JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATG2A_chr11_64889546_64922209	0/0	a0005	1938	6	0	0	6	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0006	1938	6	0	0	6	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0007	1938	5	5	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0008	1938	5	1	2	0	1	1	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0009	1938	4	0	0	4	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0010	1938	3	3	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	1/0	a0011	1938	3	2	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0012	1938	3	3	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0013	1938	3	0	0	3	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0014	1938	2	2	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0015	1938	2	0	0	2	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0016	1938	2	2	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0017	1938	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0018	1938	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0019	265	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0020	1938	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0021	1938	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0022	1938	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0023	1938	1	0	0	0	1	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0024	1938	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0025	1938	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0026	1938	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0027	1938	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0028	1938	1	1	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0029	1585	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0030	1938	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0031	1938	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0032	1938	1	0	1	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0033	1938	1	0	0	1	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2B_chr14_96274195_96368341	0/0	a0001	2078	177	46	33	72	6	20	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/1	a0002	2078	78	14	14	38	3	8	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	1/0	a0003	2078	35	0	3	27	0	4	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0004	2078	12	0	0	8	0	4	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0005	2078	11	9	2	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0006	2078	8	8	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0007	2078	6	0	5	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0008	2078	3	3	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0009	2078	2	2	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0010	2078	2	2	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0011	2078	2	0	0	2	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0012	2078	2	0	2	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0013	2078	2	0	0	0	0	2	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0014	2078	2	1	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0015	2078	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0016	2078	1	0	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0017	2078	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0018	2078	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0019	2078	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0020	2078	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0021	2078	1	0	0	1	0	0	copy fasta	ATG2B	chr14	96274195	96368341