JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RGP1_chr9_35744287_35763585	0/0	a0004	391	1	0	0	0	0	1	copy fasta	RGP1	chr9	35744287	35763585
RGPD1_chr2_86937118_87018976	0/0	a0001	1756	83	4	22	38	10	9	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	a0002	1756	4	0	0	3	0	1	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	a0003	1756	3	2	0	1	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	a0004	1756	3	0	3	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	a0005	1756	2	0	0	2	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	a0006	1756	2	0	0	2	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	a0007	1732	1	0	0	0	0	1	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	a0008	1756	1	0	0	0	0	1	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	a0009	1756	1	1	0	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	a0010	1756	1	1	0	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD1_chr2_86937118_87018976	0/0	a0011	1756	1	0	1	0	0	0	copy fasta	RGPD1	chr2	86937118	87018976
RGPD2_chr2_87750960_87830796	0/0	a0001	1756	127	31	36	30	7	23	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0002	1756	17	17	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0003	1756	9	0	4	4	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0004	1756	6	0	2	4	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0005	1756	2	0	1	0	1	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0006	1756	2	0	1	0	1	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0007	1756	2	2	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0008	1756	2	1	1	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0009	1756	1	0	1	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0010	1756	1	0	0	0	1	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0011	1756	1	0	1	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0012	1756	1	0	0	0	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0013	1756	1	0	1	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0014	1756	1	0	0	0	0	1	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0015	1756	1	1	0	0	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0016	1756	1	0	0	1	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD2_chr2_87750960_87830796	0/0	a0017	1756	1	0	0	1	0	0	copy fasta	RGPD2	chr2	87750960	87830796
RGPD3_chr2_106398406_106473413	0/0	a0000	0	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0001	1758	91	17	28	25	6	15	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0002	1758	61	3	16	38	0	4	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	1/1	a0003	1758	42	23	9	0	5	3	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0004	1758	42	6	4	27	1	4	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0005	1758	26	7	7	5	1	6	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0006	1758	22	2	1	15	1	3	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0007	1758	15	0	2	13	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0008	1758	8	0	0	4	0	4	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0009	1758	7	4	2	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0010	1758	6	6	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0011	1758	6	6	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0012	1758	4	4	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0013	1758	4	0	3	0	1	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0014	1758	4	0	0	1	1	2	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0015	1758	4	0	4	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0016	1758	3	0	0	3	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0017	1758	3	3	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0018	1758	3	3	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0019	1758	2	0	0	2	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0020	1758	2	0	0	2	0	0	copy fasta	RGPD3	chr2	106398406	106473413