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geneid	140032
ensemblid	ENSG00000280969.2
hgncid	18501
symbol	RPS4Y2
name	ribosomal protein S4 Y-linked 2
refseq_nuc	NM_001039567.3
refseq_prot	NP_001034656.1
ensembl_nuc	ENST00000629237.2
ensembl_prot	ENSP00000486252.1
mane_status	MANE Select
chr	chrY
start	20756108
end	20781032
strand	+
ver	v1.2
region	chrY:20756108-20781032
region5000	chrY:20751108-20786032
regionname0	RPS4Y2_chrY_20756108_20781032
regionname5000	RPS4Y2_chrY_20751108_20786032

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	263	130	17	20	70	5	16	55	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032
a0002	0/0	263	1	1	0	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	792	126	17	20	69	3	15	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032
c0002	0/0	792	2	0	0	1	1	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032
c0003	0/0	792	2	0	0	0	1	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032
c0004	0/0	792	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	57	131	18	20	70	5	16	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/0	13	0	5	0	1	6	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0002	0/0	12	1	4	3	1	3	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0003	0/0	12	0	0	12	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0004	0/0	8	0	0	8	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0005	0/0	8	8	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0006	0/0	7	0	0	7	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0007	0/0	3	0	1	1	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0008	0/0	3	0	0	3	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0009	0/0	3	0	0	1	1	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0010	0/0	2	0	0	2	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0011	0/0	2	0	0	2	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0012	0/0	2	0	0	2	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0013	0/1	2	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0014	0/0	2	0	0	2	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0015	0/0	2	0	2	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0016	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0017	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0018	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0019	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0020	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0021	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0022	0/0	1	0	0	0	1	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0023	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0024	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0025	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0026	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0027	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0028	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0029	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0030	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0031	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0032	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0033	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0034	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0035	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0036	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0037	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0038	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0039	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0040	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0041	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0042	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0043	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0044	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0045	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0046	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0047	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0048	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0049	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0050	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0051	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0052	0/0	1	0	0	0	1	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0053	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0054	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0055	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0056	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0057	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0058	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0059	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0060	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0061	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0062	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0063	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0064	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
g0065	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	792	126	17	20	69	3	15	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032
a0001c0002	0/0	792	2	0	0	1	1	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032
a0001c0003	0/0	792	2	0	0	0	1	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032
a0002c0004	0/0	792	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	848	126	17	20	69	3	15	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032
a0001c0002t0001	0/0	848	2	0	0	1	1	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032
a0001c0003t0001	0/0	848	2	0	0	0	1	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032
a0002c0004t0001	0/0	848	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	copy fasta	chrY	20751108	20786032

