JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RITA1_chr12_113180721_113197368	0/0	a0005	190	1	0	0	1	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	a0006	269	1	1	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RITA1_chr12_113180721_113197368	0/0	a0007	269	1	1	0	0	0	0	copy fasta	RITA1	chr12	113180721	113197368
RLBP1_chr15_89204869_89226579	1/1	a0001	317	408	98	65	181	16	46	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	a0002	317	3	0	0	3	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	a0003	317	2	1	1	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLBP1_chr15_89204869_89226579	0/0	a0004	317	1	1	0	0	0	0	copy fasta	RLBP1	chr15	89204869	89226579
RLF_chr1_40156387_40245921	1/1	a0001	1914	212	44	30	101	7	28	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0002	1914	64	31	8	17	6	2	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0003	1914	16	15	1	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0004	1914	15	1	0	6	0	8	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0005	1914	13	0	1	12	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0006	1914	3	0	0	3	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0007	1914	2	0	0	1	0	1	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0008	1914	2	2	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0009	1914	2	2	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0010	1914	2	2	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0011	1914	1	0	0	1	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0012	1914	1	0	0	1	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0013	1914	1	0	0	0	1	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0014	1914	1	0	0	1	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0015	1914	1	0	0	0	0	1	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0016	1914	1	1	0	0	0	0	copy fasta	RLF	chr1	40156387	40245921
RLF_chr1_40156387_40245921	0/0	a0017	1914	1	0	0	1	0	0	copy fasta	RLF	chr1	40156387	40245921
RLIG1_chr12_88030536_88055160	1/0	a0001	325	199	78	34	72	4	10	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/1	a0002	325	150	12	29	86	6	16	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	a0003	325	4	0	0	4	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIG1_chr12_88030536_88055160	0/0	a0004	325	3	0	3	0	0	0	copy fasta	RLIG1	chr12	88030536	88055160
RLIM_chrX_74577976_74619624	1/1	a0001	624	236	60	48	89	7	30	copy fasta	RLIM	chrX	74577976	74619624
RLIM_chrX_74577976_74619624	0/0	a0002	618	1	0	0	1	0	0	copy fasta	RLIM	chrX	74577976	74619624
RLN1_chr9_5329930_5344876	1/1	a0001	185	420	80	77	197	16	48	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	a0002	185	15	2	0	13	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	a0003	185	6	6	0	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	a0004	185	3	3	0	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	a0005	185	2	1	1	0	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	a0006	185	1	0	0	1	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN1_chr9_5329930_5344876	0/0	a0007	185	1	0	0	1	0	0	copy fasta	RLN1	chr9	5329930	5344876
RLN2_chr9_5294864_5309716	1/1	a0001	185	432	86	69	218	16	41	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	a0002	185	7	7	0	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	a0003	100	4	2	1	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	a0004	185	2	0	0	2	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	a0005	6	1	0	0	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	a0006	185	1	0	0	0	0	1	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	a0007	185	1	1	0	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	a0008	185	1	0	0	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	a0009	185	1	0	1	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	a0010	185	1	0	0	1	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN2_chr9_5294864_5309716	0/0	a0011	185	1	0	1	0	0	0	copy fasta	RLN2	chr9	5294864	5309716
RLN3_chr19_14023148_14036551	1/1	a0001	142	348	83	68	145	15	35	copy fasta	RLN3	chr19	14023148	14036551
RLN3_chr19_14023148_14036551	0/0	a0002	142	75	7	7	49	1	11	copy fasta	RLN3	chr19	14023148	14036551