JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RGPD5_chr2_109789305_109862705	0/0	a0017	1765	1	0	0	1	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0018	1765	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD6_chr2_110508802_110582222	0/0	a0001	1765	1	0	1	0	0	0	copy fasta	RGPD6	chr2	110508802	110582222
RGPD6_chr2_110508802_110582222	0/0	a0002	1765	1	0	1	0	0	0	copy fasta	RGPD6	chr2	110508802	110582222
RGPD8_chr2_112363369_112438645	0/0	a0001	1765	125	22	20	74	3	6	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0002	1765	33	2	15	6	3	7	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0003	1765	14	0	0	14	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0004	1765	13	4	1	8	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0005	1765	12	12	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0006	1765	6	5	1	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0007	1765	5	5	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0008	1765	5	5	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0009	1765	5	0	2	0	2	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0010	1765	3	3	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0011	1765	2	2	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0012	1765	2	0	0	2	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0013	1765	2	0	2	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0014	1765	2	0	0	1	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0015	1765	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0016	1765	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0017	1765	1	0	1	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0018	1765	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0019	1765	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0020	1765	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0021	1765	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0022	1765	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0023	1765	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0024	1765	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0025	1765	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0026	1765	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0027	1765	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0028	1765	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0029	1765	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0030	1765	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0031	1765	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0032	1765	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0033	1765	1	0	1	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0034	1765	1	0	1	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0035	1765	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0036	1765	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0037	1765	1	0	0	1	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0038	1765	1	1	0	0	0	0	copy fasta	RGPD8	chr2	112363369	112438645
RGPD8_chr2_112363369_112438645	0/0	a0039	1765	1	0	0	0	0	1	copy fasta	RGPD8	chr2	112363369	112438645
RGR_chr10_84240053_84264960	1/1	a0001	291	387	96	70	163	15	41	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	a0002	291	36	1	9	19	1	6	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	a0003	291	1	1	0	0	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	a0004	291	1	0	1	0	0	0	copy fasta	RGR	chr10	84240053	84264960
RGR_chr10_84240053_84264960	0/0	a0005	291	1	0	0	0	0	1	copy fasta	RGR	chr10	84240053	84264960
RGS10_chr10_119494817_119547719	1/0	a0001	181	388	94	66	168	11	48	copy fasta	RGS10	chr10	119494817	119547719
RGS10_chr10_119494817_119547719	0/0	a0002	181	4	0	0	4	0	0	copy fasta	RGS10	chr10	119494817	119547719