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/0	13	0	5	0	1	6	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0002	0/0	10	0	4	3	0	3	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0003	0/0	12	0	0	12	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0004	0/0	8	0	0	8	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0005	0/0	8	8	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0006	0/0	7	0	0	7	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0007	0/0	2	0	1	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0008	0/0	3	0	0	3	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0009	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0010	0/0	2	0	0	2	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0011	0/0	2	0	0	2	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0012	0/0	2	0	0	2	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0013	0/1	2	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0014	0/0	2	0	0	2	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0015	0/0	2	0	2	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0016	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0017	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0018	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0019	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0020	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0021	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0022	0/0	1	0	0	0	1	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0023	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0024	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0026	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0027	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0028	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0029	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0030	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0031	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0032	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0033	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0034	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0035	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0036	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0037	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0038	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0039	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0040	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0041	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0042	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0043	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0044	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0045	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0046	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0047	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0048	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0049	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0050	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0051	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0052	0/0	1	0	0	0	1	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0053	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0054	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0055	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0056	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0057	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0058	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0059	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0060	0/0	1	0	0	1	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0061	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0062	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0063	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0064	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0001t0001g0065	0/0	1	0	1	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0002t0001g0009	0/0	2	0	0	1	1	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0003t0001g0002	0/0	1	0	0	0	1	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0001c0003t0001g0007	0/0	1	0	0	0	0	1	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
a0002c0004t0001g0002	0/0	1	1	0	0	0	0	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0022	EUR	GBR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG00280	hp1	a0001	c0002	t0001	g0009	EUR	FIN	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG00609	hp1	a0001	c0001	t0001	g0008	EAS	CHS	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG00621	hp1	a0001	c0001	t0001	g0006	EAS	CHS	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG00673	hp1	a0001	c0001	t0001	g0008	EAS	CHS	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01069	hp1	a0001	c0001	t0001	g0028	AMR	PUR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01074	hp1	a0001	c0001	t0001	g0015	AMR	PUR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01099	hp1	a0001	c0001	t0001	g0007	AMR	PUR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01106	hp1	a0001	c0001	t0001	g0065	AMR	PUR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01109	hp1	a0001	c0001	t0001	g0015	AMR	PUR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01167	hp1	a0001	c0001	t0001	g0021	AMR	PUR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01192	hp1	a0001	c0001	t0001	g0043	AMR	PUR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01255	hp1	a0001	c0001	t0001	g0002	AMR	CLM	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01256	hp1	a0001	c0001	t0001	g0047	AMR	CLM	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01258	hp1	a0001	c0001	t0001	g0002	AMR	CLM	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01433	hp1	a0001	c0001	t0001	g0029	AMR	CLM	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01515	hp1	a0001	c0001	t0001	g0052	EUR	IBS	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01928	hp1	a0001	c0001	t0001	g0002	AMR	PEL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01934	hp1	a0001	c0001	t0001	g0040	AMR	PEL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01943	hp1	a0001	c0001	t0001	g0027	AMR	PEL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG01952	hp1	a0001	c0001	t0001	g0002	AMR	PEL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02015	hp1	a0001	c0001	t0001	g0002	EAS	KHV	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02027	hp1	a0001	c0001	t0001	g0054	EAS	KHV	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02040	hp1	a0001	c0001	t0001	g0051	EAS	KHV	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02055	hp1	a0001	c0001	t0001	g0062	AFR	ACB	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02056	hp1	a0001	c0001	t0001	g0006	EAS	KHV	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02071	hp1	a0001	c0001	t0001	g0039	EAS	KHV	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02074	hp1	a0001	c0001	t0001	g0016	EAS	KHV	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02083	hp1	a0001	c0001	t0001	g0046	EAS	KHV	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02129	hp1	a0001	c0001	t0001	g0010	EAS	KHV	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02132	hp1	a0001	c0001	t0001	g0048	EAS	KHV	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02135	hp1	a0001	c0001	t0001	g0010	EAS	KHV	