Joint Open Genome and Omics Platform (JoGo)

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geneid	57529
ensemblid	ENSG00000243978.9
hgncid	29245
symbol	RTL9
name	retrotransposon Gag like 9
refseq_nuc	NM_001385449.1
refseq_prot	NP_001372378.1
ensembl_nuc	ENST00000520821.6
ensembl_prot	ENSP00000430395.2
mane_status	MANE Select
chr	chrX
start	110358848
end	110456334
strand	+
ver	v1.2
region	chrX:110358848-110456334
region5000	chrX:110353848-110461334
regionname0	RTL9_chrX_110358848_110456334
regionname5000	RTL9_chrX_110353848_110461334

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	1388	148	38	19	68	7	14	53	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0002	0/0	1388	6	6	0	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0003	0/0	1388	3	3	0	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0004	0/0	1388	2	0	0	0	0	2	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0005	0/0	1388	1	1	0	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0006	0/0	1388	1	0	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0007	0/0	1388	1	1	0	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0008	0/0	1388	1	0	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0009	0/0	1388	1	0	0	1	0	0	1	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0010	0/0	1388	1	1	0	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	4167	101	4	14	67	3	11	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0002	0/0	4167	43	32	4	1	4	2	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0003	0/0	4167	6	6	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0004	0/0	4167	3	2	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0005	0/0	4167	3	3	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0006	0/0	4167	2	0	0	0	0	2	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0007	0/0	4167	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0008	0/0	4167	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0009	0/0	4167	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0010	0/0	4167	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0011	0/0	4167	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0012	0/0	4167	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
c0013	0/0	4167	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	1250	100	1	15	66	3	13	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
t0002	0/0	1250	50	38	5	1	4	2	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
t0003	0/0	1250	4	3	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
t0004	0/0	1250	3	3	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
t0005	0/0	1250	2	2	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
t0006	0/0	1250	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
t0007	0/0	1250	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
t0008	0/0	1250	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
t0009	0/0	1250	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
t0010	0/0	1250	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
t0011	0/0	1250	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	2	0	0	1	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0002	0/0	2	0	1	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0003	0/0	2	0	1	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0004	0/0	2	2	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0005	0/0	2	0	0	0	1	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0006	0/0	2	2	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0007	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0008	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0009	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0010	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0011	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0012	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0013	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0014	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0015	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0016	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0017	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0018	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0019	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0020	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0021	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0022	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0023	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0024	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0025	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0026	0/0	1	0	0	0	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0027	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0028	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0029	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0030	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0031	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0032	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0033	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0034	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0035	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0036	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0037	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0038	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0039	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0040	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0041	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0042	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0043	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0044	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0045	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0046	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0047	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0048	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0049	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0050	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0051	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0052	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0053	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0054	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0055	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0056	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0057	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0058	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0059	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0060	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0061	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0062	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0063	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0064	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0065	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0066	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0067	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0068	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0069	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0070	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0071	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0072	0/0	1	0	0	0	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0073	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0074	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0075	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0076	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0077	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0078	0/0	1	0	0	0	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0079	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0080	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0081	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0082	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0083	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0084	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0085	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0086	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0087	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0088	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0089	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0090	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0091	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0092	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0093	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0094	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0095	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0096	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0097	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0098	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0099	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0100	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0101	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0102	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0103	1/0	1	0	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0104	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0105	0/1	1	0	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0106	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0107	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0108	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0109	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0110	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0111	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0112	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0113	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0114	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0115	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0116	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0117	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0118	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0119	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0120	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0121	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0122	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0123	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0124	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0125	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0126	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0127	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0128	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0129	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0130	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0131	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0132	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0133	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0134	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0135	0/0	1	0	0	0	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0136	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0137	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0138	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0139	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0140	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0141	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0142	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0143	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0144	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0145	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0146	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0147	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0148	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0149	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0150	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0151	0/0	1	0	0	0	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0152	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0153	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0154	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0155	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0156	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0157	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0158	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
g0159	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	4167	101	4	14	67	3	11	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0002	0/0	4167	43	32	4	1	4	2	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0004	0/0	4167	3	2	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0013	0/0	4167	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0002c0003	0/0	4167	6	6	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0003c0005	0/0	4167	3	3	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0004c0006	0/0	4167	2	0	0	0	0	2	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0005c0007	0/0	4167	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0006c0012	0/0	4167	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0007c0008	0/0	4167	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0008c0010	0/0	4167	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0009c0011	0/0	4167	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0010c0009	0/0	4167	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	5416	94	1	13	65	3	10	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0001t0003	0/0	5416	4	3	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0001t0007	0/0	5416	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0001t0008	0/0	5416	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0001t0011	0/0	5416	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0002t0002	0/0	5416	36	25	4	1	4	2	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0002t0004	0/0	5416	3	3	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0002t0005	0/0	5416	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0002t0006	0/0	5416	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0002t0009	0/0	5416	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0002t0010	0/0	5416	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0004t0002	0/0	5416	3	2	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0001c0013t0001	0/0	5416	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0002c0003t0002	0/0	5416	6	6	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0003c0005t0002	0/0	5416	3	3	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0004c0006t0001	0/0	5416	2	0	0	0	0	2	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0005c0007t0005	0/0	5416	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0006c0012t0001	0/0	5416	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0007c0008t0002	0/0	5416	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0008c0010t0001	0/0	5416	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0009c0011t0001	0/0	5416	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334
a0010c0009t0002	0/0	5416	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	copy fasta	chrX	110353848	110461334

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	2	0	0	1	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0002	0/0	2	0	1	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0003	0/0	2	0	1	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0005	0/0	2	0	0	0	1	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0013	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0016	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0017	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0018	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0019	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0020	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0021	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0022	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0024	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0025	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0028	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0030	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0031	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0032	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0035	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0036	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0037	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0038	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0039	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0040	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0041	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0042	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0043	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0044	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0046	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0047	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0048	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0049	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0050	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0051	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0052	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0054	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0055	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0056	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0057	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0059	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0060	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0061	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0062	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0063	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0065	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0066	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0067	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0069	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0070	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0071	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0074	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0075	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0076	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0077	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0080	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0081	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0082	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0087	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0088	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0089	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0090	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0091	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0093	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0094	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0095	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0096	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0098	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0099	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0100	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0101	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0102	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0103	1/0	1	0	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0105	0/1	1	0	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0107	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0108	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0109	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0110	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0111	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0112	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0113	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0115	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0116	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0117	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0118	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0119	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0126	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0127	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0134	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0135	0/0	1	0	0	0	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0001g0146	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0003g0083	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0003g0085	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0003g0121	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0003g0159	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0007g0104	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0008g0073	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0001t0011g0033	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0004	0/0	2	2	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0006	0/0	2	2	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0012	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0023	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0026	0/0	1	0	0	0	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0029	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0053	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0058	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0064	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0072	0/0	1	0	0	0	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0078	0/0	1	0	0	0	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0086	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0114	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0122	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0123	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0124	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0128	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0129	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0130	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0136	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0137	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0139	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0141	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0142	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0143	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0144	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0145	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0148	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0149	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0151	0/0	1	0	0	0	1	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0152	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0153	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0155	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0002g0156	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0004g0034	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0004g0120	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0004g0140	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0005g0133	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0006g0132	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0009g0008	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0002t0010g0147	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0004t0002g0009	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0004t0002g0010	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0004t0002g0131	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0001c0013t0001g0106	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0002c0003t0002g0014	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0002c0003t0002g0084	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0002c0003t0002g0125	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0002c0003t0002g0154	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0002c0003t0002g0157	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0002c0003t0002g0158	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0003c0005t0002g0015	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0003c0005t0002g0097	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0003c0005t0002g0138	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0004c0006t0001g0045	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0004c0006t0001g0079	0/0	1	0	0	0	0	1	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0005c0007t0005g0007	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0006c0012t0001g0027	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0007c0008t0002g0150	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0008c0010t0001g0092	0/0	1	0	1	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0009c0011t0001g0068	0/0	1	0	0	1	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
a0010c0009t0002g0011	0/0	1	1	0	0	0	0	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0002	t0002	g0151	EUR	GBR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG00099	hp2	a0001	c0001	t0001	g0001	EUR	GBR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG00140	hp1	a0001	c0002	t0002	g0026	EUR	GBR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG00280	hp1	a0001	c0002	t0002	g0078	EUR	FIN	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG00609	hp1	a0001	c0001	t0001	g0066	EAS	CHS	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG00621	hp1	a0001	c0001	t0001	g0134	EAS	CHS	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG00642	hp1	a0001	c0001	t0001	g0065	AMR	PUR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG00673	hp1	a0001	c0001	t0001	g0089	EAS	CHS	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG00738	hp1	a0001	c0001	t0001	g0094	AMR	PUR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01069	hp1	a0001	c0001	t0001	g0099	AMR	PUR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01074	hp1	a0001	c0001	t0001	g0069	AMR	PUR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01099	hp1	a0001	c0001	t0001	g0030	AMR	PUR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01106	hp1	a0001	c0002	t0002	g0148	AMR	PUR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01109	hp1	a0001	c0001	t0003	g0121	AMR	PUR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01167	hp1	a0001	c0002	t0002	g0123	AMR	PUR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01192	hp1	a0001	c0001	t0001	g0003	AMR	PUR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01243	hp1	a0001	c0004	t0002	g0010	AMR	PUR	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01255	hp1	a0001	c0001	t0001	g0018	AMR	CLM	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01256	hp1	a0001	c0001	t0001	g0127	AMR	CLM	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01258	hp1	a0001	c0002	t0002	g0058	AMR	CLM	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01261	hp1	a0001	c0001	t0001	g0077	AMR	CLM	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01358	hp1	a0008	c0010	t0001	g0092	AMR	CLM	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01433	hp1	a0001	c0002	t0002	g0064	AMR	CLM	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01515	hp1	a0001	c0002	t0002	g0072	EUR	IBS	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01884	hp1	a0001	c0002	t0009	g0008	AFR	ACB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01884	hp2	a0001	c0002	t0002	g0006	AFR	ACB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01928	hp1	a0001	c0001	t0001	g0040	AMR	PEL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01934	hp1	a0001	c0001	t0001	g0047	AMR	PEL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01943	hp1	a0001	c0001	t0001	g0002	AMR	PEL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG01952	hp1	a0006	c0012	t0001	g0027	AMR	PEL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02015	hp1	a0001	c0001	t0001	g0076	EAS	KHV	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02027	hp1	a0001	c0001	t0001	g0042	EAS	KHV	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02040	hp1	a0001	c0001	t0001	g0043	EAS	KHV	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02055	hp1	a0005	c0007	t0005	g0007	AFR	ACB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02056	hp1	a0001	c0001	t0001	g0115	EAS	KHV	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02071	hp1	a0001	c0001	t0001	g0107	EAS	KHV	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02074	hp1	a0001	c0001	t0001	g0020	EAS	KHV	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02083	hp1	a0001	c0001	t0001	g0096	EAS	KHV	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02129	hp1	a0001	c0001	t0001	g0095	EAS	KHV	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02132	hp1	a0001	c0001	t0001	g0025	EAS	KHV	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02135	hp1	a0001	c0001	t0001	g0032	EAS	KHV	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02145	hp1	a0001	c0002	t0002	g0156	AFR	ACB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02258	hp1	a0001	c0002	t0002	g0153	AFR	ACB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02300	hp1	a0001	c0001	t0001	g0024	AMR	PEL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02451	hp1	a0001	c0002	t0002	g0136	AFR	ACB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02451	hp2	a0001	c0002	t0002	g0130	AFR	ACB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02572	hp1	a0001	c0001	t0003	g0085	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02602	hp1	a0004	c0006	t0001	g0045	SAS	PJL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02622	hp1	a0001	c0002	t0002	g0142	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02622	hp2	a0002	c0003	t0002	g0158	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02630	hp1	a0001	c0002	t0006	g0132	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02630	hp2	a0003	c0005	t0002	g0138	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02647	hp1	a0010	c0009	t0002	g0011	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02698	hp1	a0001	c0001	t0001	g0071	SAS	PJL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02717	hp1	a0001	c0002	t0002	g0124	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02735	hp1	a0001	c0001	t0001	g0098	SAS	PJL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02738	hp1	a0001	c0001	t0001	g0146	SAS	PJL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02809	hp1	a0001	c0002	t0002	g0144	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02809	hp2	a0002	c0003	t0002	g0125	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02818	hp1	a0001	c0002	t0002	g0129	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02818	hp2	a0001	c0004	t0002	g0009	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02886	hp1	a0001	c0002	t0004	g0034	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02886	hp2	a0003	c0005	t0002	g0097	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02895	hp1	a0001	c0002	t0002	g0004	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02897	hp1	a0002	c0003	t0002	g0157	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02897	hp2	a0001	c0002	t0002	g0004	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02965	hp1	a0002	c0003	t0002	g0084	AFR	ESN	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03017	hp1	a0001	c0001	t0001	g0017	SAS	PJL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03041	hp1	a0002	c0003	t0002	g0154	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03041	hp2	a0001	c0002	t0002	g0128	AFR	GWD	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03098	hp1	a0001	c0002	t0005	g0133	AFR	MSL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03130	hp1	a0001	c0002	t0002	g0143	AFR	ESN	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03139	hp1	a0001	c0002	t0002	g0006	AFR	ESN	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03195	hp1	a0003	c0005	t0002	g0015	AFR	ESN	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03195	hp2	a0001	c0001	t0003	g0083	AFR	ESN	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03209	hp1	a0007	c0008	t0002	g0150	AFR	MSL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03225	hp1	a0001	c0002	t0002	g0155	AFR	MSL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03486	hp1	a0001	c0002	t0002	g0122	AFR	MSL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03486	hp2	a0001	c0002	t0002	g0152	AFR	MSL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03490	hp1	a0001	c0001	t0001	g0087	SAS	PJL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03492	hp1	a0001	c0001	t0007	g0104	SAS	PJL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03579	hp1	a0001	c0002	t0004	g0140	AFR	MSL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03654	hp1	a0001	c0001	t0001	g0126	SAS	PJL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03688	hp1	a0001	c0002	t0002	g0053	SAS	STU	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03710	hp1	a0001	c0002	t0002	g0023	SAS	PJL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03942	hp1	a0001	c0001	t0001	g0082	SAS	BEB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG04115	hp1	a0001	c0001	t0001	g0016	SAS	STU	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG04199	hp1	a0004	c0006	t0001	g0079	SAS	STU	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG04204	hp1	a0001	c0013	t0001	g0106	SAS	STU	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG04228	hp1	a0001	c0001	t0001	g0101	SAS	STU	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18522	hp1	a0001	c0001	t0003	g0159	AFR	YRI	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18612	hp1	a0001	c0001	t0001	g0002	EAS	CHB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18747	hp1	a0001	c0001	t0001	g0091	EAS	CHB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18906	hp1	a0001	c0002	t0002	g0137	AFR	YRI	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18906	hp2	a0001	c0002	t0002	g0139	AFR	YRI	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18940	hp1	a0001	c0001	t0001	g0070	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18943	hp1	a0001	c0001	t0001	g0003	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18944	hp1	a0001	c0001	t0001	g0050	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18945	hp1	a0001	c0001	t0001	g0019	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18948	hp1	a0001	c0001	t0001	g0036	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18952	hp1	a0001	c0001	t0001	g0049	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18953	hp1	a0001	c0001	t0001	g0108	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18959	hp1	a0001	c0001	t0001	g0056	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18960	hp1	a0001	c0001	t0001	g0054	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18965	hp1	a0001	c0001	t0001	g0088	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18966	hp1	a0001	c0001	t0001	g0037	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18967	hp1	a0001	c0001	t0001	g0051	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18970	hp1	a0001	c0001	t0001	g0031	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18971	hp1	a0001	c0001	t0001	g0059	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18974	hp1	a0001	c0001	t0001	g0081	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18977	hp1	a0001	c0001	t0001	g0112	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18982	hp1	a0001	c0001	t0001	g0118	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18983	hp1	a0001	c0001	t0001	g0044	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18984	hp1	a0001	c0001	t0001	g0080	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18985	hp1	a0001	c0001	t0001	g0046	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18986	hp1	a0001	c0001	t0001	g0113	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18988	hp1	a0001	c0001	t0001	g0060	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18989	hp1	a0001	c0001	t0008	g0073	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18990	hp1	a0001	c0001	t0001	g0021	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18994	hp1	a0001	c0001	t0001	g0062	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18995	hp1	a0001	c0001	t0001	g0111	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19000	hp1	a0001	c0001	t0001	g0022	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19004	hp1	a0001	c0001	t0001	g0038	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19005	hp1	a0001	c0001	t0001	g0039	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19006	hp1	a0001	c0001	t0001	g0013	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19007	hp1	a0001	c0001	t0001	g0057	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19009	hp1	a0001	c0001	t0001	g0093	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19012	hp1	a0001	c0001	t0001	g0028	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19030	hp1	a0001	c0002	t0002	g0145	AFR	LWK	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19030	hp2	a0002	c0003	t0002	g0014	AFR	LWK	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19043	hp1	a0001	c0002	t0002	g0149	AFR	LWK	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19055	hp1	a0001	c0001	t0001	g0116	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19056	hp1	a0001	c0001	t0001	g0035	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19058	hp1	a0001	c0001	t0001	g0074	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19060	hp1	a0001	c0001	t0001	g0052	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19062	hp1	a0001	c0001	t0001	g0119	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19063	hp1	a0001	c0002	t0002	g0086	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19066	hp1	a0001	c0001	t0001	g0109	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19067	hp1	a0001	c0001	t0001	g0110	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19068	hp1	a0001	c0001	t0001	g0067	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19070	hp1	a0001	c0001	t0001	g0055	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19076	hp1	a0001	c0001	t0001	g0075	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19079	hp1	a0001	c0001	t0001	g0100	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19082	hp1	a0001	c0001	t0001	g0041	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19083	hp1	a0001	c0001	t0011	g0033	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19085	hp1	a0001	c0001	t0001	g0061	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19086	hp1	a0001	c0001	t0001	g0117	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19088	hp1	a0001	c0001	t0001	g0063	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19089	hp1	a0001	c0001	t0001	g0090	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA19091	hp1	a0001	c0001	t0001	g0048	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA20752	hp1	a0001	c0001	t0001	g0005	EUR	TSI	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA20805	hp1	a0001	c0001	t0001	g0135	EUR	TSI	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA20905	hp1	a0001	c0001	t0001	g0005	SAS	GIH	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG02486	hp1	a0001	c0002	t0002	g0029	AFR	ACB	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG03471	hp1	a0001	c0002	t0004	g0120	AFR	MSL	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG06807	hp1	a0001	c0002	t0002	g0114	AFR	USA	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
HG06807	hp2	a0001	c0002	t0002	g0012	AFR	USA	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA18955	hp1	a0009	c0011	t0001	g0068	EAS	JPT	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA20300	hp1	a0001	c0001	t0001	g0102	AFR	USA	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA20300	hp2	a0001	c0004	t0002	g0131	AFR	USA	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA21309	hp1	a0001	c0002	t0002	g0141	AFR	LWK	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
NA21309	hp2	a0001	c0002	t0010	g0147	AFR	LWK	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0105	REF	REF	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0103	REF	REF	RTL9_chrX_110353848_110461334	RTL9	chrX	110353848	110461334

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrX:110451405	C C	T T	1	a0004 a0004	2	HG02602.hp1 HG04199.hp1 HG02602.hp1 HG04199.hp1	missense_variant	MODERATE	c.788C>T c.788C>T	p.Thr263Met p.Thr263Met	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	1024/5416	788/4167	263/1388		chrX	110451405
chrX:110452127	G G	A A	1	a0003 a0003	3	HG02630.hp2 HG02886.hp2 HG03195.hp1 HG02630.hp2 HG02886.hp2 HG03195.hp1	missense_variant	MODERATE	c.1510G>A c.1510G>A	p.Ala504Thr p.Ala504Thr	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	1746/5416	1510/4167	504/1388		chrX	110452127
chrX:110452190	A A	C C	1	a0003 a0003	3	HG02630.hp2 HG02886.hp2 HG03195.hp1 HG02630.hp2 HG02886.hp2 HG03195.hp1	missense_variant	MODERATE	c.1573A>C c.1573A>C	p.Met525Leu p.Met525Leu	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	1809/5416	1573/4167	525/1388		chrX	110452190
chrX:110452386	C C	T T	1	a0005 a0005	1	HG02055.hp1 HG02055.hp1	missense_variant	MODERATE	c.1769C>T c.1769C>T	p.Thr590Met p.Thr590Met	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	2005/5416	1769/4167	590/1388		chrX	110452386
chrX:110452637	A A	G G	1	a0006 a0006	1	HG01952.hp1 HG01952.hp1	missense_variant	MODERATE	c.2020A>G c.2020A>G	p.Thr674Ala p.Thr674Ala	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	2256/5416	2020/4167	674/1388		chrX	110452637
chrX:110452946	C C	T T	1	a0003 a0003	3	HG02630.hp2 HG02886.hp2 HG03195.hp1 HG02630.hp2 HG02886.hp2 HG03195.hp1	missense_variant	MODERATE	c.2329C>T c.2329C>T	p.Pro777Ser p.Pro777Ser	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	2565/5416	2329/4167	777/1388		chrX	110452946
chrX:110453555	A A	C C	1	a0002 a0002	6	HG02622.hp2 HG02809.hp2 HG02897.hp1 others(3): Show HG02622.hp2 HG02809.hp2 HG02897.hp1 HG02965.hp1 HG03041.hp1 NA19030.hp2	missense_variant	MODERATE	c.2938A>C c.2938A>C	p.Met980Leu p.Met980Leu	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	3174/5416	2938/4167	980/1388		chrX	110453555
chrX:110453646	T T	C C	1	a0007 a0007	1	HG03209.hp1 HG03209.hp1	missense_variant	MODERATE	c.3029T>C c.3029T>C	p.Val1010Ala p.Val1010Ala	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	3265/5416	3029/4167	1010/1388		chrX	110453646
chrX:110453658	T T	G G	1	a0010 a0010	1	HG02647.hp1 HG02647.hp1	missense_variant	MODERATE	c.3041T>G c.3041T>G	p.Met1014Arg p.Met1014Arg	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	3277/5416	3041/4167	1014/1388		chrX	110453658
chrX:110454215	T T	C C	1	a0008 a0008	1	HG01358.hp1 HG01358.hp1	missense_variant	MODERATE	c.3598T>C c.3598T>C	p.Trp1200Arg p.Trp1200Arg	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	3834/5416	3598/4167	1200/1388		chrX	110454215
chrX:110454221	A A	C C	1	a0009 a0009	1	NA18955.hp1 NA18955.hp1	missense_variant	MODERATE	c.3604A>C c.3604A>C	p.Ile1202Leu p.Ile1202Leu	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	3840/5416	3604/4167	1202/1388		chrX	110454221
chrX:110456326	GA GA	G G	1	a0001 a0001	1	NA18989.hp1 NA18989.hp1	splice_region_variant	LOW	c.1011delA c.1011delA		RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4				INFO_REALIGN_3_PRIME	chrX	110456326

