JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCGN_chr6_25647215_25706783	0/0	a0009	276	1	1	0	0	0	0	copy fasta	SCGN	chr6	25647215	25706783
SCHIP1_chr3_159268244_159902359	0/0	a0001	487	97	62	17	10	2	6	copy fasta	SCHIP1	chr3	159268244	159902359
SCHIP1_chr3_159268244_159902359	0/0	a0002	487	2	2	0	0	0	0	copy fasta	SCHIP1	chr3	159268244	159902359
SCHIP1_chr3_159268244_159902359	0/0	a0003	487	1	0	1	0	0	0	copy fasta	SCHIP1	chr3	159268244	159902359
SCIMP_chr17_5203920_5239860	1/1	a0001	145	384	92	70	166	12	42	copy fasta	SCIMP	chr17	5203920	5239860
SCIMP_chr17_5203920_5239860	0/0	a0002	145	2	0	2	0	0	0	copy fasta	SCIMP	chr17	5203920	5239860
SCIN_chr7_12565720_12665182	1/1	a0001	715	189	26	33	95	10	23	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0002	715	128	40	26	42	5	15	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0003	715	10	0	7	3	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0004	715	7	3	3	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0005	55	6	0	0	6	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0006	715	6	0	0	6	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0007	715	6	6	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0008	715	4	4	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0009	715	3	3	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0010	715	3	3	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0011	715	2	1	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0012	715	1	0	0	0	0	1	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0013	715	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0014	715	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0015	715	1	0	0	0	1	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0016	715	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0017	715	1	0	1	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0018	715	1	1	0	0	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCIN_chr7_12565720_12665182	0/0	a0019	71	1	0	0	1	0	0	copy fasta	SCIN	chr7	12565720	12665182
SCLT1_chr4_128878993_129098539	0/1	a0001	688	211	57	40	84	9	20	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	1/0	a0002	688	64	0	14	41	2	6	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	a0003	688	10	0	4	6	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	a0004	688	1	0	0	0	1	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	a0005	688	1	0	0	1	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLT1_chr4_128878993_129098539	0/0	a0006	688	1	1	0	0	0	0	copy fasta	SCLT1	chr4	128878993	129098539
SCLY_chr2_238056001_238104413	1/1	a0001	445	259	48	30	140	12	27	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	a0002	445	82	4	25	43	4	6	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	a0003	445	28	25	3	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	a0004	445	8	8	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	a0005	445	8	6	2	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	a0006	445	3	0	2	0	0	1	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	a0007	445	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	a0008	445	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	a0009	445	1	0	0	1	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCLY_chr2_238056001_238104413	0/0	a0010	445	1	1	0	0	0	0	copy fasta	SCLY	chr2	238056001	238104413
SCMH1_chr1_41022202_41247306	1/1	a0001	670	300	45	58	146	14	35	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	a0002	670	1	1	0	0	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	a0003	670	1	0	0	1	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	a0004	670	1	0	0	0	0	1	copy fasta	SCMH1	chr1	41022202	41247306
SCMH1_chr1_41022202_41247306	0/0	a0005	670	1	0	0	1	0	0	copy fasta	SCMH1	chr1	41022202	41247306
SCML1_chrX_17732493_17759985	1/1	a0001	329	277	70	45	127	7	26	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	a0002	329	3	0	1	2	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML1_chrX_17732493_17759985	0/0	a0003	329	1	0	0	1	0	0	copy fasta	SCML1	chrX	17732493	17759985
SCML2_chrX_18234313_18359688	1/1	a0001	700	243	62	43	107	9	20	copy fasta	SCML2	chrX	18234313	18359688