JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RIC8B_chr12_106769682_106894316	1/1	a0001	560	312	77	75	108	16	34	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	a0002	560	4	3	1	0	0	0	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	a0003	560	1	0	0	0	0	1	copy fasta	RIC8B	chr12	106769682	106894316
RIC8B_chr12_106769682_106894316	0/0	a0004	560	1	0	0	0	0	1	copy fasta	RIC8B	chr12	106769682	106894316
RICTOR_chr5_38932920_39079399	1/1	a0001	1708	176	53	26	67	7	21	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	a0002	1708	144	27	19	75	7	16	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	a0003	1708	10	1	0	3	0	6	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	a0004	1708	1	1	0	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	a0005	1708	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	a0006	1708	1	0	1	0	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	a0007	1708	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	a0008	1708	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	a0009	1708	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	a0010	1708	1	0	0	0	0	1	copy fasta	RICTOR	chr5	38932920	39079399
RICTOR_chr5_38932920_39079399	0/0	a0011	1708	1	0	0	1	0	0	copy fasta	RICTOR	chr5	38932920	39079399
RIDA_chr8_98097344_98122171	1/1	a0001	137	457	91	80	218	18	48	copy fasta	RIDA	chr8	98097344	98122171
RIDA_chr8_98097344_98122171	0/0	a0002	137	1	1	0	0	0	0	copy fasta	RIDA	chr8	98097344	98122171
RIF1_chr2_151404902_151487172	0/1	a0001	2472	206	20	40	113	11	21	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	1/0	a0002	2472	109	34	17	37	6	14	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0003	2472	16	15	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0004	2472	7	0	0	7	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0005	2472	6	4	0	0	1	1	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0006	2472	4	0	0	4	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0007	2472	4	0	0	4	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0008	2472	4	3	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0009	2472	3	0	3	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0010	2472	2	2	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0011	2472	2	0	2	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0012	2472	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0013	2472	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0014	2472	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0015	2472	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0016	2472	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0017	2472	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0018	2472	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0019	2472	1	1	0	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0020	2472	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0021	2472	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0022	2472	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0023	2472	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0024	2472	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0025	2472	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0026	2472	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0027	2472	1	0	0	1	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIF1_chr2_151404902_151487172	0/0	a0028	2472	1	0	1	0	0	0	copy fasta	RIF1	chr2	151404902	151487172
RIGI_chr9_32450302_32531196	1/0	a0001	925	242	55	45	101	9	31	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	a0002	925	43	12	14	11	4	2	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	a0003	925	23	8	3	10	0	2	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/1	a0004	925	19	2	7	6	3	0	copy fasta	RIGI	chr9	32450302	32531196
RIGI_chr9_32450302_32531196	0/0	a0005	925	6	4	2	0	0	0	copy fasta	RIGI	chr9	32450302	32531196