JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RTL1_chr14_100874753_100908722	0/0	a0005	1358	15	14	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0006	1358	8	0	5	1	1	1	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0007	1358	7	0	6	0	1	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0008	1358	3	0	3	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0009	1359	2	0	1	0	0	1	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0010	1359	2	0	0	0	0	2	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0011	1358	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0012	1359	1	0	0	0	0	1	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0013	1358	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0014	1358	1	1	0	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0015	1358	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0016	1358	1	0	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0017	1358	1	0	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0018	1358	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0019	1358	1	0	1	0	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL1_chr14_100874753_100908722	0/0	a0020	1358	1	0	0	1	0	0	copy fasta	RTL1	chr14	100874753	100908722
RTL3_chrX_78651068_78664328	1/1	a0001	475	291	55	58	144	9	23	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	a0002	475	17	8	2	1	4	2	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	a0003	475	5	3	2	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	a0004	475	2	0	0	2	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	a0005	475	2	1	1	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	a0006	52	1	0	1	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	a0007	179	1	0	1	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	a0008	475	1	1	0	0	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	a0009	475	1	0	0	1	0	0	copy fasta	RTL3	chrX	78651068	78664328
RTL3_chrX_78651068_78664328	0/0	a0010	475	1	0	0	0	0	1	copy fasta	RTL3	chrX	78651068	78664328
RTL4_chrX_112078016_112462514	0/0	a0001	310	61	32	3	21	2	3	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	1/1	a0002	310	59	5	11	31	0	10	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	a0003	310	12	2	5	0	3	2	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	a0004	310	1	0	0	0	0	1	copy fasta	RTL4	chrX	112078016	112462514
RTL4_chrX_112078016_112462514	0/0	a0005	310	1	1	0	0	0	0	copy fasta	RTL4	chrX	112078016	112462514
RTL5_chrX_72122110_72136915	0/0	a0000	0	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	1/1	a0001	569	220	68	38	76	7	29	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	a0002	569	79	1	10	65	0	3	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	a0003	569	5	4	1	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	a0004	151	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	a0005	569	1	1	0	0	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL5_chrX_72122110_72136915	0/0	a0006	190	1	0	0	1	0	0	copy fasta	RTL5	chrX	72122110	72136915
RTL6_chr22_44487583_44503233	1/1	a0001	239	402	94	64	182	16	44	copy fasta	RTL6	chr22	44487583	44503233
RTL8A_chrX_135045932_135057135	0/0	a0001	113	228	67	42	89	6	24	copy fasta	RTL8A	chrX	135045932	135057135
RTL8A_chrX_135045932_135057135	1/1	a0002	113	90	6	16	55	1	10	copy fasta	RTL8A	chrX	135045932	135057135
RTL8B_chrX_135015513_135027542	1/1	a0001	113	293	74	51	125	11	30	copy fasta	RTL8B	chrX	135015513	135027542
RTL8B_chrX_135015513_135027542	0/0	a0002	92	2	0	0	2	0	0	copy fasta	RTL8B	chrX	135015513	135027542
RTL8C_chrX_135027355_135038546	1/1	a0001	113	297	74	51	135	7	28	copy fasta	RTL8C	chrX	135027355	135038546
RTL8C_chrX_135027355_135038546	0/0	a0002	33	1	0	0	1	0	0	copy fasta	RTL8C	chrX	135027355	135038546
RTL9_chrX_110353848_110461334	1/1	a0001	1388	148	38	19	68	7	14	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	a0002	1388	6	6	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	a0003	1388	3	3	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	a0004	1388	2	0	0	0	0	2	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	a0005	1388	1	1	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334