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:110451457	T T	A A	8	a0001c0002 a0001c0004 a0002c0003 others(5): Show a0001c0002 a0001c0004 a0002c0003 a0003c0005 a0004c0006 a0005c0007 a0007c0008 a0010c0009	60	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(57): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01167.hp1 HG01243.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02602.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG04199.hp1 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19063.hp1 NA20300.hp2 NA21309.hp1 NA21309.hp2	synonymous_variant	LOW	c.840T>A c.840T>A	p.Gly280Gly p.Gly280Gly	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	1076/5416	840/4167	280/1388	chrX	110451457
chrX:110451673	G G	A A	3	a0001c0004 a0002c0003 a0005c0007 a0001c0004 a0002c0003 a0005c0007	10	HG01243.hp1 HG02055.hp1 HG02622.hp2 others(7): Show HG01243.hp1 HG02055.hp1 HG02622.hp2 HG02809.hp2 HG02818.hp2 HG02897.hp1 HG02965.hp1 HG03041.hp1 NA19030.hp2 NA20300.hp2	synonymous_variant	LOW	c.1056G>A c.1056G>A	p.Thr352Thr p.Thr352Thr	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	1292/5416	1056/4167	352/1388	chrX	110451673
chrX:110451820	A A	G G	1	a0001c0013 a0001c0013	1	HG04204.hp1 HG04204.hp1	synonymous_variant	LOW	c.1203A>G c.1203A>G	p.Pro401Pro p.Pro401Pro	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	1439/5416	1203/4167	401/1388	chrX	110451820
chrX:110451838	T T	C C	2	a0001c0004 a0003c0005 a0001c0004 a0003c0005	6	HG01243.hp1 HG02630.hp2 HG02818.hp2 others(3): Show HG01243.hp1 HG02630.hp2 HG02818.hp2 HG02886.hp2 HG03195.hp1 NA20300.hp2	synonymous_variant	LOW	c.1221T>C c.1221T>C	p.Asp407Asp p.Asp407Asp	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	1457/5416	1221/4167	407/1388	chrX	110451838
chrX:110453473	A A	G G	2	a0001c0004 a0003c0005 a0001c0004 a0003c0005	6	HG01243.hp1 HG02630.hp2 HG02818.hp2 others(3): Show HG01243.hp1 HG02630.hp2 HG02818.hp2 HG02886.hp2 HG03195.hp1 NA20300.hp2	synonymous_variant	LOW	c.2856A>G c.2856A>G	p.Pro952Pro p.Pro952Pro	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/4	3092/5416	2856/4167	952/1388	chrX	110453473

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	status	chr	pos
chrX:110358904	G G	A A	3	a0001c0002t0005 a0001c0002t0006 a0005c0007t0005 a0001c0002t0005 a0001c0002t0006 a0005c0007t0005	3	HG02055.hp1 HG02630.hp1 HG03098.hp1 HG02055.hp1 HG02630.hp1 HG03098.hp1	5_prime_UTR_variant	MODIFIER	c.-180G>A c.-180G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/4	91714		chrX	110358904
chrX:110455356	C C	T T	1	a0001c0001t0003 a0001c0001t0003	4	HG01109.hp1 HG02572.hp1 HG03195.hp2 others(1): Show HG01109.hp1 HG02572.hp1 HG03195.hp2 NA18522.hp1	3_prime_UTR_variant	MODIFIER	c.35C>T c.35C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4	35		chrX	110455356
chrX:110455515	C C	T T	1	a0001c0001t0011 a0001c0001t0011	1	NA19083.hp1 NA19083.hp1	3_prime_UTR_variant	MODIFIER	c.194C>T c.194C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4	194		chrX	110455515
chrX:110455531	G G	T T	12	a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 others(9): Show a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0002t0006 a0001c0002t0009 a0001c0002t0010 a0001c0004t0002 a0002c0003t0002 a0003c0005t0002 a0005c0007t0005 a0007c0008t0002 a0010c0009t0002	58	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(55): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01167.hp1 HG01243.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19063.hp1 NA20300.hp2 NA21309.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.210G>T c.210G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4	210		chrX	110455531
chrX:110455558	G G	A A	1	a0001c0001t0007 a0001c0001t0007	1	HG03492.hp1 HG03492.hp1	3_prime_UTR_variant	MODIFIER	c.237G>A c.237G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4	237		chrX	110455558
chrX:110455585	C C	T T	1	a0001c0002t0010 a0001c0002t0010	1	NA21309.hp2 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.264C>T c.264C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4	264		chrX	110455585
chrX:110455613	G G	GTT GTT	1	a0001c0001t0008 a0001c0001t0008	1	NA18989.hp1 NA18989.hp1	3_prime_UTR_variant	MODIFIER	c.293_294insTT c.293_294insTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4	294	INFO_REALIGN_3_PRIME	chrX	110455613
chrX:110456048	T T	G G	2	a0001c0002t0004 a0001c0002t0006 a0001c0002t0004 a0001c0002t0006	4	HG02630.hp1 HG02886.hp1 HG03471.hp1 others(1): Show HG02630.hp1 HG02886.hp1 HG03471.hp1 HG03579.hp1	3_prime_UTR_variant	MODIFIER	c.727T>G c.727T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4	727		chrX	110456048
chrX:110456050	G G	A A	1	a0001c0002t0009 a0001c0002t0009	1	HG01884.hp1 HG01884.hp1	3_prime_UTR_variant	MODIFIER	c.729G>A c.729G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4	729		chrX	110456050
chrX:110456221	TG TG	T T	1	a0001c0001t0008 a0001c0001t0008	1	NA18989.hp1 NA18989.hp1	3_prime_UTR_variant	MODIFIER	c.903delG c.903delG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4	903	INFO_REALIGN_3_PRIME	chrX	110456221
chrX:110456311	G G	A A	12	a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 others(9): Show a0001c0002t0002 a0001c0002t0004 a0001c0002t0005 a0001c0002t0006 a0001c0002t0009 a0001c0002t0010 a0001c0004t0002 a0002c0003t0002 a0003c0005t0002 a0005c0007t0005 a0007c0008t0002 a0010c0009t0002	58	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(55): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01167.hp1 HG01243.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19063.hp1 NA20300.hp2 NA21309.hp1 NA21309.hp2	3_prime_UTR_variant	MODIFIER	c.990G>A c.990G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	4/4	990		chrX	110456311

