.hp2 NA18998.hp1	missense_variant	MODERATE	c.1573C>T c.1573C>T	p.Pro525Ser p.Pro525Ser	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1703/6588	1573/3132	525/1043	chr11	36574877
chr11:36575339	A A	G G	1	a0012 a0012	1	HG01243.hp2 HG01243.hp2	missense_variant	MODERATE	c.2035A>G c.2035A>G	p.Ile679Val p.Ile679Val	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2165/6588	2035/3132	679/1043	chr11	36575339
chr11:36575763	A A	G G	3	a0003 a0006 a0011 a0003 a0006 a0011	113	HG00099.hp1 HG00438.hp2 HG00544.hp1 others(110): Show HG00099.hp1 HG00438.hp2 HG00544.hp1 HG00558.hp1 HG00597.hp2 HG00609.hp2 HG00621.hp1 HG00673.hp1 HG00735.hp1 HG01074.hp2 HG01168.hp1 HG01169.hp1 HG01175.hp1 HG01192.hp1 HG01255.hp2 HG01256.hp2 HG01358.hp1 HG01891.hp2 HG01934.hp2 HG01981.hp1 HG01993.hp2 HG02055.hp2 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02258.hp2 HG02451.hp1 HG02615.hp2 HG02698.hp1 HG02698.hp2 HG02738.hp1 HG02809.hp2 HG02922.hp2 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03139.hp1 HG03491.hp1 HG03492.hp2 HG03654.hp1 HG03669.hp2 HG03831.hp2 HG04115.hp2 HG04228.hp1 HG06807.hp1 NA18612.hp2 NA18906.hp1 NA18939.hp2 NA18942.hp1 NA18944.hp1 NA18945.hp2 NA18946.hp1 NA18946.hp2 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp1 NA18957.hp1 NA18959.hp2 NA18962.hp2 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18967.hp2 NA18968.hp1 NA18969.hp1 NA18970.hp1 NA18971.hp1 NA18972.hp2 NA18975.hp2 NA18982.hp2 NA18988.hp1 NA18990.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA19002.hp2 NA19003.hp1 NA19004.hp1 NA19004.hp2 NA19005.hp2 NA19010.hp2 NA19011.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19060.hp2 NA19062.hp1 NA19062.hp2 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp2 NA19068.hp1 NA19072.hp1 NA19074.hp2 NA19075.hp1 NA19075.hp2 NA19078.hp1 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19084.hp1 NA19090.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	missense_variant	MODERATE	c.2459A>G c.2459A>G	p.Lys820Arg p.Lys820Arg	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2589/6588	2459/3132	820/1043	chr11	36575763
chr11:36575942	G G	A A	1	a0005 a0005	5	HG02055.hp1 HG03225.hp2 NA19030.hp1 others(2): Show HG02055.hp1 HG03225.hp2 NA19030.hp1 NA19043.hp2 NA20129.hp1	missense_variant	MODERATE	c.2638G>A c.2638G>A	p.Glu880Lys p.Glu880Lys	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2768/6588	2638/3132	880/1043	chr11	36575942

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr11:36573493	A A	G G	1	a0002c0006 a0002c0006	7	HG01243.hp1 HG02486.hp2 HG02622.hp1 others(4): Show HG01243.hp1 HG02486.hp2 HG02622.hp1 HG02717.hp2 HG03130.hp2 HG03209.hp1 HG06807.hp2	synonymous_variant	LOW	c.189A>G c.189A>G	p.Pro63Pro p.Pro63Pro	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	319/6588	189/3132	63/1043	chr11	36573493
chr11:36573493	A A	T T	1	a0001c0020 a0001c0020	1	HG04199.hp2 HG04199.hp2	synonymous_variant	LOW	c.189A>T c.189A>T	p.Pro63Pro p.Pro63Pro	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	319/6588	189/3132	63/1043	chr11	36573493
chr11:36573607	G G	A A	1	a0001c0008 a0001c0008	3	HG01070.hp1 HG01516.hp1 HG04184.hp1 HG01070.hp1 HG01516.hp1 HG04184.hp1	synonymous_variant	LOW	c.303G>A c.303G>A	p.Ala101Ala p.Ala101Ala	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	433/6588	303/3132	101/1043	chr11	36573607
chr11:36574882	G G	A A	1	a0008c0018 a0008c0018	1	HG02280.hp2 HG02280.hp2	synonymous_variant	LOW	c.1578G>A c.1578G>A	p.Leu526Leu p.Leu526Leu	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1708/6588	1578/3132	526/1043	chr11	36574882
chr11:36576055	G G	A A	1	a0002c0011 a0002c0011	2	HG02818.hp2 HG02965.hp1 HG02818.hp2 HG02965.hp1	synonymous_variant	LOW	c.2751G>A c.2751G>A	p.Gln917Gln p.Gln917Gln	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2881/6588	2751/3132	917/1043	chr11	36576055
