JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RGPD3_chr2_106398406_106473413	0/0	a0021	1758	2	0	0	2	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0022	1758	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0023	803	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0024	1758	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0025	1758	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0026	1758	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0027	1758	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0028	1758	1	0	1	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0029	1758	1	0	0	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0030	1758	1	0	0	0	0	1	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0031	1758	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0032	1641	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0033	1758	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0034	1758	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0035	1758	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0036	1758	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0037	1758	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0038	1758	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0039	1758	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0040	1758	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0041	1758	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0042	1758	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0043	1758	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0044	1758	1	0	0	1	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD3_chr2_106398406_106473413	0/0	a0045	1758	1	1	0	0	0	0	copy fasta	RGPD3	chr2	106398406	106473413
RGPD4_chr2_107821892_107897544	1/0	a0001	1758	110	3	24	77	2	3	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0002	1758	54	6	0	40	1	7	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/1	a0003	1758	53	10	13	12	4	13	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0004	1758	28	12	4	3	2	7	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0005	1758	23	8	7	4	1	3	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0006	55	18	16	2	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0007	1758	8	0	0	8	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0008	1758	8	1	4	0	0	3	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0009	1758	4	0	4	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0010	1758	4	4	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0011	1758	3	3	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0012	1758	3	0	0	3	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0013	1758	2	0	0	2	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0014	1758	2	0	1	0	1	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0015	1758	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0016	1758	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0017	1758	2	0	0	2	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0018	1758	2	0	2	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0019	1758	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0020	1758	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0021	1758	2	0	2	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0022	55	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0023	1758	2	2	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0024	1758	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0025	1758	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544