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrX:110359004	A A	G G	12	a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 others(9): Show a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	12	HG00099.hp1 HG01106.hp1 HG02145.hp1 others(9): Show HG00099.hp1 HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+88A>G c.-168+88A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110359004
chrX:110359803	G G	A A	1	a0005c0007t0005g0007 a0005c0007t0005g0007	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.-168+887G>A c.-168+887G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110359803
chrX:110359955	G G	T T	12	a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 others(9): Show a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	12	HG00099.hp1 HG01106.hp1 HG02145.hp1 others(9): Show HG00099.hp1 HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+1039G>T c.-168+1039G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110359955
chrX:110360657	T T	C C	1	a0001c0002t0009g0008 a0001c0002t0009g0008	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.-168+1741T>C c.-168+1741T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110360657
chrX:110361113	C C	G G	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+2197C>G c.-168+2197C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110361113
chrX:110361628	A A	C C	1	a0001c0001t0001g0146 a0001c0001t0001g0146	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-168+2712A>C c.-168+2712A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110361628
chrX:110361769	C C	A A	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+2853C>A c.-168+2853C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110361769
chrX:110361903	A A	G G	11	a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 others(8): Show a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0003c0005t0002g0138	12	HG01884.hp2 HG02451.hp1 HG02622.hp1 others(9): Show HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02809.hp1 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+2987A>G c.-168+2987A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110361903
chrX:110362095	T T	C C	2	a0001c0002t0002g0151 a0007c0008t0002g0150 a0001c0002t0002g0151 a0007c0008t0002g0150	2	HG00099.hp1 HG03209.hp1 HG00099.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-168+3179T>C c.-168+3179T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110362095
chrX:110362171	G G	C C	3	a0001c0004t0002g0009 a0001c0004t0002g0010 a0010c0009t0002g0011 a0001c0004t0002g0009 a0001c0004t0002g0010 a0010c0009t0002g0011	3	HG01243.hp1 HG02647.hp1 HG02818.hp2 HG01243.hp1 HG02647.hp1 HG02818.hp2	intron_variant	MODIFIER	c.-168+3255G>C c.-168+3255G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110362171
chrX:110362263	T T	G G	5	a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 others(2): Show a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154	5	HG02145.hp1 HG02258.hp1 HG03041.hp1 others(2): Show HG02145.hp1 HG02258.hp1 HG03041.hp1 HG03225.hp1 HG03486.hp2	intron_variant	MODIFIER	c.-168+3347T>G c.-168+3347T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110362263
chrX:110362267	C C	T T	1	a0001c0001t0001g0135 a0001c0001t0001g0135	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-168+3351C>T c.-168+3351C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110362267
chrX:110363002	C C	G G	11	a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 others(8): Show a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0003c0005t0002g0138	12	HG01884.hp2 HG02451.hp1 HG02622.hp1 others(9): Show HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02809.hp1 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+4086C>G c.-168+4086C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110363002
chrX:110363459	G G	A A	12	a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 others(9): Show a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	12	HG00099.hp1 HG01106.hp1 HG02145.hp1 others(9): Show HG00099.hp1 HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+4543G>A c.-168+4543G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110363459
chrX:110363606	G G	A A	16	a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0136 others(13): Show a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0138 a0010c0009t0002g0011	17	HG01243.hp1 HG01884.hp2 HG02451.hp1 others(14): Show HG01243.hp1 HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG03130.hp1 HG03139.hp1 HG03579.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+4690G>A c.-168+4690G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110363606
chrX:110363644	A A	G G	1	a0001c0001t0001g0134 a0001c0001t0001g0134	1	HG00621.hp1 HG00621.hp1	intron_variant	MODIFIER	c.-168+4728A>G c.-168+4728A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110363644
chrX:110363645	T T	C C	11	a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 others(8): Show a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0003c0005t0002g0138	12	HG01884.hp2 HG02451.hp1 HG02622.hp1 others(9): Show HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02809.hp1 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+4729T>C c.-168+4729T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110363645
chrX:110364262	C C	T T	3	a0001c0002t0005g0133 a0001c0002t0006g0132 a0005c0007t0005g0007 a0001c0002t0005g0133 a0001c0002t0006g0132 a0005c0007t0005g0007	3	HG02055.hp1 HG02630.hp1 HG03098.hp1 HG02055.hp1 HG02630.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-168+5346C>T c.-168+5346C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364262
chrX:110364289	C C	A A	16	a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0136 others(13): Show a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0138 a0010c0009t0002g0011	17	HG01243.hp1 HG01884.hp2 HG02451.hp1 others(14): Show HG01243.hp1 HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG03130.hp1 HG03139.hp1 HG03579.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+5373C>A c.-168+5373C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364289
chrX:110364375	C C	CG CG	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-168+5461dupG c.-168+5461dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110364375
chrX:110364506	G G	T T	3	a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0004t0002g0131 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0004t0002g0131	3	HG02451.hp2 HG02818.hp1 NA20300.hp2 HG02451.hp2 HG02818.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-168+5590G>T c.-168+5590G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364506
chrX:110364514	A A	G G	18	a0001c0001t0001g0135 a0001c0002t0002g0006 a0001c0002t0002g0012 others(15): Show a0001c0001t0001g0135 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0138 a0010c0009t0002g0011	19	HG01243.hp1 HG01884.hp2 HG02451.hp1 others(16): Show HG01243.hp1 HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03579.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+5598A>G c.-168+5598A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364514
chrX:110364527	C C	T T	1	a0001c0001t0003g0159 a0001c0001t0003g0159	1	NA18522.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-168+5611C>T c.-168+5611C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364527
chrX:110364544	G G	T T	1	a0001c0001t0001g0127 a0001c0001t0001g0127	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.-168+5628G>T c.-168+5628G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364544
chrX:110364545	A A	T T	1	a0001c0001t0001g0127 a0001c0001t0001g0127	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.-168+5629A>T c.-168+5629A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364545
chrX:110364707	T T	C C	1	a0001c0001t0001g0127 a0001c0001t0001g0127	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.-168+5791T>C c.-168+5791T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364707
chrX:110364726	A A	T T	14	a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 others(11): Show a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0138 a0010c0009t0002g0011	15	HG01243.hp1 HG01884.hp2 HG02451.hp1 others(12): Show HG01243.hp1 HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+5810A>T c.-168+5810A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364726
chrX:110364900	G G	T T	1	a0001c0002t0002g0012 a0001c0002t0002g0012	1	HG06807.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-168+5984G>T c.-168+5984G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364900
chrX:110364906	G G	A A	1	a0002c0003t0002g0014 a0002c0003t0002g0014	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.-168+5990G>A c.-168+5990G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364906
chrX:110364955	C C	T T	1	a0010c0009t0002g0011 a0010c0009t0002g0011	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.-168+6039C>T c.-168+6039C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110364955
chrX:110365431	G G	A A	12	a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 others(9): Show a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	12	HG00099.hp1 HG01106.hp1 HG02145.hp1 others(9): Show HG00099.hp1 HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+6515G>A c.-168+6515G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110365431
chrX:110365528	C C	T T	1	a0001c0001t0001g0126 a0001c0001t0001g0126	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.-168+6612C>T c.-168+6612C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110365528
chrX:110365544	CATA CATA	C C	3	a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137	4	HG01884.hp2 HG02451.hp1 HG03139.hp1 others(1): Show HG01884.hp2 HG02451.hp1 HG03139.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-168+6633_-168+663 others(7): Show c.-168+6633_-168+6635delTAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110365544
chrX:110365549	T T	C C	12	a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 others(9): Show a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	12	HG00099.hp1 HG01106.hp1 HG02145.hp1 others(9): Show HG00099.hp1 HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+6633T>C c.-168+6633T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110365549
chrX:110365573	T T	C C	18	a0001c0001t0001g0135 a0001c0002t0002g0006 a0001c0002t0002g0012 others(15): Show a0001c0001t0001g0135 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0138 a0010c0009t0002g0011	19	HG01243.hp1 HG01884.hp2 HG02451.hp1 others(16): Show HG01243.hp1 HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03579.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+6657T>C c.-168+6657T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110365573
chrX:110366061	C C	T T	3	a0001c0004t0002g0009 a0001c0004t0002g0010 a0010c0009t0002g0011 a0001c0004t0002g0009 a0001c0004t0002g0010 a0010c0009t0002g0011	3	HG01243.hp1 HG02647.hp1 HG02818.hp2 HG01243.hp1 HG02647.hp1 HG02818.hp2	intron_variant	MODIFIER	c.-168+7145C>T c.-168+7145C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110366061
chrX:110366771	C C	T T	13	a0001c0001t0003g0159 a0001c0002t0002g0012 a0001c0002t0002g0148 others(10): Show a0001c0001t0003g0159 a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	13	HG00099.hp1 HG01106.hp1 HG02145.hp1 others(10): Show HG00099.hp1 HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+7855C>T c.-168+7855C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110366771
chrX:110366874	A A	G G	11	a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 others(8): Show a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0003c0005t0002g0138	12	HG01884.hp2 HG02451.hp1 HG02622.hp1 others(9): Show HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02809.hp1 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+7958A>G c.-168+7958A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110366874
chrX:110366876	T T	C C	1	a0003c0005t0002g0015 a0003c0005t0002g0015	1	HG03195.hp1 HG03195.hp1	intron_variant	MODIFIER	c.-168+7960T>C c.-168+7960T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110366876
chrX:110367408	C C	T T	3	a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156	3	HG02145.hp1 HG03225.hp1 HG06807.hp2 HG02145.hp1 HG03225.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-168+8492C>T c.-168+8492C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110367408
chrX:110367450	T T	A A	15	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0012 others(12): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	15	HG00099.hp1 HG01106.hp1 HG02145.hp1 others(12): Show HG00099.hp1 HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03041.hp2 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA18522.hp1 NA19043.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-168+8534T>A c.-168+8534T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110367450
chrX:110367486	ACT ACT	A A	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-168+8576_-168+857 others(6): Show c.-168+8576_-168+8577delTC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110367486
chrX:110367973	A A	AATT AATT	76	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(73): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0127 a0001c0001t0001g0146 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0008g0073 a0001c0001t0011g0033 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0004g0034 a0001c0002t0006g0132 a0002c0003t0002g0084 a0003c0005t0002g0015 a0004c0006t0001g0045 a0004c0006t0001g0079 a0007c0008t0002g0150 a0008c0010t0001g0092 a0009c0011t0001g0068	79	HG00099.hp2 HG00280.hp1 HG00609.hp1 others(76): Show HG00099.hp2 HG00280.hp1 HG00609.hp1 HG00642.hp1 HG00673.hp1 HG00738.hp1 HG01074.hp1 HG01192.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02083.hp1 HG02129.hp1 HG02135.hp1 HG02572.hp1 HG02602.hp1 HG02630.hp1 HG02698.hp1 HG02738.hp1 HG02818.hp1 HG02886.hp1 HG02965.hp1 HG03041.hp2 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03490.hp1 HG03688.hp1 HG03942.hp1 HG04199.hp1 NA18612.hp1 NA18747.hp1 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18988.hp1 NA18989.hp1 NA18994.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19063.hp1 NA19068.hp1 NA19070.hp1 NA19076.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1	intron_variant	MODIFIER	c.-168+9100_-168+910 others(7): Show c.-168+9100_-168+9102dupATT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110367973
chrX:110367973	A A	AATTATT AATTATT	14	a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 others(11): Show a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0126 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0010g0147 a0006c0012t0001g0027	14	HG00140.hp1 HG01099.hp1 HG01952.hp1 others(11): Show HG00140.hp1 HG01099.hp1 HG01952.hp1 HG02074.hp1 HG02132.hp1 HG02300.hp1 HG02486.hp1 HG03654.hp1 HG03710.hp1 NA18945.hp1 NA18990.hp1 NA19000.hp1 NA19012.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+9097_-168+910 others(10): Show c.-168+9097_-168+9102dupATTATT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110367973
chrX:110367973	A A	AATTATTA others(2): Show AATTATTATT	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-168+9094_-168+910 others(13): Show c.-168+9094_-168+9102dupATTATTATT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110367973
chrX:110367973	A A	AATTATTA others(5): Show AATTATTATTATT	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG01255.hp1 HG01255.hp1	intron_variant	MODIFIER	c.-168+9091_-168+910 others(16): Show c.-168+9091_-168+9102dupATTATTATTATT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110367973
chrX:110367973	AATT AATT	A A	20	a0001c0001t0001g0005 a0001c0001t0001g0113 a0001c0002t0002g0006 others(17): Show a0001c0001t0001g0005 a0001c0001t0001g0113 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0114 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0002c0003t0002g0154 a0003c0005t0002g0138	22	HG01106.hp1 HG01884.hp2 HG02145.hp1 others(19): Show HG01106.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02622.hp1 HG02630.hp2 HG02809.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA18986.hp1 NA19043.hp1 NA20752.hp1 NA20905.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+9100_-168+910 others(7): Show c.-168+9100_-168+9102delATT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110367973
chrX:110367973	AATTATT AATTATT	A A	10	a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 others(7): Show a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0002t0002g0145 a0001c0004t0002g0010 a0002c0003t0002g0157 a0002c0003t0002g0158 a0010c0009t0002g0011	10	HG01243.hp1 HG02056.hp1 HG02622.hp2 others(7): Show HG01243.hp1 HG02056.hp1 HG02622.hp2 HG02647.hp1 HG02897.hp1 NA18982.hp1 NA19030.hp1 NA19055.hp1 NA19062.hp1 NA19086.hp1	intron_variant	MODIFIER	c.-168+9097_-168+910 others(10): Show c.-168+9097_-168+9102delATTATT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110367973
chrX:110367973	AATTATTA others(2): Show AATTATTATT	A A	6	a0001c0001t0003g0121 a0001c0002t0002g0122 a0001c0002t0002g0123 others(3): Show a0001c0001t0003g0121 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0004g0120 a0002c0003t0002g0125	6	HG01109.hp1 HG01167.hp1 HG02717.hp1 others(3): Show HG01109.hp1 HG01167.hp1 HG02717.hp1 HG02809.hp2 HG03471.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-168+9094_-168+910 others(13): Show c.-168+9094_-168+9102delATTATTATT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110367973
chrX:110368017	T T	TTA TTA	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.-168+9102_-168+910 others(6): Show c.-168+9102_-168+9103insAT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110368017
chrX:110368020	T T	A A	1	a0001c0001t0001g0017 a0001c0001t0001g0017	1	HG03017.hp1 HG03017.hp1	intron_variant	MODIFIER	c.-168+9104T>A c.-168+9104T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110368020
chrX:110368110	G G	A A	1	a0001c0002t0002g0130 a0001c0002t0002g0130	1	HG02451.hp2 HG02451.hp2	intron_variant	MODIFIER	c.-168+9194G>A c.-168+9194G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110368110
chrX:110368881	C C	A A	32	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 others(29): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	34	HG00099.hp1 HG01106.hp1 HG01243.hp1 others(31): Show HG00099.hp1 HG01106.hp1 HG01243.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+9965C>A c.-168+9965C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110368881
chrX:110368956	T T	C C	3	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147	3	HG03041.hp2 NA20805.hp1 NA21309.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+10040T>C c.-168+10040T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110368956
chrX:110369053	C C	T T	16	a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0136 others(13): Show a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0003c0005t0002g0138 a0010c0009t0002g0011	18	HG01243.hp1 HG01884.hp2 HG02451.hp1 others(15): Show HG01243.hp1 HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+10137C>T c.-168+10137C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110369053
chrX:110369138	C C	T T	6	a0001c0002t0002g0012 a0001c0002t0002g0152 a0001c0002t0002g0153 others(3): Show a0001c0002t0002g0012 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154	6	HG02145.hp1 HG02258.hp1 HG03041.hp1 others(3): Show HG02145.hp1 HG02258.hp1 HG03041.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-168+10222C>T c.-168+10222C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110369138
chrX:110369333	G G	A A	1	a0001c0002t0002g0136 a0001c0002t0002g0136	1	HG02451.hp1 HG02451.hp1	intron_variant	MODIFIER	c.-168+10417G>A c.-168+10417G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110369333
chrX:110369788	T T	C C	7	a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 others(4): Show a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	7	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(4): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+10872T>C c.-168+10872T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110369788
chrX:110369877	A A	C C	18	a0001c0001t0001g0135 a0001c0002t0002g0004 a0001c0002t0002g0006 others(15): Show a0001c0001t0001g0135 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	20	HG01243.hp1 HG01884.hp2 HG02451.hp1 others(17): Show HG01243.hp1 HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+10961A>C c.-168+10961A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110369877
chrX:110370685	C C	T T	1	a0001c0001t0001g0112 a0001c0001t0001g0112	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.-168+11769C>T c.-168+11769C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110370685
chrX:110371053	C C	T T	6	a0001c0002t0002g0012 a0001c0002t0002g0152 a0001c0002t0002g0153 others(3): Show a0001c0002t0002g0012 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154	6	HG02145.hp1 HG02258.hp1 HG03041.hp1 others(3): Show HG02145.hp1 HG02258.hp1 HG03041.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-168+12137C>T c.-168+12137C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110371053
chrX:110371218	C C	T T	3	a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149	3	HG01106.hp1 NA18522.hp1 NA19043.hp1 HG01106.hp1 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+12302C>T c.-168+12302C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110371218
chrX:110371745	C C	CT CT	1	a0001c0002t0005g0133 a0001c0002t0005g0133	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-168+12837dupT c.-168+12837dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110371745
chrX:110371884	A A	G G	1	a0001c0001t0001g0096 a0001c0001t0001g0096	1	HG02083.hp1 HG02083.hp1	intron_variant	MODIFIER	c.-168+12968A>G c.-168+12968A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110371884
chrX:110372499	C C	CT CT	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+13592dupT c.-168+13592dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110372499
chrX:110372630	T T	G G	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+13714T>G c.-168+13714T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110372630
chrX:110373102	A A	G G	4	a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 others(1): Show a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097	5	HG01243.hp1 HG02818.hp2 HG02886.hp2 others(2): Show HG01243.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+14186A>G c.-168+14186A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110373102
chrX:110373770	C C	A A	4	a0001c0001t0001g0013 a0001c0001t0001g0031 a0001c0001t0001g0032 others(1): Show a0001c0001t0001g0013 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0127	4	HG01256.hp1 HG02135.hp1 NA18970.hp1 others(1): Show HG01256.hp1 HG02135.hp1 NA18970.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-168+14854C>A c.-168+14854C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110373770
chrX:110374013	A A	G G	5	a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 others(2): Show a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	6	HG01243.hp1 HG02647.hp1 HG02818.hp2 others(3): Show HG01243.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+15097A>G c.-168+15097A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110374013
chrX:110374304	A A	AC AC	8	a0001c0001t0001g0135 a0001c0002t0002g0004 a0001c0002t0002g0128 others(5): Show a0001c0001t0001g0135 a0001c0002t0002g0004 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	9	HG01243.hp1 HG02647.hp1 HG02818.hp2 others(6): Show HG01243.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+15388_-168+15 others(7): Show c.-168+15388_-168+15389insC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110374304
chrX:110374323	G G	A A	5	a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 others(2): Show a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	6	HG01243.hp1 HG02647.hp1 HG02818.hp2 others(3): Show HG01243.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+15407G>A c.-168+15407G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110374323
chrX:110374374	A A	G G	1	a0001c0001t0001g0095 a0001c0001t0001g0095	1	HG02129.hp1 HG02129.hp1	intron_variant	MODIFIER	c.-168+15458A>G c.-168+15458A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110374374
chrX:110374413	T T	C C	3	a0001c0001t0001g0017 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0017 a0001c0001t0001g0098 a0001c0001t0001g0099	3	HG01069.hp1 HG02735.hp1 HG03017.hp1 HG01069.hp1 HG02735.hp1 HG03017.hp1	intron_variant	MODIFIER	c.-168+15497T>C c.-168+15497T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110374413
chrX:110374703	T T	TC TC	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-168+15788dupC c.-168+15788dupC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110374703
chrX:110374955	A A	G G	1	a0001c0002t0002g0130 a0001c0002t0002g0130	1	HG02451.hp2 HG02451.hp2	intron_variant	MODIFIER	c.-168+16039A>G c.-168+16039A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110374955
chrX:110375060	A A	C C	1	a0001c0001t0001g0094 a0001c0001t0001g0094	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.-168+16144A>C c.-168+16144A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110375060
chrX:110375080	G G	T T	31	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 others(28): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0007c0008t0002g0150 a0010c0009t0002g0011	33	HG00099.hp1 HG01106.hp1 HG01243.hp1 others(30): Show HG00099.hp1 HG01106.hp1 HG01243.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+16164G>T c.-168+16164G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110375080
chrX:110375192	G G	A A	5	a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 others(2): Show a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	6	HG01243.hp1 HG02647.hp1 HG02818.hp2 others(3): Show HG01243.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+16276G>A c.-168+16276G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110375192
chrX:110375332	T T	C C	5	a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 others(2): Show a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	6	HG01243.hp1 HG02647.hp1 HG02818.hp2 others(3): Show HG01243.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+16416T>C c.-168+16416T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110375332
chrX:110375537	GATGA GATGA	G G	26	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0006 others(23): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0001c0002t0010g0147 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150 a0010c0009t0002g0011	27	HG00099.hp1 HG01106.hp1 HG01884.hp2 others(24): Show HG00099.hp1 HG01106.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02897.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+16644_-168+16 others(10): Show c.-168+16644_-168+16647delGAAT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110375537
chrX:110375560	G G	C C	9	a0001c0001t0001g0020 a0001c0001t0001g0135 a0001c0002t0002g0152 others(6): Show a0001c0001t0001g0020 a0001c0001t0001g0135 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0002c0003t0002g0154 a0005c0007t0005g0007	9	HG02055.hp1 HG02074.hp1 HG02258.hp1 others(6): Show HG02055.hp1 HG02074.hp1 HG02258.hp1 HG02630.hp1 HG03041.hp1 HG03098.hp1 HG03486.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+16644G>C c.-168+16644G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110375560
chrX:110375560	GAATC GAATC	G G	5	a0001c0002t0002g0004 a0001c0002t0002g0144 a0001c0004t0002g0009 others(2): Show a0001c0002t0002g0004 a0001c0002t0002g0144 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097	6	HG01243.hp1 HG02809.hp1 HG02818.hp2 others(3): Show HG01243.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+16660_-168+16 others(10): Show c.-168+16660_-168+16663delCAAT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110375560
chrX:110375564	C C	G G	3	a0001c0001t0001g0093 a0001c0001t0001g0127 a0008c0010t0001g0092 a0001c0001t0001g0093 a0001c0001t0001g0127 a0008c0010t0001g0092	3	HG01256.hp1 HG01358.hp1 NA19009.hp1 HG01256.hp1 HG01358.hp1 NA19009.hp1	intron_variant	MODIFIER	c.-168+16648C>G c.-168+16648C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110375564
chrX:110375676	G G	A A	5	a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 others(2): Show a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119	5	HG02056.hp1 NA18982.hp1 NA19055.hp1 others(2): Show HG02056.hp1 NA18982.hp1 NA19055.hp1 NA19062.hp1 NA19086.hp1	intron_variant	MODIFIER	c.-168+16760G>A c.-168+16760G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110375676
chrX:110375712	A A	C C	1	a0001c0001t0001g0146 a0001c0001t0001g0146	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-168+16796A>C c.-168+16796A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110375712
chrX:110375926	C C	T T	2	a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0009 a0001c0004t0002g0010	2	HG01243.hp1 HG02818.hp2 HG01243.hp1 HG02818.hp2	intron_variant	MODIFIER	c.-168+17010C>T c.-168+17010C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110375926
chrX:110376183	G G	A A	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	NA18990.hp1 NA18990.hp1	intron_variant	MODIFIER	c.-168+17267G>A c.-168+17267G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110376183
chrX:110376286	G G	A A	1	a0001c0002t0005g0133 a0001c0002t0005g0133	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-168+17370G>A c.-168+17370G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110376286
chrX:110377102	C C	T T	1	a0002c0003t0002g0154 a0002c0003t0002g0154	1	HG03041.hp1 HG03041.hp1	intron_variant	MODIFIER	c.-168+18186C>T c.-168+18186C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110377102
chrX:110377182	T T	A A	1	a0001c0002t0002g0129 a0001c0002t0002g0129	1	HG02818.hp1 HG02818.hp1	intron_variant	MODIFIER	c.-168+18266T>A c.-168+18266T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110377182
chrX:110377375	T T	C C	1	a0001c0002t0002g0155 a0001c0002t0002g0155	1	HG03225.hp1 HG03225.hp1	intron_variant	MODIFIER	c.-168+18459T>C c.-168+18459T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110377375
chrX:110377680	T T	C C	23	a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 others(20): Show a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	24	HG00099.hp1 HG01106.hp1 HG01884.hp2 others(21): Show HG00099.hp1 HG01106.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02809.hp1 HG02897.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+18764T>C c.-168+18764T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110377680
chrX:110377819	C C	T T	1	a0001c0001t0001g0111 a0001c0001t0001g0111	1	NA18995.hp1 NA18995.hp1	intron_variant	MODIFIER	c.-168+18903C>T c.-168+18903C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110377819
chrX:110377940	C C	T T	2	a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0090 a0001c0001t0001g0091	2	NA18747.hp1 NA19089.hp1 NA18747.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-168+19024C>T c.-168+19024C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110377940