chr11:36576184	A A	G G	1	a0002c0004 a0002c0004	26	HG00733.hp2 HG00735.hp2 HG00738.hp1 others(23): Show HG00733.hp2 HG00735.hp2 HG00738.hp1 HG01099.hp1 HG01106.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp2 HG01361.hp1 HG01516.hp2 HG01517.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG03041.hp2 HG03209.hp2 HG03471.hp1 HG03516.hp2 HG03579.hp1 NA18906.hp2 NA19240.hp1 NA20805.hp1 NA21309.hp2	synonymous_variant	LOW	c.2880A>G c.2880A>G	p.Ala960Ala p.Ala960Ala	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	3010/6588	2880/3132	960/1043	chr11	36576184
chr11:36576259	T T	C C	1	a0001c0009 a0001c0009	2	HG02155.hp2 NA19000.hp1 HG02155.hp2 NA19000.hp1	synonymous_variant	LOW	c.2955T>C c.2955T>C	p.Tyr985Tyr p.Tyr985Tyr	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	3085/6588	2955/3132	985/1043	chr11	36576259

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chr11:36568023	G G	A A	1	a0001c0001t0013 a0001c0001t0013	1	HG01261.hp1 HG01261.hp1	5_prime_UTR_variant	MODIFIER	c.-114G>A c.-114G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/2	5282		chr11	36568023
chr11:36568072	A A	G G	2	a0002c0004t0003 a0002c0004t0026 a0002c0004t0003 a0002c0004t0026	25	HG00733.hp2 HG00735.hp2 HG00738.hp1 others(22): Show HG00733.hp2 HG00735.hp2 HG00738.hp1 HG01099.hp1 HG01106.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp2 HG01361.hp1 HG01516.hp2 HG01517.hp1 HG02145.hp1 HG02257.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG03041.hp2 HG03209.hp2 HG03471.hp1 HG03516.hp2 HG03579.hp1 NA18906.hp2 NA19240.hp1 NA20805.hp1 NA21309.hp2	5_prime_UTR_variant	MODIFIER	c.-65A>G c.-65A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/2	5233		chr11	36568072
chr11:36576674	G G	A A	1	a0002c0003t0014 a0002c0003t0014	1	HG03486.hp1 HG03486.hp1	3_prime_UTR_variant	MODIFIER	c.238G>A c.238G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	238		chr11	36576674
chr11:36576834	G G	A A	1	a0002c0003t0009 a0002c0003t0009	3	HG01884.hp1 HG02630.hp2 HG02896.hp2 HG01884.hp1 HG02630.hp2 HG02896.hp2	3_prime_UTR_variant	MODIFIER	c.398G>A c.398G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	398		chr11	36576834
chr11:36576856	T T	C C	1	a0002c0003t0014 a0002c0003t0014	1	HG03486.hp1 HG03486.hp1	3_prime_UTR_variant	MODIFIER	c.420T>C c.420T>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	420		chr11	36576856
chr11:36576876	A A	G G	1	a0002c0003t0025 a0002c0003t0025	1	HG02886.hp1 HG02886.hp1	3_prime_UTR_variant	MODIFIER	c.440A>G c.440A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	440		chr11	36576876
chr11:36577025	G G	A A	1	a0002c0003t0009 a0002c0003t0009	3	HG01884.hp1 HG02630.hp2 HG02896.hp2 HG01884.hp1 HG02630.hp2 HG02896.hp2	3_prime_UTR_variant	MODIFIER	c.589G>A c.589G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	589		chr11	36577025
chr11:36577175	C C	T T	1	a0002c0003t0014 a0002c0003t0014	1	HG03486.hp1 HG03486.hp1	3_prime_UTR_variant	MODIFIER	c.739C>T c.739C>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	739		chr11	36577175
chr11:36577187	A A	G G	1	a0012c0016t0024 a0012c0016t0024	1	HG01243.hp2 HG01243.hp2	3_prime_UTR_variant	MODIFIER	c.751A>G c.751A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	751		chr11	36577187
chr11:36577342	G G	T T	1	a0003c0002t0023 a0003c0002t0023	1	HG03017.hp2 HG03017.hp2	3_prime_UTR_variant	MODIFIER	c.906G>T c.906G>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	906		chr11	36577342
chr11:36577392	C C	G G	1	a0001c0001t0022 a0001c0001t0022	1	HG03540.hp1 HG03540.hp1	3_prime_UTR_variant	MODIFIER	c.956C>G c.956C>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	956		chr11	36577392
chr11:36577519	C C	T T	3	a0002c0004t0003 a0002c0004t0021 a0002c0004t0026 a0002c0004t0003 a0002c0004t0021 a0002c0004t0026	26	HG00733.hp2 HG00735.hp2 HG00738.hp1 others(23): Show HG00733.hp2 HG00735.hp2 HG00738.hp1 HG01099.hp1 HG01106.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp2 HG01361.hp1 HG01516.hp2 HG01517.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG03041.hp2 HG03209.hp2 HG03471.hp1 HG03516.hp2 HG03579.hp1 NA18906.hp2 NA19240.hp1 NA20805.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.1083C>T c.1083C>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1083		chr11	36577519