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02145	hp1	a0001	c0001	t0001	g0064	AFR	ACB	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02258	hp1	a0001	c0001	t0001	g0005	AFR	ACB	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02572	hp1	a0001	c0001	t0001	g0017	AFR	GWD	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02602	hp1	a0001	c0001	t0001	g0058	SAS	PJL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02647	hp1	a0001	c0001	t0001	g0055	AFR	GWD	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02698	hp1	a0001	c0001	t0001	g0049	SAS	PJL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02717	hp1	a0001	c0001	t0001	g0005	AFR	GWD	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02735	hp1	a0001	c0003	t0001	g0007	SAS	PJL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02895	hp1	a0001	c0001	t0001	g0005	AFR	GWD	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02965	hp1	a0001	c0001	t0001	g0005	AFR	ESN	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03017	hp1	a0001	c0001	t0001	g0053	SAS	PJL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03098	hp1	a0001	c0001	t0001	g0018	AFR	MSL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03130	hp1	a0001	c0001	t0001	g0061	AFR	ESN	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03139	hp1	a0001	c0001	t0001	g0005	AFR	ESN	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03209	hp1	a0001	c0001	t0001	g0005	AFR	MSL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03225	hp1	a0001	c0001	t0001	g0020	AFR	MSL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03579	hp1	a0001	c0001	t0001	g0013	AFR	MSL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03654	hp1	a0001	c0001	t0001	g0009	SAS	PJL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03688	hp1	a0001	c0001	t0001	g0002	SAS	STU	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03710	hp1	a0001	c0001	t0001	g0002	SAS	PJL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03942	hp1	a0001	c0001	t0001	g0019	SAS	BEB	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG04199	hp1	a0001	c0001	t0001	g0002	SAS	STU	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18522	hp1	a0001	c0001	t0001	g0005	AFR	YRI	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18612	hp1	a0001	c0001	t0001	g0011	EAS	CHB	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18747	hp1	a0001	c0002	t0001	g0009	EAS	CHB	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18940	hp1	a0001	c0001	t0001	g0060	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18943	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18944	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18945	hp1	a0001	c0001	t0001	g0006	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18948	hp1	a0001	c0001	t0001	g0030	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18952	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18953	hp1	a0001	c0001	t0001	g0041	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18959	hp1	a0001	c0001	t0001	g0006	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18960	hp1	a0001	c0001	t0001	g0023	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18961	hp1	a0001	c0001	t0001	g0032	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18962	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18965	hp1	a0001	c0001	t0001	g0024	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18966	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18967	hp1	a0001	c0001	t0001	g0034	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18970	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18971	hp1	a0001	c0001	t0001	g0012	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18974	hp1	a0001	c0001	t0001	g0012	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18977	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18982	hp1	a0001	c0001	t0001	g0008	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18983	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18985	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18986	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18988	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18989	hp1	a0001	c0001	t0001	g0044	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18990	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18994	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18995	hp1	a0001	c0001	t0001	g0036	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19000	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19004	hp1	a0001	c0001	t0001	g0031	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19005	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19006	hp1	a0001	c0001	t0001	g0025	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19007	hp1	a0001	c0001	t0001	g0002	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19009	hp1	a0001	c0001	t0001	g0050	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19012	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19043	hp1	a0002	c0004	t0001	g0002	AFR	LWK	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19055	hp1	a0001	c0001	t0001	g0026	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19056	hp1	a0001	c0001	t0001	g0014	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19058	hp1	a0001	c0001	t0001	g0035	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19060	hp1	a0001	c0001	t0001	g0056	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19062	hp1	a0001	c0001	t0001	g0057	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19063	hp1	a0001	c0001	t0001	g0037	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19066	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19067	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19068	hp1	a0001	c0001	t0001	g0004	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19070	hp1	a0001	c0001	t0001	g0002	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19072	hp1	a0001	c0001	t0001	g0006	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19075	hp1	a0001	c0001	t0001	g0007	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19076	hp1	a0001	c0001	t0001	g0045	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19079	hp1	a0001	c0001	t0001	g0011	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19082	hp1	a0001	c0001	t0001	g0038	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19085	hp1	a0001	c0001	t0001	g0006	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19086	hp1	a0001	c0001	t0001	g0006	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19088	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19089	hp1	a0001	c0001	t0001	g0033	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA19091	hp1	a0001	c0001	t0001	g0059	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA20805	hp1	a0001	c0003	t0001	g0002	EUR	TSI	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA20905	hp1	a0001	c0001	t0001	g0042	SAS	GIH	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG02486	hp1	a0001	c0001	t0001	g0063	AFR	ACB	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
HG03471	hp1	a0001	c0001	t0001	g0005	AFR	MSL	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
NA18955	hp1	a0001	c0001	t0001	g0014	EAS	JPT	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0013	REF	REF	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	RPS4Y2_chrY_20751108_20786032	RPS4Y2	chrY	20751108	20786032