chrX:110378008	C C	CA CA	24	a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0035 others(21): Show a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0100 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0003g0121 a0001c0002t0002g0128 a0001c0002t0004g0034 a0001c0002t0004g0120 a0001c0002t0009g0008 a0001c0002t0010g0147 a0002c0003t0002g0014 a0004c0006t0001g0045	24	HG01109.hp1 HG01884.hp1 HG01928.hp1 others(21): Show HG01109.hp1 HG01884.hp1 HG01928.hp1 HG02027.hp1 HG02040.hp1 HG02602.hp1 HG02886.hp1 HG03041.hp2 HG03471.hp1 NA18948.hp1 NA18966.hp1 NA18977.hp1 NA18983.hp1 NA18985.hp1 NA18990.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19030.hp2 NA19056.hp1 NA19079.hp1 NA19082.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+19116dupA c.-168+19116dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAA CAA	3	a0001c0001t0001g0115 a0001c0001t0001g0135 a0001c0001t0011g0033 a0001c0001t0001g0115 a0001c0001t0001g0135 a0001c0001t0011g0033	3	HG02056.hp1 NA19083.hp1 NA20805.hp1 HG02056.hp1 NA19083.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-168+19115_-168+19 others(8): Show c.-168+19115_-168+19116dupAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAAA CAAA	3	a0001c0002t0002g0012 a0001c0002t0002g0144 a0001c0002t0002g0153 a0001c0002t0002g0012 a0001c0002t0002g0144 a0001c0002t0002g0153	3	HG02258.hp1 HG02809.hp1 HG06807.hp2 HG02258.hp1 HG02809.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-168+19114_-168+19 others(9): Show c.-168+19114_-168+19116dupAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAAAA CAAAA	15	a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0136 others(12): Show a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0145 a0001c0002t0002g0149 a0001c0002t0002g0152 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158	16	HG01884.hp2 HG02145.hp1 HG02451.hp1 others(13): Show HG01884.hp2 HG02145.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 NA18522.hp1 NA19030.hp1 NA19043.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+19113_-168+19 others(10): Show c.-168+19113_-168+19116dupAAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAAAAA CAAAAA	5	a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0148 others(2): Show a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0148 a0001c0002t0002g0151 a0007c0008t0002g0150	5	HG00099.hp1 HG01106.hp1 HG03209.hp1 others(2): Show HG00099.hp1 HG01106.hp1 HG03209.hp1 NA18906.hp1 NA18906.hp2	intron_variant	MODIFIER	c.-168+19112_-168+19 others(11): Show c.-168+19112_-168+19116dupAAAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAAAAAA CAAAAAA	2	a0001c0002t0002g0004 a0003c0005t0002g0097 a0001c0002t0002g0004 a0003c0005t0002g0097	3	HG02886.hp2 HG02895.hp1 HG02897.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+19111_-168+19 others(12): Show c.-168+19111_-168+19116dupAAAAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAAAAAAA CAAAAAAA	1	a0001c0004t0002g0010 a0001c0004t0002g0010	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.-168+19110_-168+19 others(13): Show c.-168+19110_-168+19116dupAAAAAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAAAAAAA others(2): Show CAAAAAAAAA	1	a0001c0004t0002g0009 a0001c0004t0002g0009	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.-168+19108_-168+19 others(15): Show c.-168+19108_-168+19116dupAAAAAAAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAAAAAAA others(4): Show CAAAAAAAAAAA	1	a0001c0002t0005g0133 a0001c0002t0005g0133	1	HG03098.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-168+19106_-168+19 others(17): Show c.-168+19106_-168+19116dupAAAAAAAAAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAAAAAAA others(10): Show CAAAAAAAAAAAAAAAAA	1	a0010c0009t0002g0011 a0010c0009t0002g0011	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.-168+19100_-168+19 others(23): Show c.-168+19100_-168+19116dupAAAAAAAAAAAAAAAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAAAAAAA others(23): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0001c0002t0006g0132 a0001c0002t0006g0132	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-168+19116_-168+19 others(36): Show c.-168+19116_-168+19117insAAAAAAAAAAAAAAAAAAAAAAAA AAAAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	C C	CAAAAAAA others(24): Show CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1	a0005c0007t0005g0007 a0005c0007t0005g0007	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.-168+19116_-168+19 others(37): Show c.-168+19116_-168+19117insAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378008	CA CA	C C	6	a0001c0001t0001g0030 a0001c0001t0001g0087 a0001c0001t0001g0088 others(3): Show a0001c0001t0001g0030 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0093 a0001c0001t0001g0099	6	HG00673.hp1 HG01069.hp1 HG01099.hp1 others(3): Show HG00673.hp1 HG01069.hp1 HG01099.hp1 HG03490.hp1 NA18965.hp1 NA19009.hp1	intron_variant	MODIFIER	c.-168+19116delA c.-168+19116delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110378008
chrX:110378032	AT AT	A A	2	a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0047 a0001c0001t0001g0048	2	HG01934.hp1 NA19091.hp1 HG01934.hp1 NA19091.hp1	intron_variant	MODIFIER	c.-168+19117delT c.-168+19117delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110378032
chrX:110378033	T T	A A	2	a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0152 a0001c0002t0002g0153	2	HG02258.hp1 HG03486.hp2 HG02258.hp1 HG03486.hp2	intron_variant	MODIFIER	c.-168+19117T>A c.-168+19117T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110378033
chrX:110378128	T T	C C	3	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147	3	HG03041.hp2 NA20805.hp1 NA21309.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+19212T>C c.-168+19212T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110378128
chrX:110379045	T T	G G	1	a0001c0002t0004g0034 a0001c0002t0004g0034	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.-168+20129T>G c.-168+20129T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110379045
chrX:110379130	A A	C C	1	a0008c0010t0001g0092 a0008c0010t0001g0092	1	HG01358.hp1 HG01358.hp1	intron_variant	MODIFIER	c.-168+20214A>C c.-168+20214A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110379130
chrX:110379192	T T	G G	3	a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051	3	NA18944.hp1 NA18952.hp1 NA18967.hp1 NA18944.hp1 NA18952.hp1 NA18967.hp1	intron_variant	MODIFIER	c.-168+20276T>G c.-168+20276T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110379192
chrX:110379546	G G	C C	3	a0001c0001t0001g0017 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0017 a0001c0001t0001g0098 a0001c0001t0001g0099	3	HG01069.hp1 HG02735.hp1 HG03017.hp1 HG01069.hp1 HG02735.hp1 HG03017.hp1	intron_variant	MODIFIER	c.-168+20630G>C c.-168+20630G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110379546
chrX:110379615	A A	G G	1	a0002c0003t0002g0014 a0002c0003t0002g0014	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.-168+20699A>G c.-168+20699A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110379615
chrX:110380136	T T	C C	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-168+21220T>C c.-168+21220T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110380136
chrX:110380297	A A	C C	34	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 others(31): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0005c0007t0005g0007 a0007c0008t0002g0150 a0010c0009t0002g0011	36	HG00099.hp1 HG01106.hp1 HG01243.hp1 others(33): Show HG00099.hp1 HG01106.hp1 HG01243.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+21381A>C c.-168+21381A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110380297
chrX:110380350	A A	G G	10	a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 others(7): Show a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140	11	HG01884.hp2 HG02451.hp1 HG02622.hp1 others(8): Show HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02809.hp1 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+21434A>G c.-168+21434A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110380350
chrX:110380353	CA CA	C C	34	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 others(31): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0005c0007t0005g0007 a0007c0008t0002g0150 a0010c0009t0002g0011	36	HG00099.hp1 HG01106.hp1 HG01243.hp1 others(33): Show HG00099.hp1 HG01106.hp1 HG01243.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+21445delA c.-168+21445delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110380353
chrX:110380581	A A	AT AT	3	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147	3	HG03041.hp2 NA20805.hp1 NA21309.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+21668dupT c.-168+21668dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110380581
chrX:110381214	A A	G G	10	a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 others(7): Show a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140	11	HG01884.hp2 HG02451.hp1 HG02622.hp1 others(8): Show HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02809.hp1 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+22298A>G c.-168+22298A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110381214
chrX:110381445	T T	A A	8	a0001c0001t0001g0135 a0001c0002t0002g0004 a0001c0002t0002g0128 others(5): Show a0001c0001t0001g0135 a0001c0002t0002g0004 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	9	HG01243.hp1 HG02647.hp1 HG02818.hp2 others(6): Show HG01243.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+22529T>A c.-168+22529T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110381445
chrX:110381469	C C	G G	10	a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 others(7): Show a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140	11	HG01884.hp2 HG02451.hp1 HG02622.hp1 others(8): Show HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02809.hp1 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+22553C>G c.-168+22553C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110381469
chrX:110381814	C C	CA CA	1	a0010c0009t0002g0011 a0010c0009t0002g0011	1	HG02647.hp1 HG02647.hp1	intron_variant	MODIFIER	c.-168+22907dupA c.-168+22907dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110381814
chrX:110382081	C C	T T	5	a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 others(2): Show a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	6	HG01243.hp1 HG02647.hp1 HG02818.hp2 others(3): Show HG01243.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+23165C>T c.-168+23165C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110382081
chrX:110382326	G G	GA GA	3	a0001c0004t0002g0009 a0001c0004t0002g0010 a0010c0009t0002g0011 a0001c0004t0002g0009 a0001c0004t0002g0010 a0010c0009t0002g0011	3	HG01243.hp1 HG02647.hp1 HG02818.hp2 HG01243.hp1 HG02647.hp1 HG02818.hp2	intron_variant	MODIFIER	c.-168+23420dupA c.-168+23420dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110382326
chrX:110382326	GA GA	G G	3	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147	3	HG03041.hp2 NA20805.hp1 NA21309.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+23420delA c.-168+23420delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110382326
chrX:110382767	C C	T T	5	a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 others(2): Show a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	6	HG01243.hp1 HG02647.hp1 HG02818.hp2 others(3): Show HG01243.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+23851C>T c.-168+23851C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110382767
chrX:110382881	A A	C C	34	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 others(31): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0005c0007t0005g0007 a0007c0008t0002g0150 a0010c0009t0002g0011	36	HG00099.hp1 HG01106.hp1 HG01243.hp1 others(33): Show HG00099.hp1 HG01106.hp1 HG01243.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+23965A>C c.-168+23965A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110382881
chrX:110383294	A A	G G	1	a0001c0002t0009g0008 a0001c0002t0009g0008	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.-168+24378A>G c.-168+24378A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110383294
chrX:110383953	C C	T T	23	a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 others(20): Show a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	24	HG00099.hp1 HG01106.hp1 HG01884.hp2 others(21): Show HG00099.hp1 HG01106.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02809.hp1 HG02897.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+25037C>T c.-168+25037C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110383953
chrX:110384226	A A	G G	1	a0001c0002t0002g0086 a0001c0002t0002g0086	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-168+25310A>G c.-168+25310A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110384226
chrX:110384527	T T	G G	13	a0001c0001t0003g0159 a0001c0002t0002g0012 a0001c0002t0002g0148 others(10): Show a0001c0001t0003g0159 a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	13	HG00099.hp1 HG01106.hp1 HG02145.hp1 others(10): Show HG00099.hp1 HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+25611T>G c.-168+25611T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110384527
chrX:110384620	T T	C C	23	a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 others(20): Show a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	24	HG00099.hp1 HG01106.hp1 HG01884.hp2 others(21): Show HG00099.hp1 HG01106.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02809.hp1 HG02897.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+25704T>C c.-168+25704T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110384620
chrX:110384629	T T	C C	1	a0002c0003t0002g0154 a0002c0003t0002g0154	1	HG03041.hp1 HG03041.hp1	intron_variant	MODIFIER	c.-168+25713T>C c.-168+25713T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110384629
chrX:110385222	T T	A A	2	a0002c0003t0002g0157 a0002c0003t0002g0158 a0002c0003t0002g0157 a0002c0003t0002g0158	2	HG02622.hp2 HG02897.hp1 HG02622.hp2 HG02897.hp1	intron_variant	MODIFIER	c.-168+26306T>A c.-168+26306T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110385222
chrX:110385529	C C	T T	1	a0001c0002t0002g0128 a0001c0002t0002g0128	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-168+26613C>T c.-168+26613C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110385529
chrX:110385769	CCAGA CCAGA	C C	5	a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 others(2): Show a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	6	HG01243.hp1 HG02647.hp1 HG02818.hp2 others(3): Show HG01243.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+26857_-168+26 others(10): Show c.-168+26857_-168+26860delACAG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110385769
chrX:110386223	C C	T T	3	a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051	3	NA18944.hp1 NA18952.hp1 NA18967.hp1 NA18944.hp1 NA18952.hp1 NA18967.hp1	intron_variant	MODIFIER	c.-168+27307C>T c.-168+27307C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110386223
chrX:110386682	G G	A A	1	a0001c0002t0002g0128 a0001c0002t0002g0128	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-168+27766G>A c.-168+27766G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110386682
chrX:110386848	A A	C C	4	a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 others(1): Show a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119	4	NA18982.hp1 NA19055.hp1 NA19062.hp1 others(1): Show NA18982.hp1 NA19055.hp1 NA19062.hp1 NA19086.hp1	intron_variant	MODIFIER	c.-168+27932A>C c.-168+27932A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110386848
chrX:110386864	A A	G G	31	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 others(28): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0007c0008t0002g0150 a0010c0009t0002g0011	33	HG00099.hp1 HG01106.hp1 HG01243.hp1 others(30): Show HG00099.hp1 HG01106.hp1 HG01243.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+27948A>G c.-168+27948A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110386864
chrX:110387365	A A	G G	10	a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 others(7): Show a0001c0002t0002g0006 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140	11	HG01884.hp2 HG02451.hp1 HG02622.hp1 others(8): Show HG01884.hp2 HG02451.hp1 HG02622.hp1 HG02809.hp1 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+28449A>G c.-168+28449A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110387365
chrX:110387479	A A	C C	31	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 others(28): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0007c0008t0002g0150 a0010c0009t0002g0011	33	HG00099.hp1 HG01106.hp1 HG01243.hp1 others(30): Show HG00099.hp1 HG01106.hp1 HG01243.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+28563A>C c.-168+28563A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110387479
chrX:110387543	G G	T T	3	a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0001t0003g0159 a0001c0002t0002g0148 a0001c0002t0002g0149	3	HG01106.hp1 NA18522.hp1 NA19043.hp1 HG01106.hp1 NA18522.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+28627G>T c.-168+28627G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110387543
chrX:110387850	C C	CCT CCT	3	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147	3	HG03041.hp2 NA20805.hp1 NA21309.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+28941_-168+28 others(8): Show c.-168+28941_-168+28942dupCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110387850
chrX:110387857	C C	CT CT	16	a0001c0001t0001g0003 a0001c0001t0001g0046 a0001c0001t0001g0100 others(13): Show a0001c0001t0001g0003 a0001c0001t0001g0046 a0001c0001t0001g0100 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0011g0033 a0001c0002t0002g0012 a0001c0002t0002g0086 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0084 a0002c0003t0002g0154 a0003c0005t0002g0015 a0005c0007t0005g0007	17	HG01192.hp1 HG02055.hp1 HG02145.hp1 others(14): Show HG01192.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02572.hp1 HG02965.hp1 HG03041.hp1 HG03195.hp1 HG03195.hp2 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA18943.hp1 NA18985.hp1 NA19063.hp1 NA19079.hp1 NA19083.hp1	intron_variant	MODIFIER	c.-168+28963dupT c.-168+28963dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110387857
chrX:110387857	C C	CTCT CTCT	4	a0001c0002t0002g0004 a0001c0004t0002g0010 a0003c0005t0002g0097 others(1): Show a0001c0002t0002g0004 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	5	HG01243.hp1 HG02647.hp1 HG02886.hp2 others(2): Show HG01243.hp1 HG02647.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+28942_-168+28 others(9): Show c.-168+28942_-168+28943insCTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110387857
chrX:110387857	C C	CTCTT CTCTT	1	a0001c0004t0002g0009 a0001c0004t0002g0009	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.-168+28942_-168+28 others(10): Show c.-168+28942_-168+28943insCTTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110387857
chrX:110387857	CT CT	C C	5	a0001c0001t0001g0035 a0001c0001t0001g0113 a0001c0002t0002g0148 others(2): Show a0001c0001t0001g0035 a0001c0001t0001g0113 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0006g0132	5	HG01106.hp1 HG02630.hp1 NA18986.hp1 others(2): Show HG01106.hp1 HG02630.hp1 NA18986.hp1 NA19043.hp1 NA19056.hp1	intron_variant	MODIFIER	c.-168+28963delT c.-168+28963delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110387857
chrX:110388161	A A	G G	34	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 others(31): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0005c0007t0005g0007 a0007c0008t0002g0150 a0010c0009t0002g0011	36	HG00099.hp1 HG01106.hp1 HG01243.hp1 others(33): Show HG00099.hp1 HG01106.hp1 HG01243.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20805.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+29245A>G c.-168+29245A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110388161
chrX:110388752	G G	A A	1	a0001c0001t0001g0052 a0001c0001t0001g0052	1	NA19060.hp1 NA19060.hp1	intron_variant	MODIFIER	c.-168+29836G>A c.-168+29836G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110388752
chrX:110388795	A A	G G	16	a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0012 others(13): Show a0001c0001t0001g0135 a0001c0001t0003g0159 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0010g0147 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	16	HG00099.hp1 HG01106.hp1 HG02145.hp1 others(13): Show HG00099.hp1 HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03041.hp2 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA18522.hp1 NA19043.hp1 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+29879A>G c.-168+29879A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110388795
chrX:110388924	G G	A A	3	a0001c0002t0005g0133 a0001c0002t0006g0132 a0005c0007t0005g0007 a0001c0002t0005g0133 a0001c0002t0006g0132 a0005c0007t0005g0007	3	HG02055.hp1 HG02630.hp1 HG03098.hp1 HG02055.hp1 HG02630.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-168+30008G>A c.-168+30008G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110388924
chrX:110389200	G G	A A	1	a0001c0001t0001g0101 a0001c0001t0001g0101	1	HG04228.hp1 HG04228.hp1	intron_variant	MODIFIER	c.-168+30284G>A c.-168+30284G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110389200
chrX:110389273	C C	T T	23	a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 others(20): Show a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	24	HG00099.hp1 HG01106.hp1 HG01884.hp2 others(21): Show HG00099.hp1 HG01106.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02809.hp1 HG02897.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+30357C>T c.-168+30357C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110389273
chrX:110389288	G G	GT GT	1	a0001c0001t0003g0121 a0001c0001t0003g0121	1	HG01109.hp1 HG01109.hp1	intron_variant	MODIFIER	c.-168+30379dupT c.-168+30379dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110389288
chrX:110389300	A A	G G	23	a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 others(20): Show a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	24	HG00099.hp1 HG01106.hp1 HG01884.hp2 others(21): Show HG00099.hp1 HG01106.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02622.hp1 HG02622.hp2 HG02809.hp1 HG02897.hp1 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+30384A>G c.-168+30384A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110389300
chrX:110389452	A A	G G	1	a0001c0001t0001g0082 a0001c0001t0001g0082	1	HG03942.hp1 HG03942.hp1	intron_variant	MODIFIER	c.-168+30536A>G c.-168+30536A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110389452
chrX:110389982	A A	G G	6	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	6	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(3): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+31066A>G c.-168+31066A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110389982
chrX:110390294	G G	A A	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+31378G>A c.-168+31378G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110390294
chrX:110390368	A A	G G	12	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(9): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	12	HG00099.hp1 HG01106.hp1 HG02145.hp1 others(9): Show HG00099.hp1 HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-168+31452A>G c.-168+31452A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110390368
chrX:110390860	T T	G G	6	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	6	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(3): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+31944T>G c.-168+31944T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110390860
chrX:110390936	T T	C C	1	a0001c0001t0001g0116 a0001c0001t0001g0116	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-168+32020T>C c.-168+32020T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110390936
chrX:110391569	T T	A A	5	a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 others(2): Show a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 a0003c0005t0002g0097 a0010c0009t0002g0011	6	HG01243.hp1 HG02647.hp1 HG02818.hp2 others(3): Show HG01243.hp1 HG02647.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-168+32653T>A c.-168+32653T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110391569
chrX:110391703	C C	G G	1	a0001c0002t0002g0129 a0001c0002t0002g0129	1	HG02818.hp1 HG02818.hp1	intron_variant	MODIFIER	c.-168+32787C>G c.-168+32787C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110391703
chrX:110391796	C C	T T	4	a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 others(1): Show a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111	4	NA18953.hp1 NA18995.hp1 NA19066.hp1 others(1): Show NA18953.hp1 NA18995.hp1 NA19066.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-168+32880C>T c.-168+32880C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110391796
chrX:110391989	C C	A A	3	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147	3	HG03041.hp2 NA20805.hp1 NA21309.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+33073C>A c.-168+33073C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110391989
chrX:110392272	G G	GT GT	16	a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0081 others(13): Show a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0081 a0001c0001t0001g0089 a0001c0001t0001g0135 a0001c0001t0001g0146 a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0010g0147 a0001c0004t0002g0010 a0002c0003t0002g0158 a0008c0010t0001g0092	17	HG00673.hp1 HG01243.hp1 HG01358.hp1 others(14): Show HG00673.hp1 HG01243.hp1 HG01358.hp1 HG01884.hp2 HG01934.hp1 HG02451.hp1 HG02486.hp1 HG02622.hp2 HG02738.hp1 HG03041.hp2 HG03139.hp1 NA18906.hp1 NA18906.hp2 NA18974.hp1 NA19091.hp1 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+33378dupT c.-168+33378dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110392272
chrX:110392272	G G	GTT GTT	2	a0001c0001t0001g0093 a0001c0004t0002g0009 a0001c0001t0001g0093 a0001c0004t0002g0009	2	HG02818.hp2 NA19009.hp1 HG02818.hp2 NA19009.hp1	intron_variant	MODIFIER	c.-168+33377_-168+33 others(8): Show c.-168+33377_-168+33378dupTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110392272
chrX:110392272	GT GT	G G	14	a0001c0001t0001g0036 a0001c0001t0001g0087 a0001c0001t0001g0117 others(11): Show a0001c0001t0001g0036 a0001c0001t0001g0087 a0001c0001t0001g0117 a0001c0001t0001g0127 a0001c0001t0003g0121 a0001c0002t0002g0012 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0005g0133 a0001c0002t0006g0132 a0002c0003t0002g0154 a0005c0007t0005g0007	14	HG01109.hp1 HG01256.hp1 HG02055.hp1 others(11): Show HG01109.hp1 HG01256.hp1 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02630.hp1 HG03041.hp1 HG03098.hp1 HG03225.hp1 HG03486.hp2 HG03490.hp1 HG06807.hp2 NA18948.hp1 NA19086.hp1	intron_variant	MODIFIER	c.-168+33378delT c.-168+33378delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110392272
chrX:110392272	GTTTT GTTTT	G G	1	a0001c0001t0001g0112 a0001c0001t0001g0112	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.-168+33375_-168+33 others(10): Show c.-168+33375_-168+33378delTTTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110392272
chrX:110392327	G G	A A	3	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147	3	HG03041.hp2 NA20805.hp1 NA21309.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+33411G>A c.-168+33411G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110392327
chrX:110392415	T T	TA TA	3	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147	3	HG03041.hp2 NA20805.hp1 NA21309.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+33500dupA c.-168+33500dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110392415
chrX:110392460	T T	A A	2	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0001t0001g0135 a0001c0002t0002g0128	2	HG03041.hp2 NA20805.hp1 HG03041.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-168+33544T>A c.-168+33544T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110392460
chrX:110392534	C C	T T	3	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0002t0010g0147	3	HG03041.hp2 NA20805.hp1 NA21309.hp2 HG03041.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+33618C>T c.-168+33618C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110392534
chrX:110392840	A A	G G	1	a0001c0001t0001g0087 a0001c0001t0001g0087	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.-168+33924A>G c.-168+33924A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110392840
chrX:110393222	C C	G G	23	a0001c0001t0001g0135 a0001c0002t0002g0004 a0001c0002t0002g0012 others(20): Show a0001c0001t0001g0135 a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	24	HG00099.hp1 HG01106.hp1 HG01243.hp1 others(21): Show HG00099.hp1 HG01106.hp1 HG01243.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA19043.hp1 NA20300.hp2 NA20805.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+34306C>G c.-168+34306C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110393222
chrX:110393382	A A	G G	2	a0001c0001t0001g0135 a0001c0002t0002g0128 a0001c0001t0001g0135 a0001c0002t0002g0128	2	HG03041.hp2 NA20805.hp1 HG03041.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-168+34466A>G c.-168+34466A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110393382
chrX:110393397	C C	A A	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+34481C>A c.-168+34481C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110393397
chrX:110393602	C C	T T	1	a0001c0001t0001g0028 a0001c0001t0001g0028	1	NA19012.hp1 NA19012.hp1	intron_variant	MODIFIER	c.-168+34686C>T c.-168+34686C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110393602
chrX:110393984	A A	G G	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+35068A>G c.-168+35068A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110393984
chrX:110394168	G G	A A	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+35252G>A c.-168+35252G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110394168
chrX:110394187	T T	C C	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+35271T>C c.-168+35271T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110394187
chrX:110394356	A A	T T	1	a0001c0001t0001g0080 a0001c0001t0001g0080	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.-168+35440A>T c.-168+35440A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110394356
chrX:110394393	A A	G G	4	a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 others(1): Show a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154	4	HG02145.hp1 HG03041.hp1 HG03225.hp1 others(1): Show HG02145.hp1 HG03041.hp1 HG03225.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-168+35477A>G c.-168+35477A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110394393
chrX:110394493	T T	C C	10	a0001c0002t0002g0004 a0001c0002t0002g0152 a0001c0002t0002g0153 others(7): Show a0001c0002t0002g0004 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0125 a0003c0005t0002g0097 a0003c0005t0002g0138 a0010c0009t0002g0011	11	HG01243.hp1 HG02258.hp1 HG02630.hp2 others(8): Show HG01243.hp1 HG02258.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG03486.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-168+35577T>C c.-168+35577T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110394493
