JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAG1_chr11_36563007_36584762	0/1	a0003	1043	110	11	12	72	1	13	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0004	1043	8	8	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0005	1043	5	5	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0006	1043	2	0	0	2	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0007	1043	2	0	0	2	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0008	1043	2	2	0	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0009	1043	1	0	0	0	0	1	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0010	1043	1	0	1	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0011	1043	1	0	0	1	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0012	1043	1	0	1	0	0	0	copy fasta	RAG1	chr11	36563007	36584762
RAG1_chr11_36563007_36584762	0/0	a0013	1043	1	0	0	0	0	1	copy fasta	RAG1	chr11	36563007	36584762
RAG2_chr11_36586943_36603236	1/1	a0001	527	407	84	77	189	14	41	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	a0002	527	10	10	0	0	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	a0003	527	1	0	0	0	0	1	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	a0004	527	1	0	0	1	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAG2_chr11_36586943_36603236	0/0	a0005	527	1	0	1	0	0	0	copy fasta	RAG2	chr11	36586943	36603236
RAI14_chr5_34651328_34837612	1/1	a0001	980	127	56	20	37	4	8	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	a0002	980	98	25	23	33	4	13	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	a0003	980	17	1	3	8	2	3	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	a0004	980	3	3	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	a0005	980	3	0	0	0	2	1	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	a0006	980	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	a0007	980	1	0	0	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	a0008	980	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	a0009	980	1	0	0	1	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	a0010	980	1	0	0	0	0	1	copy fasta	RAI14	chr5	34651328	34837612
RAI14_chr5_34651328_34837612	0/0	a0011	980	1	1	0	0	0	0	copy fasta	RAI14	chr5	34651328	34837612
RAI1_chr17_17676458_17816453	0/1	a0001	1905	124	38	21	47	3	14	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	1/0	a0002	1906	69	18	30	10	7	3	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0003	1906	14	8	4	1	0	1	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0004	1905	11	7	1	1	1	1	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0005	1905	8	8	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0006	1903	4	0	0	4	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0007	1904	4	4	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0008	1905	3	0	3	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0009	1902	2	0	1	0	1	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0010	1906	2	0	1	0	0	1	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0011	1905	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0012	1905	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0013	1905	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0014	1905	1	0	0	1	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0015	1905	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0016	1905	1	0	1	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0017	1905	1	0	0	1	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0018	1901	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0019	1905	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0020	1906	1	0	0	1	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI1_chr17_17676458_17816453	0/0	a0021	1905	1	1	0	0	0	0	copy fasta	RAI1	chr17	17676458	17816453
RAI2_chrX_17795049_17866298	0/1	a0001	530	175	49	31	69	5	20	copy fasta	RAI2	chrX	17795049	17866298
RAI2_chrX_17795049_17866298	1/0	a0002	530	1	0	0	0	0	0	copy fasta	RAI2	chrX	17795049	17866298