JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATG2B_chr14_96274195_96368341	0/0	a0022	2078	1	0	0	0	1	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0023	2078	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0024	2078	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0025	2078	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0026	2078	1	0	0	0	0	1	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0027	2078	1	1	0	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG2B_chr14_96274195_96368341	0/0	a0028	2078	1	0	1	0	0	0	copy fasta	ATG2B	chr14	96274195	96368341
ATG3_chr3_112527510_112566962	1/1	a0001	314	374	88	58	174	14	38	copy fasta	ATG3	chr3	112527510	112566962
ATG3_chr3_112527510_112566962	0/0	a0002	314	1	0	1	0	0	0	copy fasta	ATG3	chr3	112527510	112566962
ATG3_chr3_112527510_112566962	0/0	a0003	314	1	0	1	0	0	0	copy fasta	ATG3	chr3	112527510	112566962
ATG4A_chrX_108086778_108159671	1/1	a0001	398	245	66	47	89	13	28	copy fasta	ATG4A	chrX	108086778	108159671
ATG4A_chrX_108086778_108159671	0/0	a0002	398	4	4	0	0	0	0	copy fasta	ATG4A	chrX	108086778	108159671
ATG4B_chr2_241632693_241678857	0/1	a0001	393	324	70	57	151	11	34	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	1/0	a0002	393	58	4	7	37	3	6	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	a0003	393	25	13	1	7	2	2	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	a0004	393	1	0	0	1	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	a0005	393	1	0	1	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4B_chr2_241632693_241678857	0/0	a0006	393	1	1	0	0	0	0	copy fasta	ATG4B	chr2	241632693	241678857
ATG4C_chr1_62779132_62870516	1/1	a0001	458	319	83	69	128	10	27	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	a0002	458	1	1	0	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	a0003	458	1	0	1	0	0	0	copy fasta	ATG4C	chr1	62779132	62870516
ATG4C_chr1_62779132_62870516	0/0	a0004	458	1	0	0	0	0	1	copy fasta	ATG4C	chr1	62779132	62870516
ATG4D_chr19_10538904_10558418	1/1	a0001	474	403	83	78	176	16	48	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	a0002	474	1	1	0	0	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	a0003	474	1	0	0	1	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG4D_chr19_10538904_10558418	0/0	a0004	474	1	0	0	1	0	0	copy fasta	ATG4D	chr19	10538904	10558418
ATG5_chr6_106179476_106330760	1/1	a0001	275	350	70	56	172	14	36	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	a0002	275	6	0	0	6	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG5_chr6_106179476_106330760	0/0	a0003	275	2	2	0	0	0	0	copy fasta	ATG5	chr6	106179476	106330760
ATG7_chr3_11267397_11562665	1/1	a0001	703	273	86	50	98	8	29	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	a0002	703	13	7	5	0	0	1	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	a0003	703	2	0	2	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	a0004	703	1	0	1	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	a0005	703	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	a0006	703	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG7_chr3_11267397_11562665	0/0	a0007	703	1	1	0	0	0	0	copy fasta	ATG7	chr3	11267397	11562665
ATG9A_chr2_219214380_219234636	1/1	a0001	839	311	77	68	120	16	28	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	a0002	839	26	4	8	8	0	6	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	a0003	839	2	0	0	2	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	a0004	839	2	2	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	a0005	839	2	2	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	a0006	839	2	0	2	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	a0007	839	1	0	0	1	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	a0008	839	1	1	0	0	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9A_chr2_219214380_219234636	0/0	a0009	839	1	0	0	1	0	0	copy fasta	ATG9A	chr2	219214380	219234636
ATG9B_chr7_151010151_151029494	1/1	a0001	924	294	49	58	126	17	42	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0002	924	65	24	8	29	1	3	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0003	924	31	1	3	25	0	2	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0004	924	13	0	0	13	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0005	924	13	0	0	13	0	0	copy fasta	ATG9B	chr7	151010151	151029494