chrX:110394544	A A	G G	6	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	6	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(3): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+35628A>G c.-168+35628A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110394544
chrX:110395246	G G	A A	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+36330G>A c.-168+36330G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110395246
chrX:110395399	C C	T T	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+36483C>T c.-168+36483C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110395399
chrX:110395564	A A	C C	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+36648A>C c.-168+36648A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110395564
chrX:110395612	A A	G G	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	NA18990.hp1 NA18990.hp1	intron_variant	MODIFIER	c.-168+36696A>G c.-168+36696A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110395612
chrX:110395679	G G	A A	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+36763G>A c.-168+36763G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110395679
chrX:110395779	T T	A A	14	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0152 others(11): Show a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0125 a0002c0003t0002g0154 a0003c0005t0002g0097 a0003c0005t0002g0138 a0010c0009t0002g0011	15	HG01243.hp1 HG02145.hp1 HG02258.hp1 others(12): Show HG01243.hp1 HG02145.hp1 HG02258.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG03041.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-168+36863T>A c.-168+36863T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110395779
chrX:110396146	G G	A A	1	a0001c0002t0002g0128 a0001c0002t0002g0128	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-168+37230G>A c.-168+37230G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110396146
chrX:110396286	A A	G G	8	a0001c0002t0002g0128 a0001c0002t0002g0148 a0001c0002t0002g0149 others(5): Show a0001c0002t0002g0128 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0010g0147 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	8	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(5): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp2 HG03209.hp1 NA19043.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+37370A>G c.-168+37370A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110396286
chrX:110396437	TC TC	T T	8	a0001c0002t0002g0128 a0001c0002t0002g0148 a0001c0002t0002g0149 others(5): Show a0001c0002t0002g0128 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0010g0147 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	8	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(5): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp2 HG03209.hp1 NA19043.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-168+37528delC c.-168+37528delC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110396437
chrX:110396682	A A	T T	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+37766A>T c.-168+37766A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110396682
chrX:110396802	G G	T T	6	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	6	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(3): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+37886G>T c.-168+37886G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110396802
chrX:110396807	C C	T T	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+37891C>T c.-168+37891C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110396807
chrX:110396827	G G	A A	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+37911G>A c.-168+37911G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110396827
chrX:110396967	G G	A A	3	a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0134 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0134	3	HG00621.hp1 HG01934.hp1 NA19091.hp1 HG00621.hp1 HG01934.hp1 NA19091.hp1	intron_variant	MODIFIER	c.-168+38051G>A c.-168+38051G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110396967
chrX:110397247	C C	T T	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+38331C>T c.-168+38331C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110397247
chrX:110397272	T T	A A	1	a0001c0001t0001g0102 a0001c0001t0001g0102	1	NA20300.hp1 NA20300.hp1	intron_variant	MODIFIER	c.-168+38356T>A c.-168+38356T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110397272
chrX:110397810	G G	C C	6	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	6	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(3): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+38894G>C c.-168+38894G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110397810
chrX:110397853	A A	AC AC	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+38942dupC c.-168+38942dupC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110397853
chrX:110398487	T T	C C	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+39571T>C c.-168+39571T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110398487
chrX:110399022	A A	G G	1	a0002c0003t0002g0154 a0002c0003t0002g0154	1	HG03041.hp1 HG03041.hp1	intron_variant	MODIFIER	c.-168+40106A>G c.-168+40106A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110399022
chrX:110399137	C C	T T	1	a0001c0001t0001g0126 a0001c0001t0001g0126	1	HG03654.hp1 HG03654.hp1	intron_variant	MODIFIER	c.-168+40221C>T c.-168+40221C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110399137
chrX:110399281	C C	G G	1	a0007c0008t0002g0150 a0007c0008t0002g0150	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-168+40365C>G c.-168+40365C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110399281
chrX:110399486	G G	GA GA	1	a0001c0001t0001g0081 a0001c0001t0001g0081	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-168+40576dupA c.-168+40576dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110399486
chrX:110399643	A A	G G	2	a0004c0006t0001g0045 a0004c0006t0001g0079 a0004c0006t0001g0045 a0004c0006t0001g0079	2	HG02602.hp1 HG04199.hp1 HG02602.hp1 HG04199.hp1	intron_variant	MODIFIER	c.-168+40727A>G c.-168+40727A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110399643
chrX:110400158	C C	T T	1	a0007c0008t0002g0150 a0007c0008t0002g0150	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-168+41242C>T c.-168+41242C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110400158
chrX:110400217	A A	G G	1	a0001c0001t0001g0080 a0001c0001t0001g0080	1	NA18984.hp1 NA18984.hp1	intron_variant	MODIFIER	c.-168+41301A>G c.-168+41301A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110400217
chrX:110400763	G G	A A	2	a0001c0001t0001g0087 a0001c0002t0002g0053 a0001c0001t0001g0087 a0001c0002t0002g0053	2	HG03490.hp1 HG03688.hp1 HG03490.hp1 HG03688.hp1	intron_variant	MODIFIER	c.-168+41847G>A c.-168+41847G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110400763
chrX:110400796	C C	T T	22	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0128 others(19): Show a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0128 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	23	HG00099.hp1 HG01106.hp1 HG01243.hp1 others(20): Show HG00099.hp1 HG01106.hp1 HG01243.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA19043.hp1 NA20300.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-168+41880C>T c.-168+41880C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110400796
chrX:110400901	G G	A A	1	a0001c0001t0001g0054 a0001c0001t0001g0054	1	NA18960.hp1 NA18960.hp1	intron_variant	MODIFIER	c.-168+41985G>A c.-168+41985G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110400901
chrX:110401023	G G	A A	2	a0001c0002t0002g0129 a0001c0002t0005g0133 a0001c0002t0002g0129 a0001c0002t0005g0133	2	HG02818.hp1 HG03098.hp1 HG02818.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-168+42107G>A c.-168+42107G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110401023
chrX:110401050	C C	T T	5	a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 others(2): Show a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119	5	HG02056.hp1 NA18982.hp1 NA19055.hp1 others(2): Show HG02056.hp1 NA18982.hp1 NA19055.hp1 NA19062.hp1 NA19086.hp1	intron_variant	MODIFIER	c.-168+42134C>T c.-168+42134C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110401050
chrX:110401181	C C	T T	12	a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0124 others(9): Show a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0124 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140	13	HG01884.hp2 HG02451.hp1 HG02486.hp1 others(10): Show HG01884.hp2 HG02451.hp1 HG02486.hp1 HG02622.hp1 HG02717.hp1 HG02809.hp1 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-168+42265C>T c.-168+42265C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110401181
chrX:110401310	TCC TCC	T T	1	a0001c0002t0002g0143 a0001c0002t0002g0143	1	HG03130.hp1 HG03130.hp1	intron_variant	MODIFIER	c.-168+42396_-168+42 others(8): Show c.-168+42396_-168+42397delCC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110401310
chrX:110401313	C C	T T	1	a0001c0002t0002g0143 a0001c0002t0002g0143	1	HG03130.hp1 HG03130.hp1	intron_variant	MODIFIER	c.-168+42397C>T c.-168+42397C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110401313
chrX:110401492	A A	G G	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-168+42576A>G c.-168+42576A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110401492
chrX:110401576	G G	C C	1	a0001c0001t0001g0087 a0001c0001t0001g0087	1	HG03490.hp1 HG03490.hp1	intron_variant	MODIFIER	c.-168+42660G>C c.-168+42660G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110401576
chrX:110401782	G G	A A	1	a0001c0002t0002g0128 a0001c0002t0002g0128	1	HG03041.hp2 HG03041.hp2	intron_variant	MODIFIER	c.-168+42866G>A c.-168+42866G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110401782
chrX:110401852	C C	T T	1	a0001c0002t0002g0114 a0001c0002t0002g0114	1	HG06807.hp1 HG06807.hp1	intron_variant	MODIFIER	c.-168+42936C>T c.-168+42936C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110401852
chrX:110402178	T T	G G	3	a0001c0001t0001g0037 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0037 a0001c0001t0001g0055 a0001c0001t0001g0056	3	NA18959.hp1 NA18966.hp1 NA19070.hp1 NA18959.hp1 NA18966.hp1 NA19070.hp1	intron_variant	MODIFIER	c.-167-42975T>G c.-167-42975T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110402178
chrX:110403412	C C	T T	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-167-41741C>T c.-167-41741C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110403412
chrX:110403459	C C	G G	6	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	6	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(3): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-41694C>G c.-167-41694C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110403459
chrX:110403491	T T	C C	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-167-41662T>C c.-167-41662T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110403491
chrX:110403693	C C	T T	1	a0001c0002t0002g0123 a0001c0002t0002g0123	1	HG01167.hp1 HG01167.hp1	intron_variant	MODIFIER	c.-167-41460C>T c.-167-41460C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110403693
chrX:110404071	G G	A A	1	a0001c0001t0001g0081 a0001c0001t0001g0081	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.-167-41082G>A c.-167-41082G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110404071
chrX:110404269	G G	A A	2	a0001c0002t0002g0128 a0001c0002t0010g0147 a0001c0002t0002g0128 a0001c0002t0010g0147	2	HG03041.hp2 NA21309.hp2 HG03041.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-167-40884G>A c.-167-40884G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110404269
chrX:110404327	A A	T T	1	a0001c0002t0002g0078 a0001c0002t0002g0078	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.-167-40826A>T c.-167-40826A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110404327
chrX:110404350	G G	A A	1	a0002c0003t0002g0125 a0002c0003t0002g0125	1	HG02809.hp2 HG02809.hp2	intron_variant	MODIFIER	c.-167-40803G>A c.-167-40803G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110404350
chrX:110404506	T T	C C	1	a0001c0002t0002g0151 a0001c0002t0002g0151	1	HG00099.hp1 HG00099.hp1	intron_variant	MODIFIER	c.-167-40647T>C c.-167-40647T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110404506
chrX:110404921	G G	A A	4	a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 others(1): Show a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154	4	HG02145.hp1 HG03041.hp1 HG03225.hp1 others(1): Show HG02145.hp1 HG03041.hp1 HG03225.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-167-40232G>A c.-167-40232G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110404921
chrX:110404977	T T	C C	1	a0001c0002t0002g0086 a0001c0002t0002g0086	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-167-40176T>C c.-167-40176T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110404977
chrX:110405087	GTCC GTCC	G G	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-167-40065_-167-40 others(9): Show c.-167-40065_-167-40063delTCC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405087
chrX:110405088	T T	TC TC	29	a0001c0001t0001g0002 a0001c0001t0001g0037 a0001c0001t0001g0044 others(26): Show a0001c0001t0001g0002 a0001c0001t0001g0037 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0052 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0001g0089 a0001c0001t0001g0094 a0001c0001t0001g0115 a0001c0001t0001g0127 a0001c0001t0001g0134 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0159 a0001c0002t0002g0026 a0001c0002t0002g0053 a0001c0002t0002g0114 a0001c0002t0002g0123 a0001c0002t0002g0130 a0001c0002t0006g0132 a0001c0013t0001g0106 a0002c0003t0002g0014 a0002c0003t0002g0084 a0003c0005t0002g0015 a0006c0012t0001g0027	30	HG00140.hp1 HG00621.hp1 HG00673.hp1 others(27): Show HG00140.hp1 HG00621.hp1 HG00673.hp1 HG00738.hp1 HG01167.hp1 HG01256.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02056.hp1 HG02451.hp2 HG02572.hp1 HG02630.hp1 HG02965.hp1 HG03195.hp1 HG03195.hp2 HG03688.hp1 HG03942.hp1 HG04204.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18966.hp1 NA18983.hp1 NA18985.hp1 NA19030.hp2 NA19060.hp1 NA19076.hp1 NA19091.hp1	intron_variant	MODIFIER	c.-167-40052dupC c.-167-40052dupC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110405088
chrX:110405088	T T	TCC TCC	3	a0001c0001t0001g0077 a0001c0002t0002g0128 a0005c0007t0005g0007 a0001c0001t0001g0077 a0001c0002t0002g0128 a0005c0007t0005g0007	3	HG01261.hp1 HG02055.hp1 HG03041.hp2 HG01261.hp1 HG02055.hp1 HG03041.hp2	intron_variant	MODIFIER	c.-167-40053_-167-40 others(8): Show c.-167-40053_-167-40052dupCC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110405088
chrX:110405088	T T	TCCC TCCC	2	a0001c0001t0001g0017 a0001c0001t0001g0098 a0001c0001t0001g0017 a0001c0001t0001g0098	2	HG02735.hp1 HG03017.hp1 HG02735.hp1 HG03017.hp1	intron_variant	MODIFIER	c.-167-40054_-167-40 others(9): Show c.-167-40054_-167-40052dupCCC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110405088
chrX:110405088	T T	TCCCC TCCCC	1	a0001c0001t0001g0099 a0001c0001t0001g0099	1	HG01069.hp1 HG01069.hp1	intron_variant	MODIFIER	c.-167-40055_-167-40 others(10): Show c.-167-40055_-167-40052dupCCCC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110405088
chrX:110405088	TC TC	T T	11	a0001c0001t0001g0093 a0001c0002t0002g0004 a0001c0002t0002g0012 others(8): Show a0001c0001t0001g0093 a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0129 a0001c0002t0002g0156 a0001c0002t0004g0034 a0001c0002t0005g0133 a0001c0004t0002g0009 a0001c0004t0002g0131 a0002c0003t0002g0154 a0003c0005t0002g0097	12	HG02145.hp1 HG02818.hp1 HG02818.hp2 others(9): Show HG02145.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG03041.hp1 HG03098.hp1 HG06807.hp2 NA19009.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-167-40052delC c.-167-40052delC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110405088
chrX:110405088	TCC TCC	T T	14	a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0124 others(11): Show a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0124 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0004g0140 a0002c0003t0002g0125 a0010c0009t0002g0011	15	HG01884.hp2 HG02451.hp1 HG02486.hp1 others(12): Show HG01884.hp2 HG02451.hp1 HG02486.hp1 HG02622.hp1 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG03130.hp1 HG03139.hp1 HG03579.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-167-40053_-167-40 others(8): Show c.-167-40053_-167-40052delCC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110405088
chrX:110405088	TCCC TCCC	T T	6	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	6	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(3): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-40054_-167-40 others(9): Show c.-167-40054_-167-40052delCCC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110405088
chrX:110405094	C C	A A	1	a0001c0002t0004g0034 a0001c0002t0004g0034	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.-167-40059C>A c.-167-40059C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405094
chrX:110405095	C C	G G	1	a0001c0001t0001g0146 a0001c0001t0001g0146	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-167-40058C>G c.-167-40058C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405095
chrX:110405098	C C	T T	2	a0001c0002t0002g0124 a0003c0005t0002g0138 a0001c0002t0002g0124 a0003c0005t0002g0138	2	HG02630.hp2 HG02717.hp1 HG02630.hp2 HG02717.hp1	intron_variant	MODIFIER	c.-167-40055C>T c.-167-40055C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405098
chrX:110405099	C C	G G	1	a0001c0001t0001g0107 a0001c0001t0001g0107	1	HG02071.hp1 HG02071.hp1	intron_variant	MODIFIER	c.-167-40054C>G c.-167-40054C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405099
chrX:110405099	C C	T T	6	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	6	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(3): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-40054C>T c.-167-40054C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405099
chrX:110405101	C C	A A	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-167-40052C>A c.-167-40052C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405101
chrX:110405111	T T	G G	1	a0005c0007t0005g0007 a0005c0007t0005g0007	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.-167-40042T>G c.-167-40042T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405111
chrX:110405202	G G	A A	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-167-39951G>A c.-167-39951G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405202
chrX:110405466	T T	C C	6	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	6	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(3): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-39687T>C c.-167-39687T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405466
chrX:110405868	G G	T T	2	a0001c0001t0001g0074 a0006c0012t0001g0027 a0001c0001t0001g0074 a0006c0012t0001g0027	2	HG01952.hp1 NA19058.hp1 HG01952.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-39285G>T c.-167-39285G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110405868
chrX:110406114	G G	GT GT	2	a0001c0001t0001g0051 a0001c0001t0001g0117 a0001c0001t0001g0051 a0001c0001t0001g0117	2	NA18967.hp1 NA19086.hp1 NA18967.hp1 NA19086.hp1	intron_variant	MODIFIER	c.-167-39027dupT c.-167-39027dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110406114
chrX:110406114	G G	T T	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-167-39039G>T c.-167-39039G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110406114
chrX:110406114	GTT GTT	G G	1	a0007c0008t0002g0150 a0007c0008t0002g0150	1	HG03209.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-167-39028_-167-39 others(8): Show c.-167-39028_-167-39027delTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110406114
chrX:110406264	C C	G G	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-167-38889C>G c.-167-38889C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110406264
chrX:110406352	C C	T T	1	a0001c0001t0001g0043 a0001c0001t0001g0043	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.-167-38801C>T c.-167-38801C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110406352
chrX:110406384	G G	C C	6	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	6	HG00099.hp1 HG01106.hp1 HG02622.hp2 others(3): Show HG00099.hp1 HG01106.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-38769G>C c.-167-38769G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110406384
chrX:110406429	C C	T T	3	a0001c0002t0002g0152 a0001c0002t0002g0153 a0003c0005t0002g0138 a0001c0002t0002g0152 a0001c0002t0002g0153 a0003c0005t0002g0138	3	HG02258.hp1 HG02630.hp2 HG03486.hp2 HG02258.hp1 HG02630.hp2 HG03486.hp2	intron_variant	MODIFIER	c.-167-38724C>T c.-167-38724C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110406429
chrX:110406537	TG TG	T T	5	a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 others(2): Show a0001c0002t0002g0004 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0003c0005t0002g0097	6	HG01243.hp1 HG02818.hp2 HG02886.hp2 others(3): Show HG01243.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-167-38615delG c.-167-38615delG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110406537
chrX:110407088	G G	A A	1	a0001c0001t0001g0057 a0001c0001t0001g0057	1	NA19007.hp1 NA19007.hp1	intron_variant	MODIFIER	c.-167-38065G>A c.-167-38065G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110407088
chrX:110407212	A A	AT AT	1	a0001c0001t0001g0135 a0001c0001t0001g0135	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.-167-37937dupT c.-167-37937dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110407212
chrX:110407279	G G	A A	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-167-37874G>A c.-167-37874G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110407279
chrX:110407365	A A	C C	6	a0001c0002t0002g0004 a0001c0002t0010g0147 a0001c0004t0002g0009 others(3): Show a0001c0002t0002g0004 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0003c0005t0002g0097	7	HG01243.hp1 HG02818.hp2 HG02886.hp2 others(4): Show HG01243.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 NA20300.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-167-37788A>C c.-167-37788A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110407365
chrX:110407576	C C	T T	1	a0001c0001t0001g0094 a0001c0001t0001g0094	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.-167-37577C>T c.-167-37577C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110407576
chrX:110408121	G G	A A	1	a0001c0002t0002g0058 a0001c0002t0002g0058	1	HG01258.hp1 HG01258.hp1	intron_variant	MODIFIER	c.-167-37032G>A c.-167-37032G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110408121
chrX:110408546	T T	C C	28	a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 others(25): Show a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0029 a0001c0002t0002g0124 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	30	HG01106.hp1 HG01884.hp2 HG02145.hp1 others(27): Show HG01106.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02486.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-167-36607T>C c.-167-36607T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110408546
chrX:110408560	T T	C C	28	a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 others(25): Show a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0029 a0001c0002t0002g0124 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0140 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	30	HG01106.hp1 HG01884.hp2 HG02145.hp1 others(27): Show HG01106.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02486.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-167-36593T>C c.-167-36593T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110408560
chrX:110409119	A A	C C	1	a0001c0002t0002g0058 a0001c0002t0002g0058	1	HG01258.hp1 HG01258.hp1	intron_variant	MODIFIER	c.-167-36034A>C c.-167-36034A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110409119
chrX:110409154	T T	C C	2	a0002c0003t0002g0125 a0010c0009t0002g0011 a0002c0003t0002g0125 a0010c0009t0002g0011	2	HG02647.hp1 HG02809.hp2 HG02647.hp1 HG02809.hp2	intron_variant	MODIFIER	c.-167-35999T>C c.-167-35999T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110409154
chrX:110409158	C C	T T	1	a0001c0002t0002g0142 a0001c0002t0002g0142	1	HG02622.hp1 HG02622.hp1	intron_variant	MODIFIER	c.-167-35995C>T c.-167-35995C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110409158
chrX:110409172	C C	G G	2	a0001c0001t0001g0105 a0001c0002t0002g0004 a0001c0001t0001g0105 a0001c0002t0002g0004	3	HG02895.hp1 HG02897.hp2 homoSapiens_chm13v2.hp1 HG02895.hp1 HG02897.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-167-35981C>G c.-167-35981C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110409172
chrX:110409187	G G	T T	1	a0001c0001t0001g0089 a0001c0001t0001g0089	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.-167-35966G>T c.-167-35966G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110409187
chrX:110409646	G G	GT GT	23	a0001c0002t0002g0012 a0001c0002t0002g0124 a0001c0002t0002g0129 others(20): Show a0001c0002t0002g0012 a0001c0002t0002g0124 a0001c0002t0002g0129 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0005g0133 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0125 a0002c0003t0002g0154 a0003c0005t0002g0097 a0003c0005t0002g0138 a0010c0009t0002g0011	23	HG01106.hp1 HG01243.hp1 HG02145.hp1 others(20): Show HG01106.hp1 HG01243.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp2 HG03041.hp1 HG03098.hp1 HG03130.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20300.hp2 NA21309.hp1	intron_variant	MODIFIER	c.-167-35495dupT c.-167-35495dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110409646
chrX:110410129	G G	A A	1	a0001c0002t0002g0029 a0001c0002t0002g0029	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.-167-35024G>A c.-167-35024G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110410129
chrX:110410146	G G	A A	2	a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0059 a0001c0001t0001g0060	2	NA18971.hp1 NA18988.hp1 NA18971.hp1 NA18988.hp1	intron_variant	MODIFIER	c.-167-35007G>A c.-167-35007G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110410146
chrX:110410410	G G	A A	25	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0124 others(22): Show a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0124 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	26	HG01106.hp1 HG01243.hp1 HG02145.hp1 others(23): Show HG01106.hp1 HG01243.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20300.hp2 NA21309.hp1	intron_variant	MODIFIER	c.-167-34743G>A c.-167-34743G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110410410
chrX:110410431	C C	T T	1	a0001c0002t0002g0004 a0001c0002t0002g0004	2	HG02895.hp1 HG02897.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-167-34722C>T c.-167-34722C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110410431
chrX:110410581	C C	T T	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-167-34572C>T c.-167-34572C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110410581
chrX:110411026	G G	C C	3	a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	3	HG02622.hp2 HG02897.hp1 HG03209.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-167-34127G>C c.-167-34127G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110411026
chrX:110411261	C C	T T	2	a0002c0003t0002g0125 a0010c0009t0002g0011 a0002c0003t0002g0125 a0010c0009t0002g0011	2	HG02647.hp1 HG02809.hp2 HG02647.hp1 HG02809.hp2	intron_variant	MODIFIER	c.-167-33892C>T c.-167-33892C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110411261
chrX:110411366	T T	C C	1	a0001c0001t0001g0094 a0001c0001t0001g0094	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.-167-33787T>C c.-167-33787T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110411366
chrX:110411753	A A	G G	3	a0001c0001t0001g0020 a0001c0001t0001g0025 a0001c0001t0001g0042 a0001c0001t0001g0020 a0001c0001t0001g0025 a0001c0001t0001g0042	3	HG02027.hp1 HG02074.hp1 HG02132.hp1 HG02027.hp1 HG02074.hp1 HG02132.hp1	intron_variant	MODIFIER	c.-167-33400A>G c.-167-33400A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110411753
chrX:110411975	A A	G G	7	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(4): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0003c0005t0002g0097	7	HG01106.hp1 HG02145.hp1 HG02886.hp2 others(4): Show HG01106.hp1 HG02145.hp1 HG02886.hp2 HG03041.hp1 HG03225.hp1 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-33178A>G c.-167-33178A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110411975
chrX:110412502	G G	A A	2	a0002c0003t0002g0125 a0010c0009t0002g0011 a0002c0003t0002g0125 a0010c0009t0002g0011	2	HG02647.hp1 HG02809.hp2 HG02647.hp1 HG02809.hp2	intron_variant	MODIFIER	c.-167-32651G>A c.-167-32651G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110412502
chrX:110412918	A A	T T	7	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(4): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0003c0005t0002g0097	7	HG01106.hp1 HG02145.hp1 HG02886.hp2 others(4): Show HG01106.hp1 HG02145.hp1 HG02886.hp2 HG03041.hp1 HG03225.hp1 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-32235A>T c.-167-32235A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110412918
chrX:110412970	A A	AG AG	7	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(4): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0003c0005t0002g0097	7	HG01106.hp1 HG02145.hp1 HG02886.hp2 others(4): Show HG01106.hp1 HG02145.hp1 HG02886.hp2 HG03041.hp1 HG03225.hp1 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-32180dupG c.-167-32180dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110412970
chrX:110413124	T T	C C	25	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0124 others(22): Show a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0124 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	26	HG01106.hp1 HG01243.hp1 HG02145.hp1 others(23): Show HG01106.hp1 HG01243.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20300.hp2 NA21309.hp1	intron_variant	MODIFIER	c.-167-32029T>C c.-167-32029T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110413124
chrX:110413294	C C	T T	4	a0001c0002t0002g0004 a0002c0003t0002g0157 a0002c0003t0002g0158 others(1): Show a0001c0002t0002g0004 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	5	HG02622.hp2 HG02895.hp1 HG02897.hp1 others(2): Show HG02622.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03209.hp1	intron_variant	MODIFIER	c.-167-31859C>T c.-167-31859C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110413294
chrX:110413447	CCTT CCTT	C C	2	a0001c0001t0001g0031 a0001c0001t0001g0052 a0001c0001t0001g0031 a0001c0001t0001g0052	2	NA18970.hp1 NA19060.hp1 NA18970.hp1 NA19060.hp1	intron_variant	MODIFIER	c.-167-31703_-167-31 others(9): Show c.-167-31703_-167-31701delTCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110413447
