JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPS14_chr5_150437635_150454739	1/1	a0001	151	414	90	74	198	12	38	copy fasta	RPS14	chr5	150437635	150454739
RPS15A_chr16_18776295_18795334	1/1	a0001	130	349	95	64	134	14	40	copy fasta	RPS15A	chr16	18776295	18795334
RPS15A_chr16_18776295_18795334	0/0	a0002	130	1	1	0	0	0	0	copy fasta	RPS15A	chr16	18776295	18795334
RPS15_chr19_1433396_1445495	1/1	a0001	145	380	98	78	142	18	42	copy fasta	RPS15	chr19	1433396	1445495
RPS16_chr19_39428137_39440949	1/1	a0001	146	410	94	66	186	14	48	copy fasta	RPS16	chr19	39428137	39440949
RPS17_chr15_82531750_82545457	0/1	a0001	135	455	100	76	216	18	44	copy fasta	RPS17	chr15	82531750	82545457
RPS18_chr6_33267075_33281511	0/1	a0001	152	375	96	70	158	14	36	copy fasta	RPS18	chr6	33267075	33281511
RPS19BP1_chr22_39524093_39537748	1/1	a0001	136	328	88	64	114	18	42	copy fasta	RPS19BP1	chr22	39524093	39537748
RPS19_chr19_41855255_41877925	1/1	a0001	145	390	86	62	186	16	38	copy fasta	RPS19	chr19	41855255	41877925
RPS20_chr8_56068054_56079506	0/1	a0001	119	331	86	68	120	14	42	copy fasta	RPS20	chr8	56068054	56079506
RPS21_chr20_62382103_62393520	0/0	a0001	83	412	98	82	174	16	42	copy fasta	RPS21	chr20	62382103	62393520
RPS23_chr5_82268320_82283354	1/1	a0001	143	418	94	76	184	16	46	copy fasta	RPS23	chr5	82268320	82283354
RPS24_chr10_78028863_78045697	1/1	a0001	130	429	96	80	193	14	44	copy fasta	RPS24	chr10	78028863	78045697
RPS24_chr10_78028863_78045697	0/0	a0002	138	1	0	0	1	0	0	copy fasta	RPS24	chr10	78028863	78045697
RPS25_chr11_119010717_119023343	1/0	a0001	125	355	96	72	134	14	38	copy fasta	RPS25	chr11	119010717	119023343
RPS26_chr12_56036918_56049697	1/1	a0001	115	378	84	70	174	16	32	copy fasta	RPS26	chr12	56036918	56049697
RPS27A_chr2_55227688_55240853	1/1	a0001	156	439	92	82	210	17	36	copy fasta	RPS27A	chr2	55227688	55240853
RPS27A_chr2_55227688_55240853	0/0	a0002	156	1	0	0	0	1	0	copy fasta	RPS27A	chr2	55227688	55240853
RPS27L_chr15_63143249_63162477	1/1	a0001	84	430	98	76	194	16	44	copy fasta	RPS27L	chr15	63143249	63162477
RPS27_chr1_153985762_153997155	0/0	a0001	84	402	84	76	188	12	42	copy fasta	RPS27	chr1	153985762	153997155
RPS28_chr19_8316496_8328340	1/1	a0001	69	404	90	80	174	18	40	copy fasta	RPS28	chr19	8316496	8328340
RPS29_chr14_49578577_49591380	1/0	a0001	56	335	94	76	110	16	38	copy fasta	RPS29	chr14	49578577	49591380
RPS2_chr16_1957058_1969826	1/1	a0001	293	436	98	80	192	14	50	copy fasta	RPS2	chr16	1957058	1969826
RPS2_chr16_1957058_1969826	0/0	a0002	293	2	0	0	2	0	0	copy fasta	RPS2	chr16	1957058	1969826
RPS3A_chr4_151094628_151109642	1/1	a0001	264	389	90	72	171	10	44	copy fasta	RPS3A	chr4	151094628	151109642
RPS3A_chr4_151094628_151109642	0/0	a0002	264	1	0	0	1	0	0	copy fasta	RPS3A	chr4	151094628	151109642
RPS3_chr11_75394518_75411907	1/1	a0001	243	411	84	77	182	18	48	copy fasta	RPS3	chr11	75394518	75411907
RPS3_chr11_75394518_75411907	0/0	a0002	243	1	0	1	0	0	0	copy fasta	RPS3	chr11	75394518	75411907
RPS4X_chrX_72267042_72282248	1/1	a0001	263	313	76	53	145	7	30	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	a0002	139	1	0	0	1	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	a0003	157	1	0	0	1	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4X_chrX_72267042_72282248	0/0	a0004	157	1	0	0	1	0	0	copy fasta	RPS4X	chrX	72267042	72282248
RPS4Y1_chrY_2836602_2872268	1/1	a0001	263	128	18	20	67	5	16	copy fasta	RPS4Y1	chrY	2836602	2872268
RPS4Y1_chrY_2836602_2872268	0/0	a0002	142	1	0	0	1	0	0	copy fasta	RPS4Y1	chrY	2836602	2872268
RPS4Y2_chrY_20751108_20786032	1/1	a0001	263	130	17	20	70	5	16	copy fasta	RPS4Y2	chrY	20751108	20786032
RPS4Y2_chrY_20751108_20786032	0/0	a0002	263	1	1	0	0	0	0	copy fasta	RPS4Y2	chrY	20751108	20786032
RPS5_chr19_58382269_58399804	1/1	a0001	204	432	96	82	190	18	44	copy fasta	RPS5	chr19	58382269	58399804
RPS6KA1_chr1_26524761_26580025	1/1	a0001	735	261	90	52	77	13	27	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	a0002	735	67	1	14	36	1	15	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	a0003	735	1	1	0	0	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA1_chr1_26524761_26580025	0/0	a0004	735	1	0	0	1	0	0	copy fasta	RPS6KA1	chr1	26524761	26580025
RPS6KA2_chr6_166404364_166632251	1/1	a0001	733	244	86	60	76	6	14	copy fasta	RPS6KA2	chr6	166404364	166632251
RPS6KA3_chrX_20144911_20271909	0/0	a0000	0	1	0	0	1	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	1/1	a0001	740	209	63	43	72	9	20	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	a0002	449	1	0	0	1	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA3_chrX_20144911_20271909	0/0	a0003	740	1	1	0	0	0	0	copy fasta	RPS6KA3	chrX	20144911	20271909
RPS6KA4_chr11_64354162_64377215	1/1	a0001	772	294	90	46	116	11	29	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	a0002	772	106	5	28	50	5	18	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	a0003	772	1	0	0	0	0	1	copy fasta	RPS6KA4	chr11	64354162	64377215
RPS6KA4_chr11_64354162_64377215	0/0	a0004	772	1	1	0	0	0	0	copy fasta	RPS6KA4	chr11	64354162	64377215