chr11:36577540	A A	G G	1	a0007c0012t0012 a0007c0012t0012	2	NA18747.hp2 NA18998.hp1 NA18747.hp2 NA18998.hp1	3_prime_UTR_variant	MODIFIER	c.1104A>G c.1104A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1104		chr11	36577540
chr11:36577614	G G	A A	1	a0003c0002t0007 a0003c0002t0007	6	NA18946.hp2 NA18952.hp2 NA19005.hp2 others(3): Show NA18946.hp2 NA18952.hp2 NA19005.hp2 NA19060.hp2 NA19062.hp2 NA19082.hp1	3_prime_UTR_variant	MODIFIER	c.1178G>A c.1178G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1178		chr11	36577614
chr11:36577802	A A	G G	1	a0013c0013t0020 a0013c0013t0020	1	HG04204.hp1 HG04204.hp1	3_prime_UTR_variant	MODIFIER	c.1366A>G c.1366A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1366		chr11	36577802
chr11:36577930	A A	C C	1	a0007c0012t0012 a0007c0012t0012	2	NA18747.hp2 NA18998.hp1 NA18747.hp2 NA18998.hp1	3_prime_UTR_variant	MODIFIER	c.1494A>C c.1494A>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1494		chr11	36577930
chr11:36577998	A A	G G	1	a0002c0003t0008 a0002c0003t0008	4	NA18951.hp1 NA18978.hp1 NA19072.hp2 others(1): Show NA18951.hp1 NA18978.hp1 NA19072.hp2 NA19083.hp2	3_prime_UTR_variant	MODIFIER	c.1562A>G c.1562A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1562		chr11	36577998
chr11:36578414	C C	T T	1	a0002c0003t0004 a0002c0003t0004	9	HG03239.hp2 NA18949.hp2 NA18955.hp1 others(6): Show HG03239.hp2 NA18949.hp2 NA18955.hp1 NA18967.hp1 NA18977.hp1 NA18984.hp1 NA18995.hp2 NA19010.hp1 NA19090.hp2	3_prime_UTR_variant	MODIFIER	c.1978C>T c.1978C>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	1978		chr11	36578414
chr11:36578601	T T	C C	1	a0008c0018t0015 a0008c0018t0015	1	HG02280.hp2 HG02280.hp2	3_prime_UTR_variant	MODIFIER	c.2165T>C c.2165T>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2165		chr11	36578601
chr11:36578682	T T	C C	3	a0002c0004t0003 a0002c0004t0021 a0002c0004t0026 a0002c0004t0003 a0002c0004t0021 a0002c0004t0026	26	HG00733.hp2 HG00735.hp2 HG00738.hp1 others(23): Show HG00733.hp2 HG00735.hp2 HG00738.hp1 HG01099.hp1 HG01106.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp2 HG01361.hp1 HG01516.hp2 HG01517.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG03041.hp2 HG03209.hp2 HG03471.hp1 HG03516.hp2 HG03579.hp1 NA18906.hp2 NA19240.hp1 NA20805.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.2246T>C c.2246T>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2246		chr11	36578682
chr11:36578765	G G	T T	1	a0007c0012t0012 a0007c0012t0012	2	NA18747.hp2 NA18998.hp1 NA18747.hp2 NA18998.hp1	3_prime_UTR_variant	MODIFIER	c.2329G>T c.2329G>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2329		chr11	36578765
chr11:36578966	G G	T T	2	a0004c0005t0006 a0004c0005t0019 a0004c0005t0006 a0004c0005t0019	8	HG02572.hp1 HG02723.hp1 HG02886.hp2 others(5): Show HG02572.hp1 HG02723.hp1 HG02886.hp2 HG03130.hp1 HG03453.hp2 HG03486.hp2 HG03579.hp2 NA20300.hp2	3_prime_UTR_variant	MODIFIER	c.2530G>T c.2530G>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2530		chr11	36578966
chr11:36579035	A A	C C	1	a0013c0013t0020 a0013c0013t0020	1	HG04204.hp1 HG04204.hp1	3_prime_UTR_variant	MODIFIER	c.2599A>C c.2599A>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2599		chr11	36579035
chr11:36579090	A A	G G	1	a0013c0013t0020 a0013c0013t0020	1	HG04204.hp1 HG04204.hp1	3_prime_UTR_variant	MODIFIER	c.2654A>G c.2654A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2654		chr11	36579090
chr11:36579107	G G	T T	1	a0001c0001t0018 a0001c0001t0018	1	HG01993.hp1 HG01993.hp1	3_prime_UTR_variant	MODIFIER	c.2671G>T c.2671G>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2671		chr11	36579107