chrX:110413514	A A	AC AC	4	a0001c0001t0001g0082 a0001c0002t0002g0148 a0001c0002t0002g0149 others(1): Show a0001c0001t0001g0082 a0001c0002t0002g0148 a0001c0002t0002g0149 a0005c0007t0005g0007	4	HG01106.hp1 HG02055.hp1 HG03942.hp1 others(1): Show HG01106.hp1 HG02055.hp1 HG03942.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-31630dupC c.-167-31630dupC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110413514
chrX:110414105	G G	T T	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-31048G>T c.-167-31048G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110414105
chrX:110414469	C C	T T	7	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(4): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0003c0005t0002g0097	7	HG01106.hp1 HG02145.hp1 HG02886.hp2 others(4): Show HG01106.hp1 HG02145.hp1 HG02886.hp2 HG03041.hp1 HG03225.hp1 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-30684C>T c.-167-30684C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110414469
chrX:110414538	T T	C C	1	a0001c0002t0002g0130 a0001c0002t0002g0130	1	HG02451.hp2 HG02451.hp2	intron_variant	MODIFIER	c.-167-30615T>C c.-167-30615T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110414538
chrX:110414704	C C	T T	7	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(4): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0003c0005t0002g0097	7	HG01106.hp1 HG02145.hp1 HG02886.hp2 others(4): Show HG01106.hp1 HG02145.hp1 HG02886.hp2 HG03041.hp1 HG03225.hp1 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-30449C>T c.-167-30449C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110414704
chrX:110415244	G G	T T	7	a0001c0001t0001g0002 a0001c0001t0001g0036 a0001c0001t0001g0074 others(4): Show a0001c0001t0001g0002 a0001c0001t0001g0036 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0008g0073 a0006c0012t0001g0027	8	HG01261.hp1 HG01943.hp1 HG01952.hp1 others(5): Show HG01261.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 NA18612.hp1 NA18948.hp1 NA18989.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-29909G>T c.-167-29909G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110415244
chrX:110415259	G G	A A	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-29894G>A c.-167-29894G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110415259
chrX:110415416	T T	C C	1	a0001c0002t0006g0132 a0001c0002t0006g0132	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.-167-29737T>C c.-167-29737T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110415416
chrX:110415525	C C	T T	1	a0001c0001t0003g0159 a0001c0001t0003g0159	1	NA18522.hp1 NA18522.hp1	intron_variant	MODIFIER	c.-167-29628C>T c.-167-29628C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110415525
chrX:110415535	T T	C C	1	a0003c0005t0002g0015 a0003c0005t0002g0015	1	HG03195.hp1 HG03195.hp1	intron_variant	MODIFIER	c.-167-29618T>C c.-167-29618T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110415535
chrX:110415791	C C	A A	1	a0001c0002t0002g0004 a0001c0002t0002g0004	2	HG02895.hp1 HG02897.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-167-29362C>A c.-167-29362C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110415791
chrX:110416006	C C	CA CA	21	a0001c0001t0001g0025 a0001c0001t0001g0035 a0001c0001t0001g0043 others(18): Show a0001c0001t0001g0025 a0001c0001t0001g0035 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0057 a0001c0001t0001g0061 a0001c0001t0001g0093 a0001c0001t0001g0101 a0001c0001t0001g0135 a0001c0001t0001g0146 a0001c0001t0003g0083 a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0154 a0003c0005t0002g0097	22	HG01243.hp1 HG02040.hp1 HG02132.hp1 others(19): Show HG01243.hp1 HG02040.hp1 HG02132.hp1 HG02145.hp1 HG02738.hp1 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp2 HG03041.hp1 HG03195.hp2 HG03225.hp1 HG04228.hp1 HG06807.hp2 NA18983.hp1 NA18985.hp1 NA19007.hp1 NA19009.hp1 NA19056.hp1 NA19085.hp1 NA20300.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-167-29131dupA c.-167-29131dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110416006
chrX:110416006	CA CA	C C	12	a0001c0001t0001g0095 a0001c0002t0002g0058 a0001c0002t0002g0072 others(9): Show a0001c0001t0001g0095 a0001c0002t0002g0058 a0001c0002t0002g0072 a0001c0002t0002g0124 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0153 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	12	HG01258.hp1 HG01515.hp1 HG02129.hp1 others(9): Show HG01258.hp1 HG01515.hp1 HG02129.hp1 HG02258.hp1 HG02622.hp1 HG02622.hp2 HG02717.hp1 HG02897.hp1 HG03130.hp1 HG03209.hp1 NA18906.hp2 NA21309.hp1	intron_variant	MODIFIER	c.-167-29131delA c.-167-29131delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110416006
chrX:110416006	CAAA CAAA	C C	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-29133_-167-29 others(9): Show c.-167-29133_-167-29131delAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110416006
chrX:110416348	G G	A A	1	a0005c0007t0005g0007 a0005c0007t0005g0007	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.-167-28805G>A c.-167-28805G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110416348
chrX:110416422	C C	T T	3	a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0088 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0088	3	NA18944.hp1 NA18952.hp1 NA18965.hp1 NA18944.hp1 NA18952.hp1 NA18965.hp1	intron_variant	MODIFIER	c.-167-28731C>T c.-167-28731C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110416422
chrX:110416809	G G	T T	7	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(4): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0003c0005t0002g0097	7	HG01106.hp1 HG02145.hp1 HG02886.hp2 others(4): Show HG01106.hp1 HG02145.hp1 HG02886.hp2 HG03041.hp1 HG03225.hp1 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-28344G>T c.-167-28344G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110416809
chrX:110416973	G G	T T	7	a0001c0001t0001g0002 a0001c0001t0001g0036 a0001c0001t0001g0074 others(4): Show a0001c0001t0001g0002 a0001c0001t0001g0036 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0008g0073 a0006c0012t0001g0027	8	HG01261.hp1 HG01943.hp1 HG01952.hp1 others(5): Show HG01261.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 NA18612.hp1 NA18948.hp1 NA18989.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-28180G>T c.-167-28180G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110416973
chrX:110417047	C C	T T	1	a0001c0002t0010g0147 a0001c0002t0010g0147	1	NA21309.hp2 NA21309.hp2	intron_variant	MODIFIER	c.-167-28106C>T c.-167-28106C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110417047
chrX:110417465	C C	T T	19	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0148 others(16): Show a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	20	HG01106.hp1 HG01243.hp1 HG02145.hp1 others(17): Show HG01106.hp1 HG01243.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA19043.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-167-27688C>T c.-167-27688C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110417465
chrX:110417480	A A	AT AT	2	a0001c0001t0001g0046 a0001c0001t0001g0111 a0001c0001t0001g0046 a0001c0001t0001g0111	2	NA18985.hp1 NA18995.hp1 NA18985.hp1 NA18995.hp1	intron_variant	MODIFIER	c.-167-27663dupT c.-167-27663dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110417480
chrX:110417480	AT AT	A A	10	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(7): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0007c0008t0002g0150	10	HG01106.hp1 HG02145.hp1 HG02622.hp2 others(7): Show HG01106.hp1 HG02145.hp1 HG02622.hp2 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-27663delT c.-167-27663delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110417480
chrX:110417490	T T	C C	3	a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131	3	HG01243.hp1 HG02818.hp2 NA20300.hp2 HG01243.hp1 HG02818.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-167-27663T>C c.-167-27663T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110417490
chrX:110417732	C C	CA CA	1	a0001c0001t0001g0108 a0001c0001t0001g0108	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.-167-27415dupA c.-167-27415dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110417732
chrX:110417828	T T	C C	7	a0001c0001t0001g0002 a0001c0001t0001g0036 a0001c0001t0001g0074 others(4): Show a0001c0001t0001g0002 a0001c0001t0001g0036 a0001c0001t0001g0074 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0008g0073 a0006c0012t0001g0027	8	HG01261.hp1 HG01943.hp1 HG01952.hp1 others(5): Show HG01261.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 NA18612.hp1 NA18948.hp1 NA18989.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-27325T>C c.-167-27325T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110417828
chrX:110417873	GA GA	G G	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-167-27278delA c.-167-27278delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110417873
chrX:110417908	C C	T T	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.-167-27245C>T c.-167-27245C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110417908
chrX:110418254	A A	AT AT	1	a0001c0001t0001g0108 a0001c0001t0001g0108	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.-167-26892dupT c.-167-26892dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110418254
chrX:110418396	C C	T T	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-26757C>T c.-167-26757C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110418396
chrX:110418465	A A	G G	1	a0003c0005t0002g0138 a0003c0005t0002g0138	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.-167-26688A>G c.-167-26688A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110418465
chrX:110418507	G G	GT GT	1	a0001c0001t0001g0108 a0001c0001t0001g0108	1	NA18953.hp1 NA18953.hp1	intron_variant	MODIFIER	c.-167-26641dupT c.-167-26641dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110418507
chrX:110418649	T T	C C	2	a0001c0002t0002g0130 a0001c0002t0006g0132 a0001c0002t0002g0130 a0001c0002t0006g0132	2	HG02451.hp2 HG02630.hp1 HG02451.hp2 HG02630.hp1	intron_variant	MODIFIER	c.-167-26504T>C c.-167-26504T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110418649
chrX:110418773	C C	T T	3	a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150 a0002c0003t0002g0157 a0002c0003t0002g0158 a0007c0008t0002g0150	3	HG02622.hp2 HG02897.hp1 HG03209.hp1 HG02622.hp2 HG02897.hp1 HG03209.hp1	intron_variant	MODIFIER	c.-167-26380C>T c.-167-26380C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110418773
chrX:110418886	G G	A A	7	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(4): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0003c0005t0002g0097	7	HG01106.hp1 HG02145.hp1 HG02886.hp2 others(4): Show HG01106.hp1 HG02145.hp1 HG02886.hp2 HG03041.hp1 HG03225.hp1 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-26267G>A c.-167-26267G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110418886
chrX:110419057	G G	A A	2	a0001c0002t0002g0129 a0001c0002t0005g0133 a0001c0002t0002g0129 a0001c0002t0005g0133	2	HG02818.hp1 HG03098.hp1 HG02818.hp1 HG03098.hp1	intron_variant	MODIFIER	c.-167-26096G>A c.-167-26096G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110419057
chrX:110420032	G G	A A	4	a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0136 others(1): Show a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0136 a0001c0002t0002g0137	5	HG01884.hp2 HG02451.hp1 HG02486.hp1 others(2): Show HG01884.hp2 HG02451.hp1 HG02486.hp1 HG03139.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-167-25121G>A c.-167-25121G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110420032
chrX:110420295	G G	C C	8	a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 others(5): Show a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0007c0008t0002g0150	8	HG02145.hp1 HG02622.hp2 HG02886.hp2 others(5): Show HG02145.hp1 HG02622.hp2 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-167-24858G>C c.-167-24858G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110420295
chrX:110420323	C C	T T	1	a0001c0001t0003g0085 a0001c0001t0003g0085	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.-167-24830C>T c.-167-24830C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110420323
chrX:110420332	A A	C C	2	a0002c0003t0002g0154 a0003c0005t0002g0097 a0002c0003t0002g0154 a0003c0005t0002g0097	2	HG02886.hp2 HG03041.hp1 HG02886.hp2 HG03041.hp1	intron_variant	MODIFIER	c.-167-24821A>C c.-167-24821A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110420332
chrX:110420730	A A	G G	1	a0001c0002t0002g0086 a0001c0002t0002g0086	1	NA19063.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-167-24423A>G c.-167-24423A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110420730
chrX:110421153	A A	T T	10	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(7): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0007c0008t0002g0150	10	HG01106.hp1 HG02145.hp1 HG02622.hp2 others(7): Show HG01106.hp1 HG02145.hp1 HG02622.hp2 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03209.hp1 HG03225.hp1 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-24000A>T c.-167-24000A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110421153
chrX:110421376	G G	C C	1	a0001c0001t0001g0049 a0001c0001t0001g0049	1	NA18952.hp1 NA18952.hp1	intron_variant	MODIFIER	c.-167-23777G>C c.-167-23777G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110421376
chrX:110421549	C C	T T	2	a0002c0003t0002g0125 a0010c0009t0002g0011 a0002c0003t0002g0125 a0010c0009t0002g0011	2	HG02647.hp1 HG02809.hp2 HG02647.hp1 HG02809.hp2	intron_variant	MODIFIER	c.-167-23604C>T c.-167-23604C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110421549
chrX:110421671	C C	G G	9	a0001c0002t0002g0004 a0001c0002t0002g0152 a0001c0002t0002g0153 others(6): Show a0001c0002t0002g0004 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0125 a0003c0005t0002g0138 a0010c0009t0002g0011	10	HG01243.hp1 HG02258.hp1 HG02630.hp2 others(7): Show HG01243.hp1 HG02258.hp1 HG02630.hp2 HG02647.hp1 HG02809.hp2 HG02818.hp2 HG02895.hp1 HG02897.hp2 HG03486.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-167-23482C>G c.-167-23482C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110421671
chrX:110422163	C C	CT CT	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-22985dupT c.-167-22985dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110422163
chrX:110422447	C C	T T	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-22706C>T c.-167-22706C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110422447
chrX:110422661	TA TA	T T	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-22487delA c.-167-22487delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110422661
chrX:110422719	A A	AG AG	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-22434_-167-22 others(7): Show c.-167-22434_-167-22433insG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110422719
chrX:110422803	CA CA	C C	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-22347delA c.-167-22347delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110422803
chrX:110422824	A A	T T	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-22329A>T c.-167-22329A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110422824
chrX:110422886	A A	AG AG	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-22265dupG c.-167-22265dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110422886
chrX:110423008	T T	C C	1	a0001c0001t0001g0115 a0001c0001t0001g0115	1	HG02056.hp1 HG02056.hp1	intron_variant	MODIFIER	c.-167-22145T>C c.-167-22145T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110423008
chrX:110423024	C C	T T	1	a0003c0005t0002g0138 a0003c0005t0002g0138	1	HG02630.hp2 HG02630.hp2	intron_variant	MODIFIER	c.-167-22129C>T c.-167-22129C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110423024
chrX:110423048	C C	CG CG	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-22105_-167-22 others(7): Show c.-167-22105_-167-22104insG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110423048
chrX:110423155	C C	CT CT	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21997dupT c.-167-21997dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423155
chrX:110423168	A A	C C	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21985A>C c.-167-21985A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110423168
chrX:110423288	A A	AT AT	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21863dupT c.-167-21863dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423288
chrX:110423299	AC AC	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21852delC c.-167-21852delC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423299
chrX:110423328	CA CA	C C	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-21812delA c.-167-21812delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423328
chrX:110423328	CAA CAA	C C	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21813_-167-21 others(8): Show c.-167-21813_-167-21812delAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423328
chrX:110423336	AAAAAAG AAAAAAG	A A	1	a0001c0001t0001g0048 a0001c0001t0001g0048	1	NA19091.hp1 NA19091.hp1	intron_variant	MODIFIER	c.-167-21801_-167-21 others(12): Show c.-167-21801_-167-21796delAAGAAA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423336
chrX:110423374	AAGAAGG AAGAAGG	A A	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-21763_-167-21 others(12): Show c.-167-21763_-167-21758delAGGAGA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423374
chrX:110423427	T T	TA TA	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21726_-167-21 others(7): Show c.-167-21726_-167-21725insA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110423427
chrX:110423537	G G	GC GC	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21614dupC c.-167-21614dupC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423537
chrX:110423568	G G	GT GT	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21580dupT c.-167-21580dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423568
chrX:110423575	T T	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21578T>A c.-167-21578T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110423575
chrX:110423662	T T	TA TA	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21490dupA c.-167-21490dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423662
chrX:110423685	C C	CT CT	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21464dupT c.-167-21464dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423685
chrX:110423948	AT AT	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21201delT c.-167-21201delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110423948
chrX:110424002	T T	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21151T>A c.-167-21151T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110424002
chrX:110424037	A A	C C	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-21116A>C c.-167-21116A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110424037
chrX:110424040	TA TA	T T	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-21112delA c.-167-21112delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110424040
chrX:110424185	GT GT	G G	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-20965delT c.-167-20965delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110424185
chrX:110424215	TC TC	T T	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-20936delC c.-167-20936delC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110424215
chrX:110424258	A A	T T	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-20895A>T c.-167-20895A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110424258
chrX:110424289	CT CT	C C	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-20859delT c.-167-20859delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110424289
chrX:110424311	CTG CTG	C C	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-20840_-167-20 others(8): Show c.-167-20840_-167-20839delGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110424311
chrX:110424525	A A	AG AG	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-20626dupG c.-167-20626dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110424525
chrX:110424664	T T	TA TA	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-20488dupA c.-167-20488dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110424664
chrX:110424788	T T	G G	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-20365T>G c.-167-20365T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110424788
chrX:110424997	A A	AC AC	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-20155dupC c.-167-20155dupC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110424997
chrX:110425155	T T	A A	9	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(6): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097	9	HG01106.hp1 HG02145.hp1 HG02622.hp2 others(6): Show HG01106.hp1 HG02145.hp1 HG02622.hp2 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03225.hp1 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-19998T>A c.-167-19998T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110425155
chrX:110425179	AGG AGG	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-19973_-167-19 others(8): Show c.-167-19973_-167-19972delGG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110425179
chrX:110425348	C C	CA CA	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-19805_-167-19 others(7): Show c.-167-19805_-167-19804insA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110425348
chrX:110425351	C C	T T	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-19802C>T c.-167-19802C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110425351
chrX:110425707	C C	T T	2	a0002c0003t0002g0154 a0003c0005t0002g0097 a0002c0003t0002g0154 a0003c0005t0002g0097	2	HG02886.hp2 HG03041.hp1 HG02886.hp2 HG03041.hp1	intron_variant	MODIFIER	c.-167-19446C>T c.-167-19446C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110425707
chrX:110425980	G G	GCA GCA	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-19156_-167-19 others(8): Show c.-167-19156_-167-19155dupCA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110425980
chrX:110425980	GCA GCA	G G	7	a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 others(4): Show a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097	7	HG02145.hp1 HG02622.hp2 HG02886.hp2 others(4): Show HG02145.hp1 HG02622.hp2 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03225.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-167-19156_-167-19 others(8): Show c.-167-19156_-167-19155delCA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110425980
chrX:110426002	G G	A A	3	a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0002g0012 a0001c0002t0002g0155 a0001c0002t0002g0156	3	HG02145.hp1 HG03225.hp1 HG06807.hp2 HG02145.hp1 HG03225.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-167-19151G>A c.-167-19151G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110426002
chrX:110426015	C C	CA CA	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-19137dupA c.-167-19137dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110426015
chrX:110426278	T T	C C	4	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0159 others(1): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0159 a0002c0003t0002g0084	4	HG02572.hp1 HG02965.hp1 HG03195.hp2 others(1): Show HG02572.hp1 HG02965.hp1 HG03195.hp2 NA18522.hp1	intron_variant	MODIFIER	c.-167-18875T>C c.-167-18875T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110426278
chrX:110426344	T T	TG TG	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-18807dupG c.-167-18807dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110426344
chrX:110426430	T T	A A	1	a0001c0001t0001g0105 a0001c0001t0001g0105	1	homoSapiens_chm13v2.hp1 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-167-18723T>A c.-167-18723T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110426430
chrX:110426440	C C	T T	1	a0001c0002t0002g0004 a0001c0002t0002g0004	2	HG02895.hp1 HG02897.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-167-18713C>T c.-167-18713C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110426440
chrX:110426578	CG CG	C C	1	a0002c0003t0002g0014 a0002c0003t0002g0014	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.-167-18574delG c.-167-18574delG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110426578
chrX:110426587	A A	AT AT	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-18561dupT c.-167-18561dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110426587
chrX:110426595	G G	A A	12	a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 others(9): Show a0001c0002t0002g0012 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138	12	HG01106.hp1 HG02145.hp1 HG02258.hp1 others(9): Show HG01106.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp2 HG02630.hp2 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA19043.hp1	intron_variant	MODIFIER	c.-167-18558G>A c.-167-18558G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110426595
chrX:110426601	G G	C C	25	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0124 others(22): Show a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0124 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	26	HG01106.hp1 HG01243.hp1 HG02145.hp1 others(23): Show HG01106.hp1 HG01243.hp1 HG02145.hp1 HG02258.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03130.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp2 HG06807.hp2 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA20300.hp2 NA21309.hp1	intron_variant	MODIFIER	c.-167-18552G>C c.-167-18552G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110426601
chrX:110427313	A A	G G	2	a0002c0003t0002g0125 a0010c0009t0002g0011 a0002c0003t0002g0125 a0010c0009t0002g0011	2	HG02647.hp1 HG02809.hp2 HG02647.hp1 HG02809.hp2	intron_variant	MODIFIER	c.-167-17840A>G c.-167-17840A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110427313
chrX:110427649	T T	A A	4	a0001c0002t0002g0122 a0003c0005t0002g0015 a0003c0005t0002g0097 others(1): Show a0001c0002t0002g0122 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138	4	HG02630.hp2 HG02886.hp2 HG03195.hp1 others(1): Show HG02630.hp2 HG02886.hp2 HG03195.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-167-17504T>A c.-167-17504T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110427649
chrX:110427671	A A	G G	1	a0002c0003t0002g0014 a0002c0003t0002g0014	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.-167-17482A>G c.-167-17482A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110427671
chrX:110427756	A A	AC AC	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-17392dupC c.-167-17392dupC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110427756
chrX:110427792	A A	ATT ATT	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-17360_-167-17 others(8): Show c.-167-17360_-167-17359dupTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110427792
chrX:110427986	G G	C C	2	a0001c0001t0001g0038 a0001c0001t0001g0062 a0001c0001t0001g0038 a0001c0001t0001g0062	2	NA18994.hp1 NA19004.hp1 NA18994.hp1 NA19004.hp1	intron_variant	MODIFIER	c.-167-17167G>C c.-167-17167G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110427986
chrX:110428156	T T	C C	28	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 others(25): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0114 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0007c0008t0002g0150	29	HG01109.hp1 HG01884.hp2 HG02258.hp1 others(26): Show HG01109.hp1 HG01884.hp2 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp1 HG02717.hp1 HG02809.hp1 HG02818.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-16997T>C c.-167-16997T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110428156
chrX:110428261	G G	A A	1	a0001c0002t0002g0122 a0001c0002t0002g0122	1	HG03486.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-167-16892G>A c.-167-16892G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110428261
chrX:110428379	G G	C C	1	a0001c0002t0002g0058 a0001c0002t0002g0058	1	HG01258.hp1 HG01258.hp1	intron_variant	MODIFIER	c.-167-16774G>C c.-167-16774G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110428379
chrX:110428716	G G	C C	4	a0001c0002t0002g0122 a0003c0005t0002g0015 a0003c0005t0002g0097 others(1): Show a0001c0002t0002g0122 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138	4	HG02630.hp2 HG02886.hp2 HG03195.hp1 others(1): Show HG02630.hp2 HG02886.hp2 HG03195.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-167-16437G>C c.-167-16437G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110428716
chrX:110429243	C C	CT CT	8	a0001c0001t0001g0013 a0001c0002t0002g0122 a0002c0003t0002g0154 others(5): Show a0001c0001t0001g0013 a0001c0002t0002g0122 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138	8	HG02622.hp2 HG02630.hp2 HG02886.hp2 others(5): Show HG02622.hp2 HG02630.hp2 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03195.hp1 HG03486.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-167-15900dupT c.-167-15900dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110429243
chrX:110429410	C C	T T	2	a0003c0005t0002g0015 a0003c0005t0002g0138 a0003c0005t0002g0015 a0003c0005t0002g0138	2	HG02630.hp2 HG03195.hp1 HG02630.hp2 HG03195.hp1	intron_variant	MODIFIER	c.-167-15743C>T c.-167-15743C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429410
chrX:110429458	G G	GT GT	10	a0001c0001t0001g0022 a0001c0001t0001g0046 a0001c0001t0001g0060 others(7): Show a0001c0001t0001g0022 a0001c0001t0001g0046 a0001c0001t0001g0060 a0001c0001t0001g0070 a0001c0001t0001g0117 a0001c0001t0001g0119 a0001c0001t0008g0073 a0001c0001t0011g0033 a0004c0006t0001g0045 a0006c0012t0001g0027	10	HG01952.hp1 HG02602.hp1 NA18940.hp1 others(7): Show HG01952.hp1 HG02602.hp1 NA18940.hp1 NA18985.hp1 NA18988.hp1 NA18989.hp1 NA19000.hp1 NA19062.hp1 NA19083.hp1 NA19086.hp1	intron_variant	MODIFIER	c.-167-15680dupT c.-167-15680dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110429458
chrX:110429458	GT GT	G G	16	a0001c0001t0001g0035 a0001c0001t0001g0044 a0001c0001t0001g0063 others(13): Show a0001c0001t0001g0035 a0001c0001t0001g0044 a0001c0001t0001g0063 a0001c0001t0001g0088 a0001c0001t0001g0100 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0004t0002g0009 a0002c0003t0002g0014 a0002c0003t0002g0084 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0010c0009t0002g0011	16	HG01106.hp1 HG02622.hp2 HG02647.hp1 others(13): Show HG01106.hp1 HG02622.hp2 HG02647.hp1 HG02809.hp2 HG02818.hp2 HG02886.hp2 HG02897.hp1 HG02965.hp1 HG03041.hp1 NA18965.hp1 NA18983.hp1 NA19030.hp2 NA19043.hp1 NA19056.hp1 NA19079.hp1 NA19088.hp1	intron_variant	MODIFIER	c.-167-15680delT c.-167-15680delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110429458
chrX:110429458	GTT GTT	G G	28	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 others(25): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0114 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0007c0008t0002g0150	29	HG01109.hp1 HG01884.hp2 HG02258.hp1 others(26): Show HG01109.hp1 HG01884.hp2 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp1 HG02717.hp1 HG02809.hp1 HG02818.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-15681_-167-15 others(8): Show c.-167-15681_-167-15680delTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110429458