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:20759982	A A	G G	1	a0002 a0002	1	NA19043.hp1 NA19043.hp1	missense_variant	MODERATE	c.196A>G c.196A>G	p.Met66Val p.Met66Val	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	3/7	252/848	196/792	66/263			chrY	20759982

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:20759882	G G	A A	1	a0001c0002 a0001c0002	2	HG00280.hp1 NA18747.hp1 HG00280.hp1 NA18747.hp1	synonymous_variant	LOW	c.96G>A c.96G>A	p.Ser32Ser p.Ser32Ser	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	3/7	152/848	96/792	32/263			chrY	20759882
chrY:20781011	T T	C C	1	a0001c0003 a0001c0003	2	HG02735.hp1 NA20805.hp1 HG02735.hp1 NA20805.hp1	synonymous_variant	LOW	c.771T>C c.771T>C	p.Ala257Ala p.Ala257Ala	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	7/7	827/848	771/792	257/263			chrY	20781011

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrY:20756187	C C	CAGTATAG others(299): Show CAGTATAGACAGGGTTTCACTGTGTTGGCCAAGCTTGTGTCAGACTCCTG ACTTCATGAACCACCGACTCTGCCTCCCAAAGTGCTGGGATTACAGGCAT GAGCCACCAAGCCTGGCCTCCAGCTTTTCTTTTCTTTTTCCTTTAACTGT AGAGAGAACACAACACAGTAACATCGACCATTTTTACCAATTTGTAAGCG CGTAACAGTGCCTAAAATGTTTTTGTTGTTATGTTTTGTTTGTCTTTGCA TTCAATTCCTTGATTCAAGTCTATAGGCACTGTATGTGCCAGCTAGCAAG ACAGCAA	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.3+21_3+22insAGTATA others(300): Show c.3+21_3+22insAGTATAGACAGGGTTTCACTGTGTTGGCCAAGCTTG TGTCAGACTCCTGACTTCATGAACCACCGACTCTGCCTCCCAAAGTGCTG GGATTACAGGCATGAGCCACCAAGCCTGGCCTCCAGCTTTTCTTTTCTTT TTCCTTTAACTGTAGAGAGAACACAACACAGTAACATCGACCATTTTTAC CAATTTGTAAGCGCGTAACAGTGCCTAAAATGTTTTTGTTGTTATGTTTT GTTTGTCTTTGCATTCAATTCCTTGATTCAAGTCTATAGGCACTGTATGT GCCAGCTAGCAAGACAGCAA	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	1/6		chrY	20756187
chrY:20756188	T T	G G	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.3+22T>G c.3+22T>G	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	1/6		chrY	20756188
chrY:20756189	C C	G G	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.3+23C>G c.3+23C>G	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	1/6		chrY	20756189
chrY:20756191	G G	A A	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.3+25G>A c.3+25G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	1/6		chrY	20756191
chrY:20756204	TC TC	T T	2	a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0017 a0001c0001t0001g0018	2	HG02572.hp1 HG03098.hp1 HG02572.hp1 HG03098.hp1	intron_variant	MODIFIER	c.3+40delC c.3+40delC	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	1/6	INFO_REALIGN_3_PRIME	chrY	20756204
chrY:20756667	C C	A A	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.4-111C>A c.4-111C>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	1/6		chrY	20756667
chrY:20756691	C C	T T	9	a0001c0001t0001g0005 a0001c0001t0001g0015 a0001c0001t0001g0017 others(6): Show a0001c0001t0001g0005 a0001c0001t0001g0015 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065	17	HG01074.hp1 HG01106.hp1 HG01109.hp1 others(14): Show HG01074.hp1 HG01106.hp1 HG01109.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.4-87C>T c.4-87C>T	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	1/6		chrY	20756691
chrY:20756975	C C	T T	2	a0001c0001t0001g0014 a0001c0001t0001g0060 a0001c0001t0001g0014 a0001c0001t0001g0060	3	NA18940.hp1 NA18955.hp1 NA19056.hp1 NA18940.hp1 NA18955.hp1 NA19056.hp1	intron_variant	MODIFIER	c.81+120C>T c.81+120C>T	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6		chrY	20756975
chrY:20757082	C C	A A	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.81+227C>A c.81+227C>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6		chrY	20757082
chrY:20757151	T T	C C	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.81+296T>C c.81+296T>C	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6		chrY	20757151
chrY:20757362	TAA TAA	T T	1	a0001c0001t0001g0059 a0001c0001t0001g0059	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.81+509_81+510delAA c.81+509_81+510delAA	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20757362
chrY:20757439	G G	GT GT	4	a0001c0001t0001g0009 a0001c0001t0001g0057 a0001c0001t0001g0058 others(1): Show a0001c0001t0001g0009 a0001c0001t0001g0057 a0001c0001t0001g0058 a0001c0002t0001g0009	5	HG00280.hp1 HG02602.hp1 HG03654.hp1 others(2): Show HG00280.hp1 HG02602.hp1 HG03654.hp1 NA18747.hp1 NA19062.hp1	intron_variant	MODIFIER	c.81+604dupT c.81+604dupT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20757439