chr11:36579134	A A	AT AT	3	a0002c0004t0003 a0002c0004t0021 a0002c0004t0026 a0002c0004t0003 a0002c0004t0021 a0002c0004t0026	26	HG00733.hp2 HG00735.hp2 HG00738.hp1 others(23): Show HG00733.hp2 HG00735.hp2 HG00738.hp1 HG01099.hp1 HG01106.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp2 HG01361.hp1 HG01516.hp2 HG01517.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG03041.hp2 HG03209.hp2 HG03471.hp1 HG03516.hp2 HG03579.hp1 NA18906.hp2 NA19240.hp1 NA20805.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.2705dupT c.2705dupT	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2706	INFO_REALIGN_3_PRIME	chr11	36579134
chr11:36579371	TTAAG TTAAG	T T	1	a0002c0006t0005 a0002c0006t0005	7	HG01243.hp1 HG02486.hp2 HG02622.hp1 others(4): Show HG01243.hp1 HG02486.hp2 HG02622.hp1 HG02717.hp2 HG03130.hp2 HG03209.hp1 HG06807.hp2	3_prime_UTR_variant	MODIFIER	c.2940_2943delTAAG c.2940_2943delTAAG	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	2940	INFO_REALIGN_3_PRIME	chr11	36579371
chr11:36579546	C C	CT CT	9	a0001c0001t0010 a0002c0004t0003 a0002c0004t0021 others(6): Show a0001c0001t0010 a0002c0004t0003 a0002c0004t0021 a0003c0002t0011 a0004c0005t0019 a0006c0010t0010 a0008c0018t0015 a0008c0019t0011 a0010c0014t0010	32	HG00733.hp2 HG00735.hp2 HG00738.hp1 others(29): Show HG00733.hp2 HG00735.hp2 HG00738.hp1 HG01106.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp2 HG01361.hp1 HG01433.hp1 HG01516.hp2 HG01517.hp1 HG02145.hp1 HG02257.hp1 HG02280.hp1 HG02280.hp2 HG02895.hp1 HG02896.hp1 HG02897.hp2 HG03041.hp2 HG03209.hp2 HG03453.hp2 HG03471.hp1 HG03516.hp2 HG03579.hp1 NA18522.hp1 NA18906.hp2 NA19010.hp2 NA19078.hp1 NA19078.hp2 NA19240.hp1 NA20805.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.3122dupT c.3122dupT	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	3123	INFO_REALIGN_3_PRIME	chr11	36579546
chr11:36579546	CT CT	C C	2	a0002c0003t0004 a0003c0002t0016 a0002c0003t0004 a0003c0002t0016	10	HG02451.hp1 HG03239.hp2 NA18949.hp2 others(7): Show HG02451.hp1 HG03239.hp2 NA18949.hp2 NA18955.hp1 NA18967.hp1 NA18977.hp1 NA18984.hp1 NA18995.hp2 NA19010.hp1 NA19090.hp2	3_prime_UTR_variant	MODIFIER	c.3122delT c.3122delT	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	3122	INFO_REALIGN_3_PRIME	chr11	36579546
chr11:36579592	A A	G G	1	a0001c0001t0017 a0001c0001t0017	1	HG02083.hp2 HG02083.hp2	3_prime_UTR_variant	MODIFIER	c.3156A>G c.3156A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	3156		chr11	36579592
chr11:36579620	G G	A A	25	a0002c0003t0001 a0002c0003t0004 a0002c0003t0008 others(22): Show a0002c0003t0001 a0002c0003t0004 a0002c0003t0008 a0002c0003t0009 a0002c0003t0014 a0002c0003t0025 a0002c0004t0003 a0002c0004t0021 a0002c0004t0026 a0002c0006t0005 a0002c0011t0001 a0003c0002t0001 a0003c0002t0007 a0003c0002t0011 a0003c0002t0016 a0003c0002t0023 a0004c0005t0006 a0004c0005t0019 a0005c0007t0001 a0007c0012t0012 a0008c0018t0015 a0008c0019t0011 a0011c0015t0001 a0012c0016t0024 a0013c0013t0020	258	HG00099.hp1 HG00140.hp1 HG00408.hp1 others(255): Show HG00099.hp1 HG00140.hp1 HG00408.hp1 HG00438.hp2 HG00544.hp1 HG00558.hp1 HG00597.hp1 HG00597.hp2 HG00609.hp2 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00733.hp1 HG00733.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG01069.hp2 HG01071.hp1 HG01074.hp2 HG01099.hp1 HG01106.hp1 HG01109.hp2 HG01168.hp1 HG01169.hp1 HG01175.hp1 HG01192.hp1 HG01243.hp1 HG01243.hp2 HG01255.hp2 HG01256.hp1 HG01256.hp2 HG01258.hp1 HG01261.hp2 HG01346.hp1 HG01358.hp1 HG01361.hp1 HG01361.hp2 HG01496.hp1 HG01516.hp2 HG01517.hp1 HG01884.hp1 HG01891.hp2 HG01934.hp2 HG01978.hp1 HG01981.hp1 HG01993.hp2 HG02055.hp1 HG02055.hp2 HG02056.hp2 HG02071.hp1 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02083.hp1 HG02109.hp1 HG02109.hp2 HG02129.hp1 HG02129.hp2 HG02135.hp2 HG02145.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp1 HG02165.hp2 HG02257.hp1 HG02257.hp2 HG02258.hp2 HG02280.hp1 HG02280.hp2 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02486.hp2 HG02572.hp1 HG02572.hp2 HG02602.hp2 HG02615.hp1 HG02615.hp2 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02738.