JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SAA1_chr11_18261264_18274967	0/0	a0012	122	1	1	0	0	0	0	copy fasta	SAA1	chr11	18261264	18274967
SAA2_chr11_18240240_18253668	0/1	a0001	122	375	62	66	196	15	35	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	1/0	a0002	122	90	33	18	25	2	11	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	a0003	122	2	1	0	0	1	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	a0004	122	2	0	2	0	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	a0005	122	2	0	0	2	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	a0006	122	1	1	0	0	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	a0007	122	1	0	0	1	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA2_chr11_18240240_18253668	0/0	a0008	122	1	1	0	0	0	0	copy fasta	SAA2	chr11	18240240	18253668
SAA4_chr11_18226355_18241802	0/1	a0001	130	359	75	76	149	14	44	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	1/0	a0002	130	53	21	6	23	0	2	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	0/0	a0003	130	4	0	0	4	0	0	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	0/0	a0004	130	1	1	0	0	0	0	copy fasta	SAA4	chr11	18226355	18241802
SAA4_chr11_18226355_18241802	0/0	a0005	130	1	1	0	0	0	0	copy fasta	SAA4	chr11	18226355	18241802
SAAL1_chr11_18075292_18111082	1/0	a0001	474	161	52	28	57	5	18	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/1	a0002	475	48	1	9	25	3	9	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0003	474	29	16	5	2	2	4	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0004	474	13	13	0	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0005	476	10	0	0	10	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0006	474	10	9	1	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0007	474	2	2	0	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0008	474	2	0	0	2	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0009	474	2	2	0	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0010	474	2	0	1	0	0	1	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0011	474	1	1	0	0	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0012	474	1	0	0	0	1	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0013	474	1	0	0	1	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0014	474	1	0	0	0	1	0	copy fasta	SAAL1	chr11	18075292	18111082
SAAL1_chr11_18075292_18111082	0/0	a0015	475	1	0	0	1	0	0	copy fasta	SAAL1	chr11	18075292	18111082
SAC3D1_chr11_65036210_65049828	0/1	a0001	358	168	59	41	38	11	18	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	a0002	358	147	20	14	92	5	16	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	a0003	358	28	16	3	8	0	1	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	1/0	a0004	358	4	3	0	0	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	a0005	358	1	1	0	0	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	a0006	358	1	0	0	1	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	a0007	358	1	0	0	1	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	a0008	358	1	1	0	0	0	0	copy fasta	SAC3D1	chr11	65036210	65049828
SAC3D1_chr11_65036210_65049828	0/0	a0009	358	1	0	0	0	0	1	copy fasta	SAC3D1	chr11	65036210	65049828
SACM1L_chr3_45684396_45750409	0/1	a0001	587	198	54	46	72	10	15	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	1/0	a0002	587	155	28	23	82	6	15	copy fasta	SACM1L	chr3	45684396	45750409
SACM1L_chr3_45684396_45750409	0/0	a0003	587	1	0	1	0	0	0	copy fasta	SACM1L	chr3	45684396	45750409
SACS_chr13_23323830_23438702	1/1	a0001	4579	197	58	42	75	6	14	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0002	4579	83	6	22	44	3	8	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0003	4579	32	0	6	25	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0004	4579	11	0	2	1	3	5	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0005	4579	6	6	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0006	4579	5	5	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0007	4579	2	0	2	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0008	4579	2	0	0	2	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0009	4579	2	0	0	2	0	0	copy fasta	SACS	chr13	23323830	23438702