JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RTL9_chrX_110353848_110461334	0/0	a0006	1388	1	0	1	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	a0007	1388	1	1	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	a0008	1388	1	0	1	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	a0009	1388	1	0	0	1	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTL9_chrX_110353848_110461334	0/0	a0010	1388	1	1	0	0	0	0	copy fasta	RTL9	chrX	110353848	110461334
RTN1_chr14_59590983_59875776	1/1	a0001	776	160	49	29	58	12	10	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	a0002	776	5	4	1	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	a0003	776	3	3	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	a0004	776	1	1	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	a0005	776	1	1	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	a0006	776	1	1	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN1_chr14_59590983_59875776	0/0	a0007	776	1	1	0	0	0	0	copy fasta	RTN1	chr14	59590983	59875776
RTN2_chr19_45480294_45502047	1/1	a0001	545	425	91	83	189	16	44	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	a0002	545	1	0	1	0	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	a0003	545	1	0	0	1	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	a0004	545	1	0	0	0	0	1	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	a0005	545	1	0	0	1	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	a0006	545	1	0	0	0	0	1	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	a0007	545	1	0	0	1	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN2_chr19_45480294_45502047	0/0	a0008	545	1	1	0	0	0	0	copy fasta	RTN2	chr19	45480294	45502047
RTN3_chr11_63676500_63764882	0/1	a0001	1032	87	17	32	18	7	12	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	1/0	a0002	1032	68	52	8	2	3	2	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	a0003	1032	11	1	2	0	0	8	copy fasta	RTN3	chr11	63676500	63764882
RTN3_chr11_63676500_63764882	0/0	a0004	1032	4	4	0	0	0	0	copy fasta	RTN3	chr11	63676500	63764882
RTN4IP1_chr6_106565771_106634498	1/1	a0001	396	391	90	70	181	14	34	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	a0002	396	2	0	0	0	0	2	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	a0003	396	1	1	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	a0004	396	1	1	0	0	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4IP1_chr6_106565771_106634498	0/0	a0005	396	1	0	0	1	0	0	copy fasta	RTN4IP1	chr6	106565771	106634498
RTN4RL1_chr17_1929677_2030334	1/1	a0001	441	376	86	67	156	17	48	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	a0002	441	3	3	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	a0003	441	3	1	1	0	1	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	a0004	441	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL1_chr17_1929677_2030334	0/0	a0005	441	1	1	0	0	0	0	copy fasta	RTN4RL1	chr17	1929677	2030334
RTN4RL2_chr11_57455528_57482534	1/1	a0001	420	348	98	78	124	12	34	copy fasta	RTN4RL2	chr11	57455528	57482534
RTN4R_chr22_20236415_20273318	1/1	a0001	473	389	95	72	160	16	44	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	a0002	473	1	1	0	0	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	a0003	473	1	0	0	1	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4R_chr22_20236415_20273318	0/0	a0004	473	1	0	0	1	0	0	copy fasta	RTN4R	chr22	20236415	20273318
RTN4_chr2_54967189_55055451	1/1	a0001	1192	254	65	35	110	13	29	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0002	1192	49	1	18	21	1	8	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0003	1192	9	9	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0004	1192	8	8	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0005	1192	8	0	2	5	1	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0006	1192	6	5	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0007	1192	5	4	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0008	1192	2	0	0	2	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0009	1114	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0010	1192	1	1	0	0	0	0	copy fasta	RTN4	chr2	54967189	55055451
RTN4_chr2_54967189_55055451	0/0	a0011	1192	1	0	1	0	0	0	copy fasta	RTN4	chr2	54967189	55055451