chrX:110429469	T T	G G	2	a0003c0005t0002g0015 a0003c0005t0002g0138 a0003c0005t0002g0015 a0003c0005t0002g0138	2	HG02630.hp2 HG03195.hp1 HG02630.hp2 HG03195.hp1	intron_variant	MODIFIER	c.-167-15684T>G c.-167-15684T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429469
chrX:110429472	T T	G G	2	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0004 a0001c0002t0002g0012	3	HG02895.hp1 HG02897.hp2 HG06807.hp2 HG02895.hp1 HG02897.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-167-15681T>G c.-167-15681T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429472
chrX:110429472	TTG TTG	T T	2	a0001c0004t0002g0010 a0001c0004t0002g0131 a0001c0004t0002g0010 a0001c0004t0002g0131	2	HG01243.hp1 NA20300.hp2 HG01243.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-167-15679_-167-15 others(8): Show c.-167-15679_-167-15678delGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110429472
chrX:110429473	T T	G G	2	a0001c0002t0002g0156 a0005c0007t0005g0007 a0001c0002t0002g0156 a0005c0007t0005g0007	2	HG02055.hp1 HG02145.hp1 HG02055.hp1 HG02145.hp1	intron_variant	MODIFIER	c.-167-15680T>G c.-167-15680T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429473
chrX:110429473	TG TG	T T	2	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0004 a0001c0002t0002g0012	3	HG02895.hp1 HG02897.hp2 HG06807.hp2 HG02895.hp1 HG02897.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-167-15679delG c.-167-15679delG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429473
chrX:110429474	G G	T T	2	a0001c0002t0002g0156 a0005c0007t0005g0007 a0001c0002t0002g0156 a0005c0007t0005g0007	2	HG02055.hp1 HG02145.hp1 HG02055.hp1 HG02145.hp1	intron_variant	MODIFIER	c.-167-15679G>T c.-167-15679G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429474
chrX:110429475	T T	G G	2	a0001c0004t0002g0010 a0001c0004t0002g0131 a0001c0004t0002g0010 a0001c0004t0002g0131	2	HG01243.hp1 NA20300.hp2 HG01243.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-167-15678T>G c.-167-15678T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429475
chrX:110429478	TG TG	T T	47	a0001c0001t0001g0101 a0001c0001t0003g0083 a0001c0001t0003g0085 others(44): Show a0001c0001t0001g0101 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0004g0034 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0001c0004t0002g0009 a0002c0003t0002g0014 a0002c0003t0002g0084 a0002c0003t0002g0125 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0010c0009t0002g0011	48	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(45): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01258.hp1 HG01515.hp1 HG01884.hp2 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02965.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03225.hp1 HG03471.hp1 HG03486.hp2 HG03579.hp1 HG03688.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19063.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-15674delG c.-167-15674delG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429478
chrX:110429479	G G	GT GT	5	a0001c0001t0001g0013 a0001c0001t0001g0019 a0001c0001t0001g0046 others(2): Show a0001c0001t0001g0013 a0001c0001t0001g0019 a0001c0001t0001g0046 a0001c0001t0001g0074 a0001c0001t0001g0146	5	HG02738.hp1 NA18945.hp1 NA18985.hp1 others(2): Show HG02738.hp1 NA18945.hp1 NA18985.hp1 NA19006.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-15667dupT c.-167-15667dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110429479
chrX:110429479	G G	T T	2	a0001c0002t0002g0122 a0007c0008t0002g0150 a0001c0002t0002g0122 a0007c0008t0002g0150	2	HG03209.hp1 HG03486.hp1 HG03209.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-167-15674G>T c.-167-15674G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429479
chrX:110429481	T T	G G	9	a0001c0001t0001g0101 a0001c0002t0002g0026 a0001c0002t0002g0053 others(6): Show a0001c0001t0001g0101 a0001c0002t0002g0026 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0123 a0001c0002t0002g0151	9	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(6): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01167.hp1 HG01258.hp1 HG01515.hp1 HG03688.hp1 HG04228.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-167-15672T>G c.-167-15672T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429481
chrX:110429485	TTG TTG	T T	4	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0156 others(1): Show a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0156 a0005c0007t0005g0007	5	HG02055.hp1 HG02145.hp1 HG02895.hp1 others(2): Show HG02055.hp1 HG02145.hp1 HG02895.hp1 HG02897.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-167-15667_-167-15 others(8): Show c.-167-15667_-167-15666delTG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429485
chrX:110429486	TG TG	T T	3	a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158	3	HG02622.hp2 HG02897.hp1 HG03041.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1	intron_variant	MODIFIER	c.-167-15665delG c.-167-15665delG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110429486
chrX:110429487	G G	T T	147	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(144): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0001t0007g0104 a0001c0001t0008g0073 a0001c0001t0011g0033 a0001c0002t0002g0006 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0004g0034 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0009g0008 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0001c0013t0001g0106 a0002c0003t0002g0014 a0002c0003t0002g0084 a0002c0003t0002g0125 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0004c0006t0001g0045 a0004c0006t0001g0079 a0006c0012t0001g0027 a0007c0008t0002g0150 a0008c0010t0001g0092 a0009c0011t0001g0068 a0010c0009t0002g0011	152	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(149): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02258.hp1 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18948.hp1 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-167-15666G>T c.-167-15666G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429487
chrX:110429488	G G	T T	4	a0001c0001t0001g0013 a0001c0001t0001g0019 a0001c0001t0001g0046 others(1): Show a0001c0001t0001g0013 a0001c0001t0001g0019 a0001c0001t0001g0046 a0001c0001t0001g0146	4	HG02738.hp1 NA18945.hp1 NA18985.hp1 others(1): Show HG02738.hp1 NA18945.hp1 NA18985.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-167-15665G>T c.-167-15665G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429488
chrX:110429552	G G	A A	1	a0001c0001t0001g0019 a0001c0001t0001g0019	1	NA18945.hp1 NA18945.hp1	intron_variant	MODIFIER	c.-167-15601G>A c.-167-15601G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429552
chrX:110429564	C C	T T	1	a0001c0001t0001g0069 a0001c0001t0001g0069	1	HG01074.hp1 HG01074.hp1	intron_variant	MODIFIER	c.-167-15589C>T c.-167-15589C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429564
chrX:110429668	G G	T T	28	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 others(25): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0114 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0007c0008t0002g0150	29	HG01109.hp1 HG01884.hp2 HG02258.hp1 others(26): Show HG01109.hp1 HG01884.hp2 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp1 HG02717.hp1 HG02809.hp1 HG02818.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-15485G>T c.-167-15485G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429668
chrX:110429730	T T	C C	58	a0001c0001t0001g0101 a0001c0001t0003g0083 a0001c0001t0003g0085 others(55): Show a0001c0001t0001g0101 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0034 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0014 a0002c0003t0002g0084 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0005c0007t0005g0007 a0007c0008t0002g0150 a0010c0009t0002g0011	60	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(57): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01243.hp1 HG01258.hp1 HG01515.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG03688.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19063.hp1 NA20300.hp2 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-15423T>C c.-167-15423T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110429730
chrX:110430225	C C	G G	1	a0001c0002t0004g0120 a0001c0002t0004g0120	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-167-14928C>G c.-167-14928C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110430225
chrX:110430232	G G	A A	3	a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158	3	HG02622.hp2 HG02897.hp1 HG03041.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1	intron_variant	MODIFIER	c.-167-14921G>A c.-167-14921G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110430232
chrX:110430428	A A	C C	1	a0001c0001t0001g0050 a0001c0001t0001g0050	1	NA18944.hp1 NA18944.hp1	intron_variant	MODIFIER	c.-167-14725A>C c.-167-14725A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110430428
chrX:110431000	C C	T T	3	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0004g0034 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0004g0034	3	HG01106.hp1 HG02886.hp1 NA19043.hp1 HG01106.hp1 HG02886.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-167-14153C>T c.-167-14153C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110431000
chrX:110431306	G G	A A	1	a0001c0002t0002g0122 a0001c0002t0002g0122	1	HG03486.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-167-13847G>A c.-167-13847G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110431306
chrX:110431323	C C	CTG CTG	39	a0001c0001t0001g0002 a0001c0001t0001g0016 a0001c0001t0001g0017 others(36): Show a0001c0001t0001g0002 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0021 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0040 a0001c0001t0001g0044 a0001c0001t0001g0056 a0001c0001t0001g0077 a0001c0001t0001g0082 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0101 a0001c0001t0008g0073 a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0026 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0151 a0001c0002t0002g0156 a0002c0003t0002g0084 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0005c0007t0005g0007 a0010c0009t0002g0011	41	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(38): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01069.hp1 HG01167.hp1 HG01258.hp1 HG01261.hp1 HG01515.hp1 HG01928.hp1 HG01943.hp1 HG02055.hp1 HG02135.hp1 HG02145.hp1 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02735.hp1 HG02809.hp2 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03195.hp1 HG03486.hp1 HG03688.hp1 HG03942.hp1 HG04115.hp1 HG04228.hp1 HG06807.hp2 NA18612.hp1 NA18948.hp1 NA18959.hp1 NA18970.hp1 NA18983.hp1 NA18989.hp1 NA18990.hp1 NA19056.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-167-13799_-167-13 others(8): Show c.-167-13799_-167-13798dupTG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110431323
chrX:110431323	C C	CTGTG CTGTG	17	a0001c0001t0001g0041 a0001c0001t0001g0076 a0001c0001t0001g0091 others(14): Show a0001c0001t0001g0041 a0001c0001t0001g0076 a0001c0001t0001g0091 a0001c0001t0001g0095 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0002t0002g0006 a0001c0002t0002g0114 a0001c0002t0002g0128 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0144 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0002c0003t0002g0014	18	HG01884.hp2 HG02015.hp1 HG02129.hp1 others(15): Show HG01884.hp2 HG02015.hp1 HG02129.hp1 HG02630.hp1 HG02809.hp1 HG03041.hp2 HG03098.hp1 HG03139.hp1 HG03579.hp1 HG06807.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18995.hp1 NA19030.hp2 NA19067.hp1 NA19082.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-13801_-167-13 others(10): Show c.-167-13801_-167-13798dupTGTG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110431323
chrX:110431323	C C	CTGTGTG CTGTGTG	16	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 others(13): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0029 a0001c0002t0002g0124 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0141 a0001c0002t0002g0145 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0004g0120 a0007c0008t0002g0150	16	HG01109.hp1 HG02258.hp1 HG02451.hp1 others(13): Show HG01109.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02717.hp1 HG02818.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp2 NA18522.hp1 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-167-13803_-167-13 others(12): Show c.-167-13803_-167-13798dupTGTGTG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110431323
chrX:110431323	C C	CTGTGTGT others(1): Show CTGTGTGTG	2	a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0142 a0001c0002t0002g0143	2	HG02622.hp1 HG03130.hp1 HG02622.hp1 HG03130.hp1	intron_variant	MODIFIER	c.-167-13805_-167-13 others(14): Show c.-167-13805_-167-13798dupTGTGTGTG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110431323
chrX:110431323	CTGTG CTGTG	C C	1	a0001c0001t0001g0071 a0001c0001t0001g0071	1	HG02698.hp1 HG02698.hp1	intron_variant	MODIFIER	c.-167-13801_-167-13 others(10): Show c.-167-13801_-167-13798delTGTG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110431323
chrX:110431354	T T	TG TG	1	a0001c0001t0001g0090 a0001c0001t0001g0090	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-167-13798dupG c.-167-13798dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110431354
chrX:110431415	G G	C C	4	a0001c0002t0002g0122 a0003c0005t0002g0015 a0003c0005t0002g0097 others(1): Show a0001c0002t0002g0122 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138	4	HG02630.hp2 HG02886.hp2 HG03195.hp1 others(1): Show HG02630.hp2 HG02886.hp2 HG03195.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-167-13738G>C c.-167-13738G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110431415
chrX:110431837	A A	C C	1	a0001c0002t0002g0156 a0001c0002t0002g0156	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.-167-13316A>C c.-167-13316A>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110431837
chrX:110432123	A A	AC AC	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-13030_-167-13 others(7): Show c.-167-13030_-167-13029insC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110432123
chrX:110432125	G G	GC GC	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-13028_-167-13 others(7): Show c.-167-13028_-167-13027insC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110432125
chrX:110432300	G G	A A	3	a0001c0002t0002g0029 a0001c0002t0002g0129 a0001c0002t0002g0155 a0001c0002t0002g0029 a0001c0002t0002g0129 a0001c0002t0002g0155	3	HG02486.hp1 HG02818.hp1 HG03225.hp1 HG02486.hp1 HG02818.hp1 HG03225.hp1	intron_variant	MODIFIER	c.-167-12853G>A c.-167-12853G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110432300
chrX:110432459	AGAAGG AGAAGG	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-12693_-167-12 others(11): Show c.-167-12693_-167-12689delGAAGG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110432459
chrX:110432613	C C	T T	4	a0001c0001t0001g0020 a0001c0001t0001g0025 a0001c0001t0001g0046 others(1): Show a0001c0001t0001g0020 a0001c0001t0001g0025 a0001c0001t0001g0046 a0001c0001t0001g0055	4	HG02074.hp1 HG02132.hp1 NA18985.hp1 others(1): Show HG02074.hp1 HG02132.hp1 NA18985.hp1 NA19070.hp1	intron_variant	MODIFIER	c.-167-12540C>T c.-167-12540C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110432613
chrX:110432648	C C	A A	3	a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158	3	HG02622.hp2 HG02897.hp1 HG03041.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1	intron_variant	MODIFIER	c.-167-12505C>A c.-167-12505C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110432648
chrX:110432731	ATGTC ATGTC	A A	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-12421_-167-12 others(10): Show c.-167-12421_-167-12418delTGTC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110432731
chrX:110433162	A A	AGTGCT AGTGCT	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-11991_-167-11 others(11): Show c.-167-11991_-167-11990insGTGCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110433162
chrX:110433163	A A	G G	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-11990A>G c.-167-11990A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110433163
chrX:110433165	C C	A A	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-11988C>A c.-167-11988C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110433165
chrX:110433406	GA GA	G G	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-11745delA c.-167-11745delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110433406
chrX:110433502	G G	GA GA	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-11646dupA c.-167-11646dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110433502
chrX:110433531	G G	GC GC	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-11621dupC c.-167-11621dupC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110433531
chrX:110433704	CTT CTT	C C	3	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0156 a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0156	4	HG02145.hp1 HG02895.hp1 HG02897.hp2 others(1): Show HG02145.hp1 HG02895.hp1 HG02897.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-167-11446_-167-11 others(8): Show c.-167-11446_-167-11445delTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110433704
chrX:110433756	A A	G G	1	a0001c0001t0001g0063 a0001c0001t0001g0063	1	NA19088.hp1 NA19088.hp1	intron_variant	MODIFIER	c.-167-11397A>G c.-167-11397A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110433756
chrX:110433845	GT GT	G G	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-11305delT c.-167-11305delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110433845
chrX:110434221	G G	C C	3	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0156 a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0156	4	HG02145.hp1 HG02895.hp1 HG02897.hp2 others(1): Show HG02145.hp1 HG02895.hp1 HG02897.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-167-10932G>C c.-167-10932G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110434221
chrX:110434309	CT CT	C C	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-10839delT c.-167-10839delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110434309
chrX:110434357	A A	AG AG	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-10793dupG c.-167-10793dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110434357
chrX:110434375	AG AG	A A	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-167-10775delG c.-167-10775delG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110434375
chrX:110434398	C C	CG CG	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-167-10753dupG c.-167-10753dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110434398
chrX:110434538	TG TG	T T	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-10611delG c.-167-10611delG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110434538
chrX:110434707	CG CG	C C	1	a0001c0001t0001g0046 a0001c0001t0001g0046	1	NA18985.hp1 NA18985.hp1	intron_variant	MODIFIER	c.-167-10444delG c.-167-10444delG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110434707
chrX:110435020	A A	AAGGAAGG others(13): Show AAGGAAGGGAGGGACAGAGGG	3	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0156 a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0156	4	HG02145.hp1 HG02895.hp1 HG02897.hp2 others(1): Show HG02145.hp1 HG02895.hp1 HG02897.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-167-10130_-167-10 others(26): Show c.-167-10130_-167-10111dupGAAGGGAGGGACAGAGGGAG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110435020
chrX:110435061	AG AG	A A	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-167-10089delG c.-167-10089delG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110435061
chrX:110435104	A A	AG AG	3	a0001c0001t0001g0013 a0001c0001t0001g0046 a0001c0001t0001g0077 a0001c0001t0001g0013 a0001c0001t0001g0046 a0001c0001t0001g0077	3	HG01261.hp1 NA18985.hp1 NA19006.hp1 HG01261.hp1 NA18985.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-167-10043dupG c.-167-10043dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110435104
chrX:110435122	G G	A A	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-10031G>A c.-167-10031G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110435122
chrX:110435130	G G	GGGGA GGGGA	1	a0001c0001t0001g0074 a0001c0001t0001g0074	1	NA19058.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-10020_-167-10 others(10): Show c.-167-10020_-167-10019insAGGG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110435130
chrX:110435177	G G	GA GA	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-167-9974dupA c.-167-9974dupA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110435177
chrX:110435347	A A	T T	3	a0001c0002t0002g0139 a0001c0002t0004g0120 a0001c0002t0005g0133 a0001c0002t0002g0139 a0001c0002t0004g0120 a0001c0002t0005g0133	3	HG03098.hp1 HG03471.hp1 NA18906.hp2 HG03098.hp1 HG03471.hp1 NA18906.hp2	intron_variant	MODIFIER	c.-167-9806A>T c.-167-9806A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110435347
chrX:110435442	T T	G G	35	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 others(32): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0029 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0010g0147 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150	36	HG01109.hp1 HG01884.hp2 HG02258.hp1 others(33): Show HG01109.hp1 HG01884.hp2 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02717.hp1 HG02809.hp1 HG02818.hp1 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-9711T>G c.-167-9711T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110435442
chrX:110435667	T T	C C	3	a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158	3	HG02622.hp2 HG02897.hp1 HG03041.hp1 HG02622.hp2 HG02897.hp1 HG03041.hp1	intron_variant	MODIFIER	c.-167-9486T>C c.-167-9486T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110435667
chrX:110435757	C C	T T	1	a0001c0001t0001g0095 a0001c0001t0001g0095	1	HG02129.hp1 HG02129.hp1	intron_variant	MODIFIER	c.-167-9396C>T c.-167-9396C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110435757
chrX:110435952	A A	G G	1	a0001c0002t0002g0078 a0001c0002t0002g0078	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.-167-9201A>G c.-167-9201A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110435952
chrX:110436422	A A	T T	1	a0001c0001t0001g0061 a0001c0001t0001g0061	1	NA19085.hp1 NA19085.hp1	intron_variant	MODIFIER	c.-167-8731A>T c.-167-8731A>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110436422
chrX:110436554	C C	T T	1	a0001c0001t0001g0127 a0001c0001t0001g0127	1	HG01256.hp1 HG01256.hp1	intron_variant	MODIFIER	c.-167-8599C>T c.-167-8599C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110436554
chrX:110436564	T T	C C	1	a0001c0001t0001g0013 a0001c0001t0001g0013	1	NA19006.hp1 NA19006.hp1	intron_variant	MODIFIER	c.-167-8589T>C c.-167-8589T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110436564
chrX:110436885	C C	T T	19	a0001c0001t0001g0101 a0001c0002t0002g0026 a0001c0002t0002g0053 others(16): Show a0001c0001t0001g0101 a0001c0002t0002g0026 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0123 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0014 a0002c0003t0002g0084 a0002c0003t0002g0125 a0005c0007t0005g0007 a0010c0009t0002g0011	19	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(16): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01167.hp1 HG01243.hp1 HG01258.hp1 HG01515.hp1 HG02055.hp1 HG02647.hp1 HG02809.hp2 HG02818.hp2 HG02965.hp1 HG03688.hp1 HG04228.hp1 NA19030.hp2 NA19043.hp1 NA19063.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-167-8268C>T c.-167-8268C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110436885
chrX:110437669	TC TC	T T	6	a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0136 others(3): Show a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0136 a0001c0002t0002g0141 a0001c0002t0002g0144 a0001c0002t0002g0145	6	HG02451.hp1 HG02717.hp1 HG02809.hp1 others(3): Show HG02451.hp1 HG02717.hp1 HG02809.hp1 HG03041.hp2 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-167-7482delC c.-167-7482delC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110437669
chrX:110437691	G G	A A	1	a0001c0002t0004g0034 a0001c0002t0004g0034	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.-167-7462G>A c.-167-7462G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110437691
chrX:110437718	A A	AG AG	1	a0001c0001t0008g0073 a0001c0001t0008g0073	1	NA18989.hp1 NA18989.hp1	intron_variant	MODIFIER	c.-167-7430dupG c.-167-7430dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110437718
chrX:110437818	ATC ATC	A A	5	a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 others(2): Show a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097 a0003c0005t0002g0138	5	HG02622.hp2 HG02630.hp2 HG02886.hp2 others(2): Show HG02622.hp2 HG02630.hp2 HG02886.hp2 HG02897.hp1 HG03041.hp1	intron_variant	MODIFIER	c.-167-7333_-167-733 others(6): Show c.-167-7333_-167-7332delCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110437818
chrX:110438628	T T	C C	1	a0005c0007t0005g0007 a0005c0007t0005g0007	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.-167-6525T>C c.-167-6525T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110438628
chrX:110438829	T T	C C	11	a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0053 others(8): Show a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0123 a0001c0002t0002g0151 a0001c0002t0009g0008	11	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(8): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01167.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG03688.hp1 HG03710.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-167-6324T>C c.-167-6324T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110438829
chrX:110439137	A A	G G	3	a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131	3	HG01243.hp1 HG02818.hp2 NA20300.hp2 HG01243.hp1 HG02818.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-167-6016A>G c.-167-6016A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110439137
chrX:110439380	G G	A A	1	a0001c0002t0004g0034 a0001c0002t0004g0034	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.-167-5773G>A c.-167-5773G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110439380
chrX:110439780	G G	T T	1	a0001c0001t0001g0095 a0001c0001t0001g0095	1	HG02129.hp1 HG02129.hp1	intron_variant	MODIFIER	c.-167-5373G>T c.-167-5373G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110439780
chrX:110439868	C C	T T	1	a0001c0001t0001g0056 a0001c0001t0001g0056	1	NA18959.hp1 NA18959.hp1	intron_variant	MODIFIER	c.-167-5285C>T c.-167-5285C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110439868
chrX:110440060	A A	AC AC	1	a0001c0001t0001g0110 a0001c0001t0001g0110	1	NA19067.hp1 NA19067.hp1	intron_variant	MODIFIER	c.-167-5088dupC c.-167-5088dupC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110440060
chrX:110440911	G G	C C	42	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 others(39): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0004g0034 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0009g0008 a0001c0002t0010g0147 a0007c0008t0002g0150 a0010c0009t0002g0011	43	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(40): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01109.hp1 HG01167.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02630.hp1 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02818.hp1 HG02886.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19063.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-4242G>C c.-167-4242G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110440911
chrX:110441069	G G	T T	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	NA18966.hp1 NA18966.hp1	intron_variant	MODIFIER	c.-167-4084G>T c.-167-4084G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110441069
chrX:110441087	C C	G G	6	a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 others(3): Show a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138	6	HG02622.hp2 HG02630.hp2 HG02886.hp2 others(3): Show HG02622.hp2 HG02630.hp2 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03195.hp1	intron_variant	MODIFIER	c.-167-4066C>G c.-167-4066C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110441087
chrX:110441142	G G	A A	1	a0005c0007t0005g0007 a0005c0007t0005g0007	1	HG02055.hp1 HG02055.hp1	intron_variant	MODIFIER	c.-167-4011G>A c.-167-4011G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110441142
chrX:110441226	T T	G G	56	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 others(53): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0034 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0009g0008 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	58	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(55): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01243.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA19063.hp1 NA20300.hp2 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-3927T>G c.-167-3927T>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110441226
chrX:110441693	G G	A A	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	NA18990.hp1 NA18990.hp1	intron_variant	MODIFIER	c.-167-3460G>A c.-167-3460G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110441693
chrX:110441740	C C	T T	3	a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131	3	HG01243.hp1 HG02818.hp2 NA20300.hp2 HG01243.hp1 HG02818.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-167-3413C>T c.-167-3413C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110441740
chrX:110441785	A A	G G	2	a0001c0002t0004g0140 a0001c0002t0006g0132 a0001c0002t0004g0140 a0001c0002t0006g0132	2	HG02630.hp1 HG03579.hp1 HG02630.hp1 HG03579.hp1	intron_variant	MODIFIER	c.-167-3368A>G c.-167-3368A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110441785
chrX:110442105	A A	G G	1	a0001c0004t0002g0009 a0001c0004t0002g0009	1	HG02818.hp2 HG02818.hp2	intron_variant	MODIFIER	c.-167-3048A>G c.-167-3048A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110442105
chrX:110442221	T T	TTC TTC	12	a0001c0001t0001g0043 a0001c0001t0001g0065 a0001c0001t0001g0093 others(9): Show a0001c0001t0001g0043 a0001c0001t0001g0065 a0001c0001t0001g0093 a0001c0001t0001g0115 a0001c0001t0001g0134 a0001c0002t0002g0124 a0001c0002t0002g0136 a0001c0002t0002g0141 a0001c0002t0002g0145 a0001c0002t0004g0140 a0001c0002t0006g0132 a0003c0005t0002g0015	12	HG00621.hp1 HG00642.hp1 HG02040.hp1 others(9): Show HG00621.hp1 HG00642.hp1 HG02040.hp1 HG02056.hp1 HG02451.hp1 HG02630.hp1 HG02717.hp1 HG03195.hp1 HG03579.hp1 NA19009.hp1 NA19030.hp1 NA21309.hp1	intron_variant	MODIFIER	c.-167-2906_-167-290 others(6): Show c.-167-2906_-167-2905dupCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442221