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02896.hp1 HG02896.hp2 HG02897.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG02970.hp2 HG02976.hp2 HG03017.hp1 HG03017.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03098.hp2 HG03130.hp1 HG03130.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03209.hp2 HG03225.hp1 HG03225.hp2 HG03239.hp2 HG03453.hp2 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp2 HG03516.hp2 HG03540.hp2 HG03579.hp1 HG03579.hp2 HG03654.hp1 HG03669.hp2 HG03688.hp2 HG03704.hp2 HG03831.hp2 HG03942.hp1 HG04115.hp1 HG04115.hp2 HG04204.hp1 HG04228.hp1 HG04228.hp2 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18939.hp1 NA18939.hp2 NA18942.hp1 NA18944.hp1 NA18945.hp1 NA18946.hp1 NA18946.hp2 NA18949.hp2 NA18951.hp1 NA18951.hp2 NA18952.hp1 NA18952.hp2 NA18954.hp1 NA18954.hp2 NA18955.hp1 NA18957.hp1 NA18959.hp1 NA18959.hp2 NA18960.hp1 NA18961.hp2 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18965.hp2 NA18966.hp1 NA18967.hp1 NA18967.hp2 NA18968.hp1 NA18968.hp2 NA18969.hp1 NA18969.hp2 NA18970.hp1 NA18970.hp2 NA18971.hp1 NA18971.hp2 NA18972.hp2 NA18975.hp2 NA18977.hp1 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp1 NA18982.hp2 NA18984.hp1 NA18988.hp1 NA18990.hp1 NA18990.hp2 NA18994.hp1 NA18994.hp2 NA18995.hp1 NA18995.hp2 NA18998.hp1 NA19002.hp2 NA19003.hp1 NA19003.hp2 NA19004.hp1 NA19004.hp2 NA19005.hp2 NA19010.hp1 NA19010.hp2 NA19011.hp1 NA19011.hp2 NA19012.hp1 NA19012.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19043.hp2 NA19055.hp2 NA19056.hp1 NA19056.hp2 NA19057.hp2 NA19058.hp1 NA19060.hp1 NA19060.hp2 NA19062.hp1 NA19062.hp2 NA19064.hp1 NA19065.hp1 NA19065.hp2 NA19066.hp2 NA19068.hp1 NA19068.hp2 NA19072.hp1 NA19072.hp2 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19075.hp2 NA19082.hp1 NA19082.hp2 NA19083.hp1 NA19083.hp2 NA19084.hp1 NA19090.hp1 NA19090.hp2 NA19240.hp1 NA19240.hp2 NA20129.hp1 NA20300.hp1 NA20300.hp2 NA20805.hp1 NA20905.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	3_prime_UTR_variant	MODIFIER	c.3184G>A c.3184G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	2/2	3184		chr11	36579620

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr11:36568134	A A	G G	1	a0003c0002t0001g0038 a0003c0002t0001g0038	1	HG04115.hp2 HG04115.hp2	intron_variant	MODIFIER	c.-15+12A>G c.-15+12A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36568134
chr11:36568428	C C	T T	1	a0002c0003t0001g0037 a0002c0003t0001g0037	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-15+306C>T c.-15+306C>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36568428
chr11:36568568	A A	G G	2	a0004c0005t0006g0007 a0004c0005t0019g0007 a0004c0005t0006g0007 a0004c0005t0019g0007	6	HG02723.hp1 HG02886.hp2 HG03453.hp2 others(3): Show HG02723.hp1 HG02886.hp2 HG03453.hp2 HG03486.hp2 HG03579.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-15+446A>G c.-15+446A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36568568
chr11:36568663	G G	A A	8	a0001c0001t0002g0002 a0002c0003t0001g0002 a0002c0003t0001g0008 others(5): Show a0001c0001t0002g0002 a0002c0003t0001g0002 a0002c0003t0001g0008 a0002c0003t0001g0018 a0002c0003t0001g0019 a0002c0003t0001g0037 a0002c0003t0008g0002 a0003c0002t0001g0008	53	HG00140.hp1 HG00408.hp1 HG00597.hp1 others(50): Show HG00140.hp1 HG00408.hp1 HG00597.hp1 HG00642.hp1 HG01069.hp2 HG01071.hp1 HG01109.hp2 HG01167.hp2 HG01169.hp2 HG01346.hp1 HG01361.hp2 HG01978.hp1 HG02056.hp2 HG02071.hp1 HG02074.hp1 HG02129.hp2 HG02148.hp2 HG02300.hp1 HG02602.hp2 HG02735.hp1 HG03491.hp2 HG03688.hp2 HG03704.hp2 HG03942.hp1 HG04115.hp1 HG04228.hp2 NA18939.hp1 NA18939.hp2 NA18945.hp1 NA18951.hp1 NA18954.hp2 NA18959.hp1 NA18960.hp1 NA18961.hp2 NA18964.hp1 NA18968.hp2 NA18969.hp2 NA18970.hp2 NA18971.hp2 NA18977.hp2 NA18978.hp1 NA18979.hp2 NA18982.hp1 NA18990.hp1 NA19003.hp2 NA19011.hp1 NA19012.hp1 NA19012.hp2 NA19055.hp2 NA19068.hp2 NA19072.hp2 NA19074.hp1 NA19083.hp2	intron_variant	MODIFIER	c.-15+541G>A c.-15+541G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36568663
