JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SACS_chr13_23323830_23438702	0/0	a0010	4579	2	0	2	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0011	4579	2	2	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0012	4579	2	2	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0013	4579	2	0	0	0	0	2	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0014	4579	2	0	1	0	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0015	4579	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0016	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0017	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0018	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0019	4579	1	0	0	0	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0020	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0021	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0022	4579	1	0	0	0	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0023	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0024	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0025	4579	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0026	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0027	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0028	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0029	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0030	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0031	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0032	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0033	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0034	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0035	4579	1	0	0	0	0	1	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0036	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0037	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0038	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0039	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0040	4579	1	1	0	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0041	4579	1	0	0	1	0	0	copy fasta	SACS	chr13	23323830	23438702
SACS_chr13_23323830_23438702	0/0	a0042	4579	1	0	1	0	0	0	copy fasta	SACS	chr13	23323830	23438702
SAE1_chr19_47125835_47215636	1/1	a0001	346	361	84	68	152	10	45	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	a0002	346	13	0	0	13	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	a0003	346	2	0	0	2	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	a0004	346	1	0	0	1	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	a0005	346	1	1	0	0	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	a0006	346	1	1	0	0	0	0	copy fasta	SAE1	chr19	47125835	47215636
SAE1_chr19_47125835_47215636	0/0	a0007	346	1	0	0	0	0	1	copy fasta	SAE1	chr19	47125835	47215636
SAFB2_chr19_5581999_5627776	1/1	a0001	953	343	87	69	130	16	39	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	a0002	953	2	0	2	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	a0003	69	1	0	0	1	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	a0004	953	1	0	1	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	a0005	953	1	1	0	0	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	a0006	953	1	0	0	1	0	0	copy fasta	SAFB2	chr19	5581999	5627776
SAFB2_chr19_5581999_5627776	0/0	a0007	953	1	0	0	0	0	1	copy fasta	SAFB2	chr19	5581999	5627776
SAFB_chr19_5618083_5673478	1/1	a0001	917	280	76	64	88	10	40	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	a0002	917	1	0	0	1	0	0	copy fasta	SAFB	chr19	5618083	5673478
SAFB_chr19_5618083_5673478	0/0	a0003	917	1	0	0	1	0	0	copy fasta	SAFB	chr19	5618083	5673478