chrY:20757439	GT GT	G G	9	a0001c0001t0001g0005 a0001c0001t0001g0023 a0001c0001t0001g0024 others(6): Show a0001c0001t0001g0005 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0027 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064	16	HG01943.hp1 HG02055.hp1 HG02145.hp1 others(13): Show HG01943.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1 NA18960.hp1 NA18965.hp1 NA19006.hp1 NA19055.hp1	intron_variant	MODIFIER	c.81+604delT c.81+604delT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20757439
chrY:20757439	GTT GTT	G G	1	a0001c0001t0001g0061 a0001c0001t0001g0061	1	HG03130.hp1 HG03130.hp1	intron_variant	MODIFIER	c.81+603_81+604delTT c.81+603_81+604delTT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20757439
chrY:20757446	T T	G G	2	a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0021 a0001c0001t0001g0022	2	HG00140.hp1 HG01167.hp1 HG00140.hp1 HG01167.hp1	intron_variant	MODIFIER	c.81+591T>G c.81+591T>G	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6		chrY	20757446
chrY:20757714	G G	A A	2	a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0028 a0001c0001t0001g0029	2	HG01069.hp1 HG01433.hp1 HG01069.hp1 HG01433.hp1	intron_variant	MODIFIER	c.81+859G>A c.81+859G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6		chrY	20757714
chrY:20758040	T T	C C	13	a0001c0001t0001g0004 a0001c0001t0001g0014 a0001c0001t0001g0023 others(10): Show a0001c0001t0001g0004 a0001c0001t0001g0014 a0001c0001t0001g0023 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0060	21	NA18940.hp1 NA18944.hp1 NA18948.hp1 others(18): Show NA18940.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18960.hp1 NA18961.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18983.hp1 NA18988.hp1 NA18995.hp1 NA19004.hp1 NA19012.hp1 NA19056.hp1 NA19058.hp1 NA19063.hp1 NA19068.hp1 NA19082.hp1 NA19089.hp1	intron_variant	MODIFIER	c.81+1185T>C c.81+1185T>C	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6		chrY	20758040
chrY:20758137	G G	A A	2	a0001c0001t0001g0010 a0001c0001t0001g0039 a0001c0001t0001g0010 a0001c0001t0001g0039	3	HG02071.hp1 HG02129.hp1 HG02135.hp1 HG02071.hp1 HG02129.hp1 HG02135.hp1	intron_variant	MODIFIER	c.81+1282G>A c.81+1282G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6		chrY	20758137
chrY:20758719	C C	CT CT	9	a0001c0001t0001g0013 a0001c0001t0001g0015 a0001c0001t0001g0020 others(6): Show a0001c0001t0001g0013 a0001c0001t0001g0015 a0001c0001t0001g0020 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0038 a0001c0001t0001g0056 a0001c0001t0001g0064 a0001c0001t0001g0065	11	HG01069.hp1 HG01074.hp1 HG01106.hp1 others(8): Show HG01069.hp1 HG01074.hp1 HG01106.hp1 HG01109.hp1 HG01433.hp1 HG02145.hp1 HG03225.hp1 HG03579.hp1 NA19060.hp1 NA19082.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.82-1124dupT c.82-1124dupT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20758719
chrY:20758719	CT CT	C C	8	a0001c0001t0001g0007 a0001c0001t0001g0021 a0001c0001t0001g0024 others(5): Show a0001c0001t0001g0007 a0001c0001t0001g0021 a0001c0001t0001g0024 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0003t0001g0007	9	HG01099.hp1 HG01167.hp1 HG01934.hp1 others(6): Show HG01099.hp1 HG01167.hp1 HG01934.hp1 HG02735.hp1 NA18948.hp1 NA18953.hp1 NA18965.hp1 NA19004.hp1 NA19075.hp1	intron_variant	MODIFIER	c.82-1124delT c.82-1124delT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6	INFO_REALIGN_3_PRIME	chrY	20758719
chrY:20758768	C C	G G	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.82-1100C>G c.82-1100C>G	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	2/6		chrY	20758768
chrY:20760211	G G	A A	1	a0001c0001t0001g0042 a0001c0001t0001g0042	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.262+163G>A c.262+163G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	3/6		chrY	20760211
chrY:20761168	G G	A A	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.263-116G>A c.263-116G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	3/6		chrY	20761168