chr11:36568814	A A	C C	1	a0002c0011t0001g0017 a0002c0011t0001g0017	2	HG02818.hp2 HG02965.hp1 HG02818.hp2 HG02965.hp1	intron_variant	MODIFIER	c.-15+692A>C c.-15+692A>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36568814
chr11:36568847	A A	G G	2	a0003c0002t0001g0016 a0003c0002t0023g0016 a0003c0002t0001g0016 a0003c0002t0023g0016	2	HG02698.hp1 HG03017.hp2 HG02698.hp1 HG03017.hp2	intron_variant	MODIFIER	c.-15+725A>G c.-15+725A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36568847
chr11:36568860	G G	A A	1	a0003c0002t0001g0020 a0003c0002t0001g0020	1	NA19004.hp1 NA19004.hp1	intron_variant	MODIFIER	c.-15+738G>A c.-15+738G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36568860
chr11:36568867	T T	A A	1	a0007c0012t0012g0021 a0007c0012t0012g0021	1	NA18998.hp1 NA18998.hp1	intron_variant	MODIFIER	c.-15+745T>A c.-15+745T>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36568867
chr11:36569311	G G	A A	3	a0002c0003t0009g0004 a0002c0006t0005g0004 a0002c0006t0005g0022 a0002c0003t0009g0004 a0002c0006t0005g0004 a0002c0006t0005g0022	10	HG01243.hp1 HG01884.hp1 HG02486.hp2 others(7): Show HG01243.hp1 HG01884.hp1 HG02486.hp2 HG02622.hp1 HG02630.hp2 HG02717.hp2 HG02896.hp2 HG03130.hp2 HG03209.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-15+1189G>A c.-15+1189G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36569311
chr11:36569400	A A	G G	2	a0002c0003t0001g0008 a0003c0002t0001g0008 a0002c0003t0001g0008 a0003c0002t0001g0008	5	NA18939.hp2 NA18960.hp1 NA18990.hp1 others(2): Show NA18939.hp2 NA18960.hp1 NA18990.hp1 NA19012.hp2 NA19068.hp2	intron_variant	MODIFIER	c.-15+1278A>G c.-15+1278A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36569400
chr11:36569589	A A	C C	1	a0001c0001t0002g0036 a0001c0001t0002g0036	1	HG02602.hp1 HG02602.hp1	intron_variant	MODIFIER	c.-15+1467A>C c.-15+1467A>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36569589
chr11:36569730	TAATAA TAATAA	T T	1	a0005c0007t0001g0009 a0005c0007t0001g0009	5	HG02055.hp1 HG03225.hp2 NA19030.hp1 others(2): Show HG02055.hp1 HG03225.hp2 NA19030.hp1 NA19043.hp2 NA20129.hp1	intron_variant	MODIFIER	c.-15+1616_-15+1620d others(7): Show c.-15+1616_-15+1620delTAAAA	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1	INFO_REALIGN_3_PRIME	chr11	36569730
chr11:36569884	A A	G G	1	a0003c0002t0001g0015 a0003c0002t0001g0015	2	NA18994.hp2 NA19056.hp1 NA18994.hp2 NA19056.hp1	intron_variant	MODIFIER	c.-15+1762A>G c.-15+1762A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36569884
chr11:36569907	A A	G G	2	a0002c0003t0001g0003 a0003c0002t0001g0003 a0002c0003t0001g0003 a0003c0002t0001g0003	10	HG01496.hp1 HG02647.hp2 HG02922.hp2 others(7): Show HG01496.hp1 HG02647.hp2 HG02922.hp2 HG03041.hp1 HG03098.hp2 HG03139.hp1 HG03139.hp2 HG03195.hp1 HG06807.hp1 NA19030.hp2	intron_variant	MODIFIER	c.-15+1785A>G c.-15+1785A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36569907
chr11:36569924	G G	A A	1	a0003c0002t0001g0023 a0003c0002t0001g0023	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.-15+1802G>A c.-15+1802G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36569924
chr11:36570161	T T	C C	1	a0003c0002t0001g0024 a0003c0002t0001g0024	1	HG02698.hp2 HG02698.hp2	intron_variant	MODIFIER	c.-15+2039T>C c.-15+2039T>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36570161
chr11:36570211	C C	T T	1	a0007c0012t0012g0035 a0007c0012t0012g0035	1	NA18747.hp2 NA18747.hp2	intron_variant	MODIFIER	c.-15+2089C>T c.-15+2089C>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36570211
chr11:36570370	A A	G G	1	a0005c0007t0001g0009 a0005c0007t0001g0009	5	HG02055.hp1 HG03225.hp2 NA19030.hp1 others(2): Show HG02055.hp1 HG03225.hp2 NA19030.hp1 NA19043.hp2 NA20129.hp1	intron_variant	MODIFIER	c.-15+2248A>G c.-15+2248A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36570370
