JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RANBP2_chr2_108714482_108790809	0/0	a0006	3224	4	4	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0007	3224	4	4	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0008	3224	3	3	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0009	3224	3	0	1	1	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0010	3224	2	2	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0011	3224	2	2	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0012	3224	1	0	0	1	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0013	3224	1	0	1	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0014	3224	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0015	3224	1	0	0	0	1	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0016	3224	1	0	0	1	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0017	3224	1	0	0	0	0	1	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0018	3224	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0019	3224	1	0	1	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0020	3224	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0021	3224	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0022	3224	1	0	0	1	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP2_chr2_108714482_108790809	0/0	a0023	3224	1	1	0	0	0	0	copy fasta	RANBP2	chr2	108714482	108790809
RANBP3L_chr5_36241913_36306902	0/1	a0001	465	250	26	50	129	10	34	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	1/0	a0002	465	100	33	14	51	0	1	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	a0003	465	22	20	2	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	a0004	465	5	5	0	0	0	0	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3L_chr5_36241913_36306902	0/0	a0005	371	1	0	0	0	0	1	copy fasta	RANBP3L	chr5	36241913	36306902
RANBP3_chr19_5911139_5983140	1/1	a0001	567	316	88	65	119	8	34	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	a0002	567	4	3	1	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	a0003	567	1	0	0	1	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP3_chr19_5911139_5983140	0/0	a0004	567	1	1	0	0	0	0	copy fasta	RANBP3	chr19	5911139	5983140
RANBP6_chr9_6006025_6020624	1/1	a0001	1105	405	87	73	186	14	43	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	a0002	1105	2	2	0	0	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	a0003	1105	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	a0004	1105	1	0	1	0	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	a0005	1105	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	a0006	1105	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	a0007	1105	1	1	0	0	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	a0008	1105	1	0	0	1	0	0	copy fasta	RANBP6	chr9	6006025	6020624
RANBP6_chr9_6006025_6020624	0/0	a0009	1105	1	0	0	0	0	1	copy fasta	RANBP6	chr9	6006025	6020624
RANBP9_chr6_13616498_13716835	1/1	a0001	729	342	83	71	138	14	34	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	a0002	730	15	1	1	13	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	a0003	729	1	0	0	1	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	a0004	729	1	1	0	0	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANBP9_chr6_13616498_13716835	0/0	a0005	729	1	1	0	0	0	0	copy fasta	RANBP9	chr6	13616498	13716835
RANGAP1_chr22_41239779_41291187	1/1	a0001	587	340	78	56	152	14	38	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	a0002	587	7	6	1	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	a0003	587	3	2	1	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	a0004	587	2	0	0	0	0	2	copy fasta	RANGAP1	chr22	41239779	41291187
RANGAP1_chr22_41239779_41291187	0/0	a0005	587	2	2	0	0	0	0	copy fasta	RANGAP1	chr22	41239779	41291187
RANGRF_chr17_8283670_8295087	1/1	a0001	186	384	88	70	172	18	34	copy fasta	RANGRF	chr17	8283670	8295087
RAN_chr12_130867066_130882678	1/1	a0001	216	426	94	80	192	14	44	copy fasta	RAN	chr12	130867066	130882678
RAP1A_chr1_111614789_111721691	1/1	a0001	184	380	86	56	182	14	40	copy fasta	RAP1A	chr1	111614789	111721691
RAP1B_chr12_68605899_68676901	1/1	a0001	184	388	82	66	184	12	42	copy fasta	RAP1B	chr12	68605899	68676901