chrY:20761736	G G	A A	2	a0001c0001t0001g0011 a0001c0001t0001g0059 a0001c0001t0001g0011 a0001c0001t0001g0059	3	NA18612.hp1 NA19079.hp1 NA19091.hp1 NA18612.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.360+355G>A c.360+355G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6		chrY	20761736
chrY:20762486	G G	A A	2	a0001c0001t0001g0025 a0001c0001t0001g0044 a0001c0001t0001g0025 a0001c0001t0001g0044	2	NA18989.hp1 NA19006.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.360+1105G>A c.360+1105G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6		chrY	20762486
chrY:20764267	C C	CT CT	1	a0001c0001t0001g0054 a0001c0001t0001g0054	1	HG02027.hp1 HG02027.hp1	intron_variant	MODIFIER	c.360+2899dupT c.360+2899dupT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	20764267
chrY:20764673	G G	A A	1	a0001c0001t0001g0032 a0001c0001t0001g0032	1	NA18961.hp1 NA18961.hp1	intron_variant	MODIFIER	c.360+3292G>A c.360+3292G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6		chrY	20764673
chrY:20764789	CT CT	C C	1	a0001c0001t0001g0045 a0001c0001t0001g0045	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.360+3412delT c.360+3412delT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	20764789
chrY:20765118	C C	T T	4	a0001c0001t0001g0003 a0001c0001t0001g0024 a0001c0001t0001g0041 others(1): Show a0001c0001t0001g0003 a0001c0001t0001g0024 a0001c0001t0001g0041 a0001c0001t0001g0056	15	NA18943.hp1 NA18953.hp1 NA18962.hp1 others(12): Show NA18943.hp1 NA18953.hp1 NA18962.hp1 NA18965.hp1 NA18977.hp1 NA18985.hp1 NA18986.hp1 NA18990.hp1 NA18994.hp1 NA19000.hp1 NA19005.hp1 NA19060.hp1 NA19066.hp1 NA19067.hp1 NA19088.hp1	intron_variant	MODIFIER	c.361-3687C>T c.361-3687C>T	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6		chrY	20765118
chrY:20765536	C C	T T	1	a0001c0001t0001g0063 a0001c0001t0001g0063	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.361-3269C>T c.361-3269C>T	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6		chrY	20765536
chrY:20766180	T T	C C	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.361-2625T>C c.361-2625T>C	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6		chrY	20766180
chrY:20766458	C C	G G	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	HG00140.hp1 HG00140.hp1	intron_variant	MODIFIER	c.361-2347C>G c.361-2347C>G	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6		chrY	20766458
chrY:20767807	G G	GA GA	1	a0001c0001t0001g0033 a0001c0001t0001g0033	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.361-984dupA c.361-984dupA	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6	INFO_REALIGN_3_PRIME	chrY	20767807
chrY:20768443	G G	A A	1	a0001c0001t0001g0010 a0001c0001t0001g0010	2	HG02129.hp1 HG02135.hp1 HG02129.hp1 HG02135.hp1	intron_variant	MODIFIER	c.361-362G>A c.361-362G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	4/6		chrY	20768443
chrY:20769171	T T	C C	7	a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 others(4): Show a0001c0001t0001g0006 a0001c0001t0001g0008 a0001c0001t0001g0010 a0001c0001t0001g0039 a0001c0001t0001g0045 a0001c0001t0001g0054 a0001c0001t0001g0057	16	HG00609.hp1 HG00621.hp1 HG00673.hp1 others(13): Show HG00609.hp1 HG00621.hp1 HG00673.hp1 HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02129.hp1 HG02135.hp1 NA18945.hp1 NA18959.hp1 NA18982.hp1 NA19062.hp1 NA19072.hp1 NA19076.hp1 NA19085.hp1 NA19086.hp1	intron_variant	MODIFIER	c.532+195T>C c.532+195T>C	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20769171
chrY:20769254	G G	C C	2	a0001c0001t0001g0014 a0001c0001t0001g0060 a0001c0001t0001g0014 a0001c0001t0001g0060	3	NA18940.hp1 NA18955.hp1 NA19056.hp1 NA18940.hp1 NA18955.hp1 NA19056.hp1	intron_variant	MODIFIER	c.532+278G>C c.532+278G>C	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20769254
chrY:20769545	A A	C C	3	a0001c0001t0001g0012 a0001c0001t0001g0025 a0001c0001t0001g0044 a0001c0001t0001g0012 a0001c0001t0001g0025 a0001c0001t0001g0044	4	NA18971.hp1 NA18974.hp1 NA18989.hp1 others(1): Show NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.532+569A>C c.532+569A>C	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20769545
chrY:20769616	T T	C C	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.532+640T>C c.532+640T>C	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20769616
