JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RSAD1_chr17_50473860_50490974	0/0	a0012	442	1	0	0	1	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0013	442	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD1_chr17_50473860_50490974	0/0	a0014	442	1	1	0	0	0	0	copy fasta	RSAD1	chr17	50473860	50490974
RSAD2_chr2_6872777_6903239	1/1	a0001	361	336	92	62	118	16	46	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	a0002	361	2	2	0	0	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	a0003	361	1	0	0	1	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSAD2_chr2_6872777_6903239	0/0	a0004	361	1	0	0	1	0	0	copy fasta	RSAD2	chr2	6872777	6903239
RSBN1L_chr7_77691459_77788022	1/1	a0001	846	321	79	63	114	18	45	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	a0002	846	9	8	1	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	a0003	846	1	1	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	a0004	846	1	1	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	a0005	846	1	0	0	1	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	a0006	846	1	1	0	0	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	a0007	846	1	0	0	1	0	0	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1L_chr7_77691459_77788022	0/0	a0008	846	1	0	0	0	0	1	copy fasta	RSBN1L	chr7	77691459	77788022
RSBN1_chr1_113756832_113817476	1/1	a0001	802	339	72	66	149	14	36	copy fasta	RSBN1	chr1	113756832	113817476
RSBN1_chr1_113756832_113817476	0/0	a0002	802	1	0	0	1	0	0	copy fasta	RSBN1	chr1	113756832	113817476
RSC1A1_chr1_15654713_15667033	1/1	a0001	617	254	50	50	115	11	26	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0002	617	91	40	21	15	3	12	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0003	617	3	0	0	3	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0004	617	3	0	1	0	1	1	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0005	617	2	2	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0006	617	2	2	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0007	19	1	1	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0008	617	1	1	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0009	617	1	0	0	0	0	1	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0010	617	1	0	0	0	1	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0011	617	1	0	0	1	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0012	617	1	1	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSC1A1_chr1_15654713_15667033	0/0	a0013	617	1	1	0	0	0	0	copy fasta	RSC1A1	chr1	15654713	15667033
RSF1_chr11_77655009_77825722	1/1	a0001	1441	292	75	43	143	11	18	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0002	1441	40	3	13	8	4	12	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0003	1441	5	0	0	5	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0004	1441	4	4	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0005	1441	2	2	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0006	1441	2	0	0	2	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0007	1441	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0008	1441	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0009	1441	1	1	0	0	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0010	1441	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0011	1441	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0012	1441	1	0	0	1	0	0	copy fasta	RSF1	chr11	77655009	77825722
RSF1_chr11_77655009_77825722	0/0	a0013	1441	1	0	0	0	1	0	copy fasta	RSF1	chr11	77655009	77825722
RSKR_chr17_28602963_28619185	1/1	a0001	410	357	84	70	151	5	45	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	a0002	410	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	a0003	410	1	0	0	1	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	a0004	410	1	0	0	0	1	0	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	a0005	410	1	0	0	0	0	1	copy fasta	RSKR	chr17	28602963	28619185
RSKR_chr17_28602963_28619185	0/0	a0006	410	1	1	0	0	0	0	copy fasta	RSKR	chr17	28602963	28619185
RSL1D1_chr16_11828850_11856542	1/1	a0001	490	389	88	78	161	15	45	copy fasta	RSL1D1	chr16	11828850	11856542