chr11:36570532	T T	C C	4	a0002c0003t0025g0011 a0004c0005t0006g0007 a0004c0005t0006g0011 others(1): Show a0002c0003t0025g0011 a0004c0005t0006g0007 a0004c0005t0006g0011 a0004c0005t0019g0007	9	HG02572.hp1 HG02723.hp1 HG02886.hp1 others(6): Show HG02572.hp1 HG02723.hp1 HG02886.hp1 HG02886.hp2 HG03130.hp1 HG03453.hp2 HG03486.hp2 HG03579.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-15+2410T>C c.-15+2410T>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36570532
chr11:36570661	C C	T T	3	a0002c0003t0001g0010 a0002c0003t0001g0014 a0002c0003t0014g0034 a0002c0003t0001g0010 a0002c0003t0001g0014 a0002c0003t0014g0034	7	HG02615.hp1 HG02717.hp1 HG02970.hp2 others(4): Show HG02615.hp1 HG02717.hp1 HG02970.hp2 HG03098.hp1 HG03195.hp2 HG03486.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-15+2539C>T c.-15+2539C>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36570661
chr11:36570841	G G	A A	1	a0002c0004t0003g0025 a0002c0004t0003g0025	1	HG01361.hp1 HG01361.hp1	intron_variant	MODIFIER	c.-14-2450G>A c.-14-2450G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36570841
chr11:36570842	A A	C C	1	a0002c0003t0001g0019 a0002c0003t0001g0019	1	NA18964.hp1 NA18964.hp1	intron_variant	MODIFIER	c.-14-2449A>C c.-14-2449A>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36570842
chr11:36570850	C C	T T	1	a0002c0011t0001g0017 a0002c0011t0001g0017	2	HG02818.hp2 HG02965.hp1 HG02818.hp2 HG02965.hp1	intron_variant	MODIFIER	c.-14-2441C>T c.-14-2441C>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36570850
chr11:36571014	C C	A A	1	a0002c0011t0001g0017 a0002c0011t0001g0017	2	HG02818.hp2 HG02965.hp1 HG02818.hp2 HG02965.hp1	intron_variant	MODIFIER	c.-14-2277C>A c.-14-2277C>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36571014
chr11:36571157	T T	C C	1	a0008c0019t0011g0026 a0008c0019t0011g0026	1	NA18522.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-14-2134T>C c.-14-2134T>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36571157
chr11:36571461	T T	C C	1	a0003c0002t0001g0012 a0003c0002t0001g0012	2	HG02165.hp1 HG03831.hp2 HG02165.hp1 HG03831.hp2	intron_variant	MODIFIER	c.-14-1830T>C c.-14-1830T>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36571461
chr11:36571465	G G	C C	1	a0003c0002t0001g0013 a0003c0002t0001g0013	2	HG00673.hp1 NA19011.hp2 HG00673.hp1 NA19011.hp2	intron_variant	MODIFIER	c.-14-1826G>C c.-14-1826G>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36571465
chr11:36571614	C C	T T	3	a0002c0003t0004g0005 a0007c0012t0012g0021 a0007c0012t0012g0035 a0002c0003t0004g0005 a0007c0012t0012g0021 a0007c0012t0012g0035	11	HG03239.hp2 NA18747.hp2 NA18949.hp2 others(8): Show HG03239.hp2 NA18747.hp2 NA18949.hp2 NA18955.hp1 NA18967.hp1 NA18977.hp1 NA18984.hp1 NA18995.hp2 NA18998.hp1 NA19010.hp1 NA19090.hp2	intron_variant	MODIFIER	c.-14-1677C>T c.-14-1677C>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36571614
chr11:36571812	A A	T T	6	a0002c0003t0025g0011 a0002c0011t0001g0017 a0004c0005t0006g0007 others(3): Show a0002c0003t0025g0011 a0002c0011t0001g0017 a0004c0005t0006g0007 a0004c0005t0006g0011 a0004c0005t0019g0007 a0013c0013t0020g0033	12	HG02572.hp1 HG02723.hp1 HG02818.hp2 others(9): Show HG02572.hp1 HG02723.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02965.hp1 HG03130.hp1 HG03453.hp2 HG03486.hp2 HG03579.hp2 HG04204.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-14-1479A>T c.-14-1479A>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36571812
chr11:36571956	T T	C C	2	a0007c0012t0012g0021 a0007c0012t0012g0035 a0007c0012t0012g0021 a0007c0012t0012g0035	2	NA18747.hp2 NA18998.hp1 NA18747.hp2 NA18998.hp1	intron_variant	MODIFIER	c.-14-1335T>C c.-14-1335T>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36571956