chrY:20770633	TA TA	T T	3	a0001c0001t0001g0006 a0001c0001t0001g0045 a0001c0001t0001g0057 a0001c0001t0001g0006 a0001c0001t0001g0045 a0001c0001t0001g0057	9	HG00621.hp1 HG02056.hp1 NA18945.hp1 others(6): Show HG00621.hp1 HG02056.hp1 NA18945.hp1 NA18959.hp1 NA19062.hp1 NA19072.hp1 NA19076.hp1 NA19085.hp1 NA19086.hp1	intron_variant	MODIFIER	c.532+1666delA c.532+1666delA	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	20770633
chrY:20770794	C C	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	HG02083.hp1 HG02083.hp1	intron_variant	MODIFIER	c.532+1818C>A c.532+1818C>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20770794
chrY:20771194	G G	A A	5	a0001c0001t0001g0005 a0001c0001t0001g0061 a0001c0001t0001g0062 others(2): Show a0001c0001t0001g0005 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064	12	HG02055.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02717.hp1 HG02895.hp1 HG02965.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03471.hp1 NA18522.hp1	intron_variant	MODIFIER	c.532+2218G>A c.532+2218G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20771194
chrY:20772223	G G	A A	63	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 others(60): Show a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0013 a0001c0001t0001g0014 a0001c0001t0001g0015 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0023 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0029 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0033 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0045 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0064 a0001c0001t0001g0065 a0001c0002t0001g0009 a0001c0003t0001g0002 a0001c0003t0001g0007 a0002c0004t0001g0002	113	HG00140.hp1 HG00280.hp1 HG00609.hp1 others(110): Show HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00673.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01433.hp1 HG01928.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02486.hp1 HG02572.hp1 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02895.hp1 HG02965.hp1 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04199.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19072.hp1 NA19075.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20805.hp1 NA20905.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.532+3247G>A c.532+3247G>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20772223
chrY:20772401	GT GT	G G	1	a0001c0001t0001g0060 a0001c0001t0001g0060	1	NA18940.hp1 NA18940.hp1	intron_variant	MODIFIER	c.532+3437delT c.532+3437delT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	20772401
chrY:20774402	C C	CT CT	10	a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0031 others(7): Show a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0031 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0044 a0001c0001t0001g0051 a0001c0001t0001g0059 a0001c0001t0001g0064	12	HG02040.hp1 HG02145.hp1 NA18612.hp1 others(9): Show HG02040.hp1 HG02145.hp1 NA18612.hp1 NA18971.hp1 NA18974.hp1 NA18989.hp1 NA18995.hp1 NA19004.hp1 NA19063.hp1 NA19079.hp1 NA19082.hp1 NA19091.hp1	intron_variant	MODIFIER	c.533-5082dupT c.533-5082dupT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	20774402
chrY:20774402	C C	CTT CTT	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.533-5083_533-5082d others(4): Show c.533-5083_533-5082dupTT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	20774402
chrY:20774402	CT CT	C C	5	a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0046 others(2): Show a0001c0001t0001g0026 a0001c0001t0001g0028 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0052	5	HG01069.hp1 HG01256.hp1 HG01515.hp1 others(2): Show HG01069.hp1 HG01256.hp1 HG01515.hp1 HG02083.hp1 NA19055.hp1	intron_variant	MODIFIER	c.533-5082delT c.533-5082delT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	20774402
chrY:20774820	TC TC	T T	4	a0001c0001t0001g0016 a0001c0001t0001g0026 a0001c0001t0001g0046 others(1): Show a0001c0001t0001g0016 a0001c0001t0001g0026 a0001c0001t0001g0046 a0001c0001t0001g0050	4	HG02074.hp1 HG02083.hp1 NA19009.hp1 others(1): Show HG02074.hp1 HG02083.hp1 NA19009.hp1 NA19055.hp1	intron_variant	MODIFIER	c.533-4687delC c.533-4687delC	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	20774820
