JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RPSA2_chr19_23758004_23833868	0/0	a0009	295	2	2	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0010	295	1	0	1	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0011	295	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0012	295	1	1	0	0	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0013	295	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0014	295	1	0	0	0	0	1	copy fasta	RPSA2	chr19	23758004	23833868
RPSA2_chr19_23758004_23833868	0/0	a0015	295	1	0	0	1	0	0	copy fasta	RPSA2	chr19	23758004	23833868
RPSA_chr3_39401720_39417542	1/1	a0001	295	384	94	66	168	18	36	copy fasta	RPSA	chr3	39401720	39417542
RPTN_chr1_152148595_152164228	1/1	a0001	784	246	61	25	121	9	28	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0002	772	107	17	24	56	0	10	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0003	772	19	1	8	1	4	5	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0004	784	16	1	11	0	2	2	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0005	784	6	0	0	6	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0006	772	5	0	4	0	1	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0007	784	4	1	2	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0008	784	2	2	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0009	784	2	0	0	0	2	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0010	772	2	0	0	2	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0011	772	2	0	2	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0012	784	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0013	784	1	0	0	0	0	1	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0014	784	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0015	784	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0016	784	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0017	784	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0018	748	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0019	772	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0020	758	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0021	784	1	1	0	0	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTN_chr1_152148595_152164228	0/0	a0022	784	1	0	0	1	0	0	copy fasta	RPTN	chr1	152148595	152164228
RPTOR_chr17_80539838_80971368	1/1	a0001	1335	191	69	42	41	14	23	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	a0002	1335	2	2	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	a0003	1212	1	0	0	1	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	a0004	1335	1	0	0	0	0	1	copy fasta	RPTOR	chr17	80539838	80971368
RPTOR_chr17_80539838_80971368	0/0	a0005	1335	1	1	0	0	0	0	copy fasta	RPTOR	chr17	80539838	80971368
RPUSD1_chr16_779974_793381	1/1	a0001	312	374	73	75	164	16	44	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	a0002	312	13	7	3	3	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	a0003	312	11	9	2	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	a0004	312	5	4	1	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	a0005	312	4	0	0	4	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	a0006	312	1	0	0	1	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	a0007	312	1	1	0	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD1_chr16_779974_793381	0/0	a0008	312	1	0	1	0	0	0	copy fasta	RPUSD1	chr16	779974	793381
RPUSD2_chr15_40564299_40579949	1/1	a0001	545	389	88	66	177	10	46	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	a0002	545	1	1	0	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	a0003	545	1	1	0	0	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD2_chr15_40564299_40579949	0/0	a0004	545	1	0	0	1	0	0	copy fasta	RPUSD2	chr15	40564299	40579949
RPUSD3_chr3_9832849_9849008	1/1	a0001	343	433	85	80	205	18	43	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	a0002	343	6	6	0	0	0	0	copy fasta	RPUSD3	chr3	9832849	9849008
RPUSD3_chr3_9832849_9849008	0/0	a0003	343	4	0	0	4	0	0	copy fasta	RPUSD3	chr3	9832849	9849008