chrX:110442221	T T	TTCTC TTCTC	5	a0001c0001t0001g0089 a0001c0002t0002g0122 a0001c0002t0002g0129 others(2): Show a0001c0001t0001g0089 a0001c0002t0002g0122 a0001c0002t0002g0129 a0001c0002t0002g0155 a0001c0002t0010g0147	5	HG00673.hp1 HG02818.hp1 HG03225.hp1 others(2): Show HG00673.hp1 HG02818.hp1 HG03225.hp1 HG03486.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-2908_-167-290 others(8): Show c.-167-2908_-167-2905dupCTCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442221
chrX:110442221	T T	TTCTCTC TTCTCTC	23	a0001c0001t0001g0042 a0001c0001t0003g0083 a0001c0001t0003g0085 others(20): Show a0001c0001t0001g0042 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0159 a0001c0002t0002g0026 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0114 a0001c0002t0002g0123 a0001c0002t0002g0128 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0004g0120 a0001c0002t0005g0133 a0010c0009t0002g0011	23	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(20): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01167.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG02027.hp1 HG02258.hp1 HG02572.hp1 HG02622.hp1 HG02647.hp1 HG02809.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp2 HG03471.hp1 HG03486.hp2 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA18906.hp2	intron_variant	MODIFIER	c.-167-2910_-167-290 others(10): Show c.-167-2910_-167-2905dupCTCTCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442221
chrX:110442221	T T	TTCTCTCT others(1): Show TTCTCTCTC	7	a0001c0001t0003g0121 a0001c0002t0002g0053 a0001c0002t0002g0086 others(4): Show a0001c0001t0003g0121 a0001c0002t0002g0053 a0001c0002t0002g0086 a0001c0002t0002g0130 a0001c0002t0004g0034 a0003c0005t0002g0138 a0007c0008t0002g0150	7	HG01109.hp1 HG02451.hp2 HG02630.hp2 others(4): Show HG01109.hp1 HG02451.hp2 HG02630.hp2 HG02886.hp1 HG03209.hp1 HG03688.hp1 NA19063.hp1	intron_variant	MODIFIER	c.-167-2912_-167-290 others(12): Show c.-167-2912_-167-2905dupCTCTCTCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442221
chrX:110442221	T T	TTCTCTCT others(3): Show TTCTCTCTCTC	2	a0001c0002t0002g0006 a0002c0003t0002g0154 a0001c0002t0002g0006 a0002c0003t0002g0154	3	HG01884.hp2 HG03041.hp1 HG03139.hp1 HG01884.hp2 HG03041.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-167-2914_-167-290 others(14): Show c.-167-2914_-167-2905dupCTCTCTCTCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442221
chrX:110442221	T T	TTCTCTCT others(7): Show TTCTCTCTCTCTCTC	2	a0002c0003t0002g0157 a0002c0003t0002g0158 a0002c0003t0002g0157 a0002c0003t0002g0158	2	HG02622.hp2 HG02897.hp1 HG02622.hp2 HG02897.hp1	intron_variant	MODIFIER	c.-167-2918_-167-290 others(18): Show c.-167-2918_-167-2905dupCTCTCTCTCTCTCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442221
chrX:110442221	TTCTC TTCTC	T T	1	a0009c0011t0001g0068 a0009c0011t0001g0068	1	NA18955.hp1 NA18955.hp1	intron_variant	MODIFIER	c.-167-2908_-167-290 others(8): Show c.-167-2908_-167-2905delCTCT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442221
chrX:110442247	C C	CTCTCTCT others(3): Show CTCTCTCTCTG	1	a0001c0002t0002g0023 a0001c0002t0002g0023	1	HG03710.hp1 HG03710.hp1	intron_variant	MODIFIER	c.-167-2905_-167-290 others(14): Show c.-167-2905_-167-2904insCTCTCTCTGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442247
chrX:110442247	C C	CTCTCTGT others(1): Show CTCTCTGTG	1	a0001c0004t0002g0010 a0001c0004t0002g0010	1	HG01243.hp1 HG01243.hp1	intron_variant	MODIFIER	c.-167-2905_-167-290 others(12): Show c.-167-2905_-167-2904insCTCTGTGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442247
chrX:110442247	C C	CTCTCTGT others(3): Show CTCTCTGTGTG	2	a0001c0004t0002g0009 a0001c0004t0002g0131 a0001c0004t0002g0009 a0001c0004t0002g0131	2	HG02818.hp2 NA20300.hp2 HG02818.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-167-2905_-167-290 others(14): Show c.-167-2905_-167-2904insCTCTGTGTGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442247
chrX:110442247	C C	CTG CTG	8	a0001c0001t0001g0035 a0001c0001t0001g0041 a0001c0001t0001g0044 others(5): Show a0001c0001t0001g0035 a0001c0001t0001g0041 a0001c0001t0001g0044 a0001c0001t0001g0076 a0001c0001t0001g0082 a0001c0001t0001g0091 a0001c0001t0001g0095 a0001c0001t0001g0110	8	HG02015.hp1 HG02129.hp1 HG03942.hp1 others(5): Show HG02015.hp1 HG02129.hp1 HG03942.hp1 NA18747.hp1 NA18983.hp1 NA19056.hp1 NA19067.hp1 NA19082.hp1	intron_variant	MODIFIER	c.-167-2866_-167-286 others(6): Show c.-167-2866_-167-2865dupGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442247
chrX:110442247	C C	CTGTGTG CTGTGTG	2	a0001c0002t0002g0012 a0001c0002t0002g0156 a0001c0002t0002g0012 a0001c0002t0002g0156	2	HG02145.hp1 HG06807.hp2 HG02145.hp1 HG06807.hp2	intron_variant	MODIFIER	c.-167-2870_-167-286 others(10): Show c.-167-2870_-167-2865dupGTGTGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442247
chrX:110442247	C C	CTGTGTGT others(1): Show CTGTGTGTG	1	a0001c0002t0002g0004 a0001c0002t0002g0004	2	HG02895.hp1 HG02897.hp2 HG02895.hp1 HG02897.hp2	intron_variant	MODIFIER	c.-167-2872_-167-286 others(12): Show c.-167-2872_-167-2865dupGTGTGTGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442247
chrX:110442247	C C	G G	1	a0001c0001t0001g0025 a0001c0001t0001g0025	1	HG02132.hp1 HG02132.hp1	intron_variant	MODIFIER	c.-167-2906C>G c.-167-2906C>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110442247
chrX:110442247	CTG CTG	C C	9	a0001c0001t0001g0050 a0001c0001t0001g0060 a0001c0001t0001g0074 others(6): Show a0001c0001t0001g0050 a0001c0001t0001g0060 a0001c0001t0001g0074 a0001c0002t0002g0148 a0001c0002t0002g0149 a0002c0003t0002g0014 a0002c0003t0002g0084 a0002c0003t0002g0125 a0003c0005t0002g0097	9	HG01106.hp1 HG02809.hp2 HG02886.hp2 others(6): Show HG01106.hp1 HG02809.hp2 HG02886.hp2 HG02965.hp1 NA18944.hp1 NA18988.hp1 NA19030.hp2 NA19043.hp1 NA19058.hp1	intron_variant	MODIFIER	c.-167-2866_-167-286 others(6): Show c.-167-2866_-167-2865delGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442247
chrX:110442247	CTGTG CTGTG	C C	2	a0001c0001t0001g0059 a0001c0001t0001g0127 a0001c0001t0001g0059 a0001c0001t0001g0127	2	HG01256.hp1 NA18971.hp1 HG01256.hp1 NA18971.hp1	intron_variant	MODIFIER	c.-167-2868_-167-286 others(8): Show c.-167-2868_-167-2865delGTGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442247
chrX:110442247	CTGTGTG CTGTGTG	C C	2	a0001c0001t0001g0022 a0001c0002t0009g0008 a0001c0001t0001g0022 a0001c0002t0009g0008	2	HG01884.hp1 NA19000.hp1 HG01884.hp1 NA19000.hp1	intron_variant	MODIFIER	c.-167-2870_-167-286 others(10): Show c.-167-2870_-167-2865delGTGTGT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442247
chrX:110442249	G G	C C	41	a0001c0001t0001g0077 a0001c0001t0003g0083 a0001c0001t0003g0085 others(38): Show a0001c0001t0001g0077 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0159 a0001c0002t0002g0006 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0004g0034 a0001c0002t0004g0140 a0001c0002t0006g0132 a0001c0002t0010g0147 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0138 a0007c0008t0002g0150 a0010c0009t0002g0011	42	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(39): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01167.hp1 HG01258.hp1 HG01261.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp2 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02818.hp1 HG02886.hp1 HG02897.hp1 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG06807.hp1 NA18522.hp1 NA18906.hp1 NA19030.hp1 NA19063.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-2904G>C c.-167-2904G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110442249
chrX:110442251	G G	C C	16	a0001c0001t0001g0060 a0001c0002t0002g0029 a0001c0002t0002g0122 others(13): Show a0001c0001t0001g0060 a0001c0002t0002g0029 a0001c0002t0002g0122 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0004g0034 a0001c0002t0010g0147 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138	16	HG02258.hp1 HG02451.hp2 HG02486.hp1 others(13): Show HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02622.hp2 HG02630.hp2 HG02818.hp1 HG02886.hp1 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03195.hp1 HG03225.hp1 HG03486.hp1 HG03486.hp2 NA18988.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-167-2902G>C c.-167-2902G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110442251
chrX:110442253	G G	C C	8	a0001c0002t0002g0029 a0001c0002t0002g0122 a0001c0002t0002g0129 others(5): Show a0001c0002t0002g0029 a0001c0002t0002g0122 a0001c0002t0002g0129 a0001c0002t0002g0155 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0097	8	HG02486.hp1 HG02622.hp2 HG02818.hp1 others(5): Show HG02486.hp1 HG02622.hp2 HG02818.hp1 HG02886.hp2 HG02897.hp1 HG03041.hp1 HG03225.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-167-2900G>C c.-167-2900G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110442253
chrX:110442255	G G	C C	5	a0001c0002t0002g0029 a0001c0002t0002g0122 a0001c0002t0002g0129 others(2): Show a0001c0002t0002g0029 a0001c0002t0002g0122 a0001c0002t0002g0129 a0001c0002t0002g0155 a0001c0002t0009g0008	5	HG01884.hp1 HG02486.hp1 HG02818.hp1 others(2): Show HG01884.hp1 HG02486.hp1 HG02818.hp1 HG03225.hp1 HG03486.hp1	intron_variant	MODIFIER	c.-167-2898G>C c.-167-2898G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110442255
chrX:110442257	G G	C C	1	a0001c0002t0009g0008 a0001c0002t0009g0008	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.-167-2896G>C c.-167-2896G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110442257
chrX:110442259	G G	C C	1	a0001c0002t0009g0008 a0001c0002t0009g0008	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.-167-2894G>C c.-167-2894G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110442259
chrX:110442261	G G	C C	1	a0001c0002t0009g0008 a0001c0002t0009g0008	1	HG01884.hp1 HG01884.hp1	intron_variant	MODIFIER	c.-167-2892G>C c.-167-2892G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110442261
chrX:110442287	GT GT	G G	1	a0001c0002t0002g0053 a0001c0002t0002g0053	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.-167-2863delT c.-167-2863delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442287
chrX:110442288	T T	TG TG	3	a0001c0001t0001g0030 a0001c0001t0001g0081 a0001c0001t0001g0090 a0001c0001t0001g0030 a0001c0001t0001g0081 a0001c0001t0001g0090	3	HG01099.hp1 NA18974.hp1 NA19089.hp1 HG01099.hp1 NA18974.hp1 NA19089.hp1	intron_variant	MODIFIER	c.-167-2865_-167-286 others(5): Show c.-167-2865_-167-2864insG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110442288
chrX:110442793	A A	AC AC	1	a0001c0001t0001g0119 a0001c0001t0001g0119	1	NA19062.hp1 NA19062.hp1	intron_variant	MODIFIER	c.-167-2358dupC c.-167-2358dupC	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3	INFO_REALIGN_3_PRIME	chrX	110442793
chrX:110444598	A A	G G	1	a0001c0002t0002g0053 a0001c0002t0002g0053	1	HG03688.hp1 HG03688.hp1	intron_variant	MODIFIER	c.-167-555A>G c.-167-555A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110444598
chrX:110444621	T T	A A	1	a0001c0001t0001g0066 a0001c0001t0001g0066	1	HG00609.hp1 HG00609.hp1	intron_variant	MODIFIER	c.-167-532T>A c.-167-532T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110444621
chrX:110445127	C C	T T	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG04115.hp1 HG04115.hp1	intron_variant	MODIFIER	c.-167-26C>T c.-167-26C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	1/3		chrX	110445127
chrX:110445461	G G	C C	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-52+193G>C c.-52+193G>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110445461
chrX:110445924	A A	G G	42	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 others(39): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0120 a0001c0002t0005g0133 a0001c0002t0009g0008 a0001c0002t0010g0147 a0007c0008t0002g0150 a0010c0009t0002g0011	44	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(41): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01109.hp1 HG01167.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03688.hp1 HG03710.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19063.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-52+656A>G c.-52+656A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110445924
chrX:110446055	T T	A A	3	a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131	3	HG01243.hp1 HG02818.hp2 NA20300.hp2 HG01243.hp1 HG02818.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-52+787T>A c.-52+787T>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110446055
chrX:110446119	T T	C C	1	a0001c0001t0001g0037 a0001c0001t0001g0037	1	NA18966.hp1 NA18966.hp1	intron_variant	MODIFIER	c.-52+851T>C c.-52+851T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110446119
chrX:110446194	G G	A A	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-52+926G>A c.-52+926G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110446194
chrX:110446240	C C	T T	60	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 others(57): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0034 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0009g0008 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0014 a0002c0003t0002g0084 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0005c0007t0005g0007 a0007c0008t0002g0150 a0010c0009t0002g0011	62	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(59): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01243.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19063.hp1 NA20300.hp2 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-52+972C>T c.-52+972C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110446240
chrX:110446429	C C	T T	3	a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131	3	HG01243.hp1 HG02818.hp2 NA20300.hp2 HG01243.hp1 HG02818.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-52+1161C>T c.-52+1161C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110446429
chrX:110446485	C C	T T	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-52+1217C>T c.-52+1217C>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110446485
chrX:110446645	G G	A A	1	a0001c0001t0001g0035 a0001c0001t0001g0035	1	NA19056.hp1 NA19056.hp1	intron_variant	MODIFIER	c.-52+1377G>A c.-52+1377G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110446645
chrX:110446767	A A	G G	1	a0001c0001t0001g0112 a0001c0001t0001g0112	1	NA18977.hp1 NA18977.hp1	intron_variant	MODIFIER	c.-52+1499A>G c.-52+1499A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110446767
chrX:110447111	C C	CT CT	10	a0001c0001t0001g0022 a0001c0001t0001g0032 a0001c0001t0001g0042 others(7): Show a0001c0001t0001g0022 a0001c0001t0001g0032 a0001c0001t0001g0042 a0001c0001t0001g0046 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0062 a0001c0001t0001g0067 a0001c0001t0001g0077 a0001c0001t0001g0082	10	HG01261.hp1 HG02027.hp1 HG02135.hp1 others(7): Show HG01261.hp1 HG02027.hp1 HG02135.hp1 HG03942.hp1 NA18944.hp1 NA18967.hp1 NA18985.hp1 NA18994.hp1 NA19000.hp1 NA19068.hp1	intron_variant	MODIFIER	c.-52+1867dupT c.-52+1867dupT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110447111
chrX:110447111	C C	CTT CTT	1	a0001c0001t0001g0146 a0001c0001t0001g0146	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.-52+1866_-52+1867d others(4): Show c.-52+1866_-52+1867dupTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110447111
chrX:110447111	C C	CTTT CTTT	6	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0151 others(3): Show a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0151 a0001c0002t0002g0156 a0001c0002t0004g0120 a0002c0003t0002g0014	7	HG00099.hp1 HG02145.hp1 HG02895.hp1 others(4): Show HG00099.hp1 HG02145.hp1 HG02895.hp1 HG02897.hp2 HG03471.hp1 HG06807.hp2 NA19030.hp2	intron_variant	MODIFIER	c.-52+1865_-52+1867d others(5): Show c.-52+1865_-52+1867dupTTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110447111
chrX:110447111	C C	CTTTT CTTTT	33	a0001c0002t0002g0006 a0001c0002t0002g0023 a0001c0002t0002g0026 others(30): Show a0001c0002t0002g0006 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0009g0008 a0001c0002t0010g0147 a0002c0003t0002g0084 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0005c0007t0005g0007 a0007c0008t0002g0150	34	HG00140.hp1 HG00280.hp1 HG01167.hp1 others(31): Show HG00140.hp1 HG00280.hp1 HG01167.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG02055.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02622.hp2 HG02630.hp2 HG02717.hp1 HG02809.hp2 HG02818.hp1 HG02886.hp2 HG02897.hp1 HG02965.hp1 HG03041.hp1 HG03139.hp1 HG03195.hp1 HG03209.hp1 HG03486.hp1 HG03486.hp2 HG03688.hp1 HG03710.hp1 NA18906.hp1 NA18906.hp2 NA19063.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-52+1864_-52+1867d others(6): Show c.-52+1864_-52+1867dupTTTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110447111
chrX:110447111	C C	CTTTTT CTTTTT	15	a0001c0001t0003g0083 a0001c0001t0003g0121 a0001c0001t0003g0159 others(12): Show a0001c0001t0003g0083 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0114 a0001c0002t0002g0128 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0155 a0001c0002t0005g0133 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0010c0009t0002g0011	15	HG01109.hp1 HG01243.hp1 HG02622.hp1 others(12): Show HG01109.hp1 HG01243.hp1 HG02622.hp1 HG02647.hp1 HG02809.hp1 HG02818.hp2 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03195.hp2 HG03225.hp1 HG06807.hp1 NA18522.hp1 NA19030.hp1 NA20300.hp2	intron_variant	MODIFIER	c.-52+1863_-52+1867d others(7): Show c.-52+1863_-52+1867dupTTTTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110447111
chrX:110447111	C C	CTTTTTT CTTTTTT	1	a0001c0001t0003g0085 a0001c0001t0003g0085	1	HG02572.hp1 HG02572.hp1	intron_variant	MODIFIER	c.-52+1862_-52+1867d others(8): Show c.-52+1862_-52+1867dupTTTTTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110447111
chrX:110447111	CT CT	C C	8	a0001c0001t0001g0018 a0001c0001t0001g0037 a0001c0001t0001g0043 others(5): Show a0001c0001t0001g0018 a0001c0001t0001g0037 a0001c0001t0001g0043 a0001c0001t0001g0075 a0001c0001t0001g0093 a0001c0001t0001g0098 a0001c0001t0001g0119 a0001c0001t0001g0134	8	HG00621.hp1 HG01255.hp1 HG02040.hp1 others(5): Show HG00621.hp1 HG01255.hp1 HG02040.hp1 HG02735.hp1 NA18966.hp1 NA19009.hp1 NA19062.hp1 NA19076.hp1	intron_variant	MODIFIER	c.-52+1867delT c.-52+1867delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110447111
chrX:110447111	CTT CTT	C C	3	a0001c0002t0004g0034 a0001c0002t0004g0140 a0001c0002t0006g0132 a0001c0002t0004g0034 a0001c0002t0004g0140 a0001c0002t0006g0132	3	HG02630.hp1 HG02886.hp1 HG03579.hp1 HG02630.hp1 HG02886.hp1 HG03579.hp1	intron_variant	MODIFIER	c.-52+1866_-52+1867d others(4): Show c.-52+1866_-52+1867delTT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110447111
chrX:110447394	T T	C C	5	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0004g0034 others(2): Show a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0004g0034 a0001c0002t0004g0140 a0001c0002t0006g0132	5	HG01106.hp1 HG02630.hp1 HG02886.hp1 others(2): Show HG01106.hp1 HG02630.hp1 HG02886.hp1 HG03579.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-52+2126T>C c.-52+2126T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110447394
chrX:110447578	A A	G G	2	a0001c0001t0001g0046 a0001c0001t0001g0055 a0001c0001t0001g0046 a0001c0001t0001g0055	2	NA18985.hp1 NA19070.hp1 NA18985.hp1 NA19070.hp1	intron_variant	MODIFIER	c.-52+2310A>G c.-52+2310A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110447578
chrX:110447664	C C	A A	1	a0001c0002t0002g0114 a0001c0002t0002g0114	1	HG06807.hp1 HG06807.hp1	intron_variant	MODIFIER	c.-52+2396C>A c.-52+2396C>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110447664
chrX:110447886	T T	C C	2	a0001c0001t0001g0041 a0001c0001t0001g0095 a0001c0001t0001g0041 a0001c0001t0001g0095	2	HG02129.hp1 NA19082.hp1 HG02129.hp1 NA19082.hp1	intron_variant	MODIFIER	c.-52+2618T>C c.-52+2618T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110447886
chrX:110448037	T T	C C	1	a0001c0002t0002g0137 a0001c0002t0002g0137	1	NA18906.hp1 NA18906.hp1	intron_variant	MODIFIER	c.-51-2530T>C c.-51-2530T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110448037
chrX:110448132	G G	A A	2	a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0148 a0001c0002t0002g0149	2	HG01106.hp1 NA19043.hp1 HG01106.hp1 NA19043.hp1	intron_variant	MODIFIER	c.-51-2435G>A c.-51-2435G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110448132
chrX:110448588	A A	G G	3	a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131	3	HG01243.hp1 HG02818.hp2 NA20300.hp2 HG01243.hp1 HG02818.hp2 NA20300.hp2	intron_variant	MODIFIER	c.-51-1979A>G c.-51-1979A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110448588
chrX:110448702	A A	AG AG	1	a0001c0001t0001g0116 a0001c0001t0001g0116	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-51-1859dupG c.-51-1859dupG	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110448702
chrX:110448925	GA GA	G G	1	a0001c0001t0001g0116 a0001c0001t0001g0116	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-51-1640delA c.-51-1640delA	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110448925
chrX:110449033	CT CT	C C	1	a0001c0001t0001g0116 a0001c0001t0001g0116	1	NA19055.hp1 NA19055.hp1	intron_variant	MODIFIER	c.-51-1530delT c.-51-1530delT	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3	INFO_REALIGN_3_PRIME	chrX	110449033
chrX:110449065	G G	A A	3	a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0156 a0001c0002t0002g0004 a0001c0002t0002g0012 a0001c0002t0002g0156	4	HG02145.hp1 HG02895.hp1 HG02897.hp2 others(1): Show HG02145.hp1 HG02895.hp1 HG02897.hp2 HG06807.hp2	intron_variant	MODIFIER	c.-51-1502G>A c.-51-1502G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110449065
chrX:110449187	T T	C C	158	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(155): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0005 a0001c0001t0001g0013 a0001c0001t0001g0016 a0001c0001t0001g0017 a0001c0001t0001g0018 a0001c0001t0001g0019 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0001t0001g0024 a0001c0001t0001g0025 a0001c0001t0001g0028 a0001c0001t0001g0030 a0001c0001t0001g0031 a0001c0001t0001g0032 a0001c0001t0001g0035 a0001c0001t0001g0036 a0001c0001t0001g0037 a0001c0001t0001g0038 a0001c0001t0001g0039 a0001c0001t0001g0040 a0001c0001t0001g0041 a0001c0001t0001g0042 a0001c0001t0001g0043 a0001c0001t0001g0044 a0001c0001t0001g0046 a0001c0001t0001g0047 a0001c0001t0001g0048 a0001c0001t0001g0049 a0001c0001t0001g0050 a0001c0001t0001g0051 a0001c0001t0001g0052 a0001c0001t0001g0054 a0001c0001t0001g0055 a0001c0001t0001g0056 a0001c0001t0001g0057 a0001c0001t0001g0059 a0001c0001t0001g0060 a0001c0001t0001g0061 a0001c0001t0001g0062 a0001c0001t0001g0063 a0001c0001t0001g0065 a0001c0001t0001g0066 a0001c0001t0001g0067 a0001c0001t0001g0069 a0001c0001t0001g0070 a0001c0001t0001g0071 a0001c0001t0001g0074 a0001c0001t0001g0075 a0001c0001t0001g0076 a0001c0001t0001g0077 a0001c0001t0001g0080 a0001c0001t0001g0081 a0001c0001t0001g0082 a0001c0001t0001g0087 a0001c0001t0001g0088 a0001c0001t0001g0089 a0001c0001t0001g0090 a0001c0001t0001g0091 a0001c0001t0001g0093 a0001c0001t0001g0094 a0001c0001t0001g0095 a0001c0001t0001g0096 a0001c0001t0001g0098 a0001c0001t0001g0099 a0001c0001t0001g0100 a0001c0001t0001g0101 a0001c0001t0001g0102 a0001c0001t0001g0105 a0001c0001t0001g0107 a0001c0001t0001g0108 a0001c0001t0001g0109 a0001c0001t0001g0110 a0001c0001t0001g0111 a0001c0001t0001g0112 a0001c0001t0001g0113 a0001c0001t0001g0115 a0001c0001t0001g0116 a0001c0001t0001g0117 a0001c0001t0001g0118 a0001c0001t0001g0119 a0001c0001t0001g0126 a0001c0001t0001g0127 a0001c0001t0001g0134 a0001c0001t0001g0135 a0001c0001t0001g0146 a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0001t0007g0104 a0001c0001t0008g0073 a0001c0001t0011g0033 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0034 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0009g0008 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0001c0013t0001g0106 a0002c0003t0002g0014 a0002c0003t0002g0084 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0004c0006t0001g0045 a0004c0006t0001g0079 a0005c0007t0005g0007 a0006c0012t0001g0027 a0007c0008t0002g0150 a0008c0010t0001g0092 a0009c0011t0001g0068 a0010c0009t0002g0011	164	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(161): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00280.hp1 HG00609.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00738.hp1 HG01069.hp1 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01192.hp1 HG01243.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp1 HG01261.hp1 HG01358.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG01928.hp1 HG01934.hp1 HG01943.hp1 HG01952.hp1 HG02015.hp1 HG02027.hp1 HG02040.hp1 HG02055.hp1 HG02056.hp1 HG02071.hp1 HG02074.hp1 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02135.hp1 HG02145.hp1 HG02258.hp1 HG02300.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02698.hp1 HG02717.hp1 HG02735.hp1 HG02738.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03017.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03490.hp1 HG03492.hp1 HG03579.hp1 HG03654.hp1 HG03688.hp1 HG03710.hp1 HG03942.hp1 HG04115.hp1 HG04199.hp1 HG04204.hp1 HG04228.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18612.hp1 NA18747.hp1 NA18906.hp1 NA18906.hp2 NA18940.hp1 NA18943.hp1 NA18944.hp1 NA18945.hp1 NA18948.hp1 NA18952.hp1 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18965.hp1 NA18966.hp1 NA18967.hp1 NA18970.hp1 NA18971.hp1 NA18974.hp1 NA18977.hp1 NA18982.hp1 NA18983.hp1 NA18984.hp1 NA18985.hp1 NA18986.hp1 NA18988.hp1 NA18989.hp1 NA18990.hp1 NA18994.hp1 NA18995.hp1 NA19000.hp1 NA19004.hp1 NA19005.hp1 NA19006.hp1 NA19007.hp1 NA19009.hp1 NA19012.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19055.hp1 NA19056.hp1 NA19058.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19066.hp1 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19076.hp1 NA19079.hp1 NA19082.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1 NA19088.hp1 NA19089.hp1 NA19091.hp1 NA20300.hp1 NA20300.hp2 NA20752.hp1 NA20805.hp1 NA20905.hp1 NA21309.hp1 NA21309.hp2 homoSapiens_chm13v2.hp1	intron_variant	MODIFIER	c.-51-1380T>C c.-51-1380T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110449187
chrX:110449636	G G	T T	3	a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138	3	HG02630.hp2 HG02886.hp2 HG03195.hp1 HG02630.hp2 HG02886.hp2 HG03195.hp1	intron_variant	MODIFIER	c.-51-931G>T c.-51-931G>T	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110449636
chrX:110450046	T T	C C	61	a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 others(58): Show a0001c0001t0003g0083 a0001c0001t0003g0085 a0001c0001t0003g0121 a0001c0001t0003g0159 a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0004g0034 a0001c0002t0004g0120 a0001c0002t0004g0140 a0001c0002t0005g0133 a0001c0002t0006g0132 a0001c0002t0009g0008 a0001c0002t0010g0147 a0001c0004t0002g0009 a0001c0004t0002g0010 a0001c0004t0002g0131 a0002c0003t0002g0014 a0002c0003t0002g0084 a0002c0003t0002g0125 a0002c0003t0002g0154 a0002c0003t0002g0157 a0002c0003t0002g0158 a0003c0005t0002g0015 a0003c0005t0002g0097 a0003c0005t0002g0138 a0004c0006t0001g0045 a0004c0006t0001g0079 a0005c0007t0005g0007 a0007c0008t0002g0150 a0010c0009t0002g0011	63	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(60): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01109.hp1 HG01167.hp1 HG01243.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG02055.hp1 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02572.hp1 HG02602.hp1 HG02622.hp1 HG02622.hp2 HG02630.hp1 HG02630.hp2 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02809.hp2 HG02818.hp1 HG02818.hp2 HG02886.hp1 HG02886.hp2 HG02895.hp1 HG02897.hp1 HG02897.hp2 HG02965.hp1 HG03041.hp1 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03195.hp1 HG03195.hp2 HG03209.hp1 HG03225.hp1 HG03471.hp1 HG03486.hp1 HG03486.hp2 HG03579.hp1 HG03688.hp1 HG03710.hp1 HG04199.hp1 HG06807.hp1 HG06807.hp2 NA18522.hp1 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA19063.hp1 NA20300.hp2 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-51-521T>C c.-51-521T>C	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110450046
chrX:110450215	G G	A A	41	a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 others(38): Show a0001c0002t0002g0004 a0001c0002t0002g0006 a0001c0002t0002g0012 a0001c0002t0002g0023 a0001c0002t0002g0026 a0001c0002t0002g0029 a0001c0002t0002g0053 a0001c0002t0002g0058 a0001c0002t0002g0064 a0001c0002t0002g0072 a0001c0002t0002g0078 a0001c0002t0002g0086 a0001c0002t0002g0114 a0001c0002t0002g0122 a0001c0002t0002g0123 a0001c0002t0002g0124 a0001c0002t0002g0128 a0001c0002t0002g0129 a0001c0002t0002g0130 a0001c0002t0002g0136 a0001c0002t0002g0137 a0001c0002t0002g0139 a0001c0002t0002g0141 a0001c0002t0002g0142 a0001c0002t0002g0143 a0001c0002t0002g0144 a0001c0002t0002g0145 a0001c0002t0002g0148 a0001c0002t0002g0149 a0001c0002t0002g0151 a0001c0002t0002g0152 a0001c0002t0002g0153 a0001c0002t0002g0155 a0001c0002t0002g0156 a0001c0002t0005g0133 a0001c0002t0009g0008 a0001c0002t0010g0147 a0004c0006t0001g0045 a0004c0006t0001g0079 a0007c0008t0002g0150 a0010c0009t0002g0011	43	HG00099.hp1 HG00140.hp1 HG00280.hp1 others(40): Show HG00099.hp1 HG00140.hp1 HG00280.hp1 HG01106.hp1 HG01167.hp1 HG01258.hp1 HG01433.hp1 HG01515.hp1 HG01884.hp1 HG01884.hp2 HG02145.hp1 HG02258.hp1 HG02451.hp1 HG02451.hp2 HG02486.hp1 HG02602.hp1 HG02622.hp1 HG02647.hp1 HG02717.hp1 HG02809.hp1 HG02818.hp1 HG02895.hp1 HG02897.hp2 HG03041.hp2 HG03098.hp1 HG03130.hp1 HG03139.hp1 HG03209.hp1 HG03225.hp1 HG03486.hp1 HG03486.hp2 HG03688.hp1 HG03710.hp1 HG04199.hp1 HG06807.hp1 HG06807.hp2 NA18906.hp1 NA18906.hp2 NA19030.hp1 NA19043.hp1 NA19063.hp1 NA21309.hp1 NA21309.hp2	intron_variant	MODIFIER	c.-51-352G>A c.-51-352G>A	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110450215
chrX:110450343	A A	G G	2	a0001c0001t0001g0042 a0001c0001t0001g0089 a0001c0001t0001g0042 a0001c0001t0001g0089	2	HG00673.hp1 HG02027.hp1 HG00673.hp1 HG02027.hp1	intron_variant	MODIFIER	c.-51-224A>G c.-51-224A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	2/3		chrX	110450343
chrX:110455103	A A	G G	1	a0003c0005t0002g0097 a0003c0005t0002g0097	1	HG02886.hp2 HG02886.hp2	intron_variant	MODIFIER	c.4048-99A>G c.4048-99A>G	RTL9	ENSG00000243978.9	transcript	ENST00000520821.6	protein_coding	3/3		chrX	110455103

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🧬 JoGo Online Haplotype Explorer RTL9_chrX_110353848_110461334

JoGo Local Haplotype Explorer (on iGV) RTL9_chrX_110353848_110461334

Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 10)

CCoding Level Haplotype Info (Total: 13)

TTranscript Level Haplotype Info (Total: 11)

GGenebody Level Haplotype Info (Total: 159)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 13)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 22)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 159)

Haplotype Details by Sample (Haploid Level) (Total: 165)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 12)

CCoding Level Variants (Synonymous Mutations) (Total: 5)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 11)

GGenebody Level Haplotype Variants (Intron) (Total: 562)

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Annotation (Repeats)

Annotation (SNP Array)