chrY:20775343	C C	T T	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.533-4166C>T c.533-4166C>T	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20775343
chrY:20775494	C C	A A	5	a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0025 others(2): Show a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0001g0025 a0001c0001t0001g0044 a0001c0001t0001g0059	7	NA18612.hp1 NA18971.hp1 NA18974.hp1 others(4): Show NA18612.hp1 NA18971.hp1 NA18974.hp1 NA18989.hp1 NA19006.hp1 NA19079.hp1 NA19091.hp1	intron_variant	MODIFIER	c.533-4015C>A c.533-4015C>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20775494
chrY:20775903	A A	AT AT	3	a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0044 a0001c0001t0001g0034 a0001c0001t0001g0035 a0001c0001t0001g0044	3	NA18967.hp1 NA18989.hp1 NA19058.hp1 NA18967.hp1 NA18989.hp1 NA19058.hp1	intron_variant	MODIFIER	c.533-3591dupT c.533-3591dupT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	20775903
chrY:20776646	A A	G G	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.533-2863A>G c.533-2863A>G	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20776646
chrY:20776926	A A	AT AT	2	a0001c0001t0001g0026 a0001c0001t0001g0049 a0001c0001t0001g0026 a0001c0001t0001g0049	2	HG02698.hp1 NA19055.hp1 HG02698.hp1 NA19055.hp1	intron_variant	MODIFIER	c.533-2569dupT c.533-2569dupT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	20776926
chrY:20778627	G G	T T	1	a0001c0001t0001g0053 a0001c0001t0001g0053	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.533-882G>T c.533-882G>T	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20778627
chrY:20778638	T T	C C	1	a0001c0001t0001g0055 a0001c0001t0001g0055	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.533-871T>C c.533-871T>C	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20778638
chrY:20778753	T T	C C	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG02074.hp1 HG02074.hp1	intron_variant	MODIFIER	c.533-756T>C c.533-756T>C	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20778753
chrY:20778800	G G	GT GT	2	a0001c0001t0001g0035 a0001c0001t0001g0054 a0001c0001t0001g0035 a0001c0001t0001g0054	2	HG02027.hp1 NA19058.hp1 HG02027.hp1 NA19058.hp1	intron_variant	MODIFIER	c.533-699dupT c.533-699dupT	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6	INFO_REALIGN_3_PRIME	chrY	20778800
chrY:20778959	T T	A A	1	a0001c0001t0001g0015 a0001c0001t0001g0015	2	HG01074.hp1 HG01109.hp1 HG01074.hp1 HG01109.hp1	intron_variant	MODIFIER	c.533-550T>A c.533-550T>A	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	5/6		chrY	20778959
chrY:20779981	C C	T T	2	a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0017 a0001c0001t0001g0018	2	HG02572.hp1 HG03098.hp1 HG02572.hp1 HG03098.hp1	intron_variant	MODIFIER	c.690+315C>T c.690+315C>T	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	6/6		chrY	20779981
chrY:20780531	C C	T T	2	a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0048 a0001c0001t0001g0049	2	HG02132.hp1 HG02698.hp1 HG02132.hp1 HG02698.hp1	intron_variant	MODIFIER	c.691-400C>T c.691-400C>T	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	6/6		chrY	20780531
chrY:20780864	C C	G G	1	a0001c0001t0001g0062 a0001c0001t0001g0062	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.691-67C>G c.691-67C>G	RPS4Y2	ENSG00000280969.2	transcript	ENST00000629237.2	protein_coding	6/6		chrY	20780864

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🧬 JoGo Online Haplotype Explorer RPS4Y2_chrY_20751108_20786032

JoGo Local Haplotype Explorer (on iGV) RPS4Y2_chrY_20751108_20786032

Translation Multiple Alignment View

ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 2)

CCoding Level Haplotype Info (Total: 4)

TTranscript Level Haplotype Info (Total: 1)

GGenebody Level Haplotype Info (Total: 65)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 4)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 4)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 69)

Haplotype Details by Sample (Haploid Level) (Total: 131)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 1)

CCoding Level Variants (Synonymous Mutations) (Total: 2)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 60)

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Annotation (Repeats)

Annotation (SNP Array)