chr11:36571980	G G	T T	2	a0002c0003t0001g0006 a0002c0006t0005g0022 a0002c0003t0001g0006 a0002c0006t0005g0022	7	HG02622.hp2 HG02630.hp1 HG02723.hp2 others(4): Show HG02622.hp2 HG02630.hp1 HG02723.hp2 HG03209.hp1 HG03225.hp1 HG03540.hp2 NA20300.hp1	intron_variant	MODIFIER	c.-14-1311G>T c.-14-1311G>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36571980
chr11:36571993	G G	A A	1	a0002c0003t0001g0014 a0002c0003t0001g0014	2	HG02717.hp1 HG03098.hp1 HG02717.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-14-1298G>A c.-14-1298G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36571993
chr11:36572141	A A	G G	1	a0002c0003t0001g0014 a0002c0003t0001g0014	2	HG02717.hp1 HG03098.hp1 HG02717.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-14-1150A>G c.-14-1150A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36572141
chr11:36572186	C C	A A	1	a0001c0001t0002g0027 a0001c0001t0002g0027	1	HG01981.hp2 HG01981.hp2	intron_variant	MODIFIER	c.-14-1105C>A c.-14-1105C>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36572186
chr11:36572238	C C	T T	2	a0007c0012t0012g0021 a0007c0012t0012g0035 a0007c0012t0012g0021 a0007c0012t0012g0035	2	NA18747.hp2 NA18998.hp1 NA18747.hp2 NA18998.hp1	intron_variant	MODIFIER	c.-14-1053C>T c.-14-1053C>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36572238
chr11:36572372	G G	A A	2	a0001c0001t0002g0028 a0002c0003t0001g0018 a0001c0001t0002g0028 a0002c0003t0001g0018	2	HG00140.hp1 NA19058.hp2 HG00140.hp1 NA19058.hp2	intron_variant	MODIFIER	c.-14-919G>A c.-14-919G>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36572372
chr11:36572417	A A	T T	1	a0001c0001t0013g0032 a0001c0001t0013g0032	1	HG01261.hp1 HG01261.hp1	intron_variant	MODIFIER	c.-14-874A>T c.-14-874A>T	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36572417
chr11:36572555	C C	G G	1	a0009c0017t0002g0031 a0009c0017t0002g0031	1	HG03704.hp1 HG03704.hp1	intron_variant	MODIFIER	c.-14-736C>G c.-14-736C>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36572555
chr11:36572747	A A	C C	1	a0002c0004t0003g0030 a0002c0004t0003g0030	1	HG03516.hp2 HG03516.hp2	intron_variant	MODIFIER	c.-14-544A>C c.-14-544A>C	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36572747
chr11:36572867	A A	G G	2	a0002c0003t0001g0010 a0002c0003t0001g0014 a0002c0003t0001g0010 a0002c0003t0001g0014	6	HG02615.hp1 HG02717.hp1 HG02970.hp2 others(3): Show HG02615.hp1 HG02717.hp1 HG02970.hp2 HG03098.hp1 HG03195.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-14-424A>G c.-14-424A>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36572867
chr11:36572882	T T	A A	1	a0001c0001t0002g0029 a0001c0001t0002g0029	1	HG02080.hp2 HG02080.hp2	intron_variant	MODIFIER	c.-14-409T>A c.-14-409T>A	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36572882
chr11:36572910	T T	G G	1	a0002c0003t0004g0005 a0002c0003t0004g0005	9	HG03239.hp2 NA18949.hp2 NA18955.hp1 others(6): Show HG03239.hp2 NA18949.hp2 NA18955.hp1 NA18967.hp1 NA18977.hp1 NA18984.hp1 NA18995.hp2 NA19010.hp1 NA19090.hp2	intron_variant	MODIFIER	c.-14-381T>G c.-14-381T>G	RAG1	ENSG00000166349.11	transcript	ENST00000299440.6	protein_coding	1/1		chr11	36572910

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🧬 JoGo Online Haplotype Explorer RAG1_chr11_36563007_36584762

JoGo Local Haplotype Explorer (on iGV) RAG1_chr11_36563007_36584762

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 13)

CCoding Level Haplotype Info (Total: 20)

TTranscript Level Haplotype Info (Total: 26)

GGenebody Level Haplotype Info (Total: 38)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 20)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 38)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 67)

Haplotype Details by Sample (Haploid Level) (Total: 390)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 11)

CCoding Level Variants (Synonymous Mutations) (Total: 7)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 31)

GGenebody Level Haplotype Variants (Intron) (Total: 42)

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Annotation (Repeats)

Annotation (SNP Array)