JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCN4A_chr17_63933554_63977918	0/0	a0013	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0014	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0015	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0016	1836	1	0	0	0	1	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0017	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0018	1836	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0019	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0020	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0021	1836	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0022	1836	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0023	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0024	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0025	1836	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0026	1836	1	0	0	0	0	1	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0027	1836	1	0	0	1	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0028	1836	1	1	0	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4A_chr17_63933554_63977918	0/0	a0029	1836	1	0	1	0	0	0	copy fasta	SCN4A	chr17	63933554	63977918
SCN4B_chr11_118128377_118157823	1/1	a0001	228	440	92	79	203	18	46	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	a0002	228	2	0	0	0	0	2	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	a0003	228	2	0	0	2	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	a0004	88	1	0	1	0	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN4B_chr11_118128377_118157823	0/0	a0005	228	1	0	0	1	0	0	copy fasta	SCN4B	chr11	118128377	118157823
SCN5A_chr3_38543062_38654687	1/1	a0001	2016	226	36	33	121	5	29	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0002	2016	71	24	10	25	3	9	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0003	2016	6	6	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0004	2016	5	5	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0005	2016	4	4	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0006	2016	4	4	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0007	2016	3	3	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0008	2016	2	0	2	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0009	2016	2	1	1	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0010	2016	2	2	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0011	2016	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0012	2016	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0013	2016	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0014	2016	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0015	2016	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0016	2016	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0017	2016	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0018	2016	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0019	2016	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0020	2016	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0021	2016	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0022	2016	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0023	2016	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0024	2016	1	0	0	1	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN5A_chr3_38543062_38654687	0/0	a0025	2016	1	1	0	0	0	0	copy fasta	SCN5A	chr3	38543062	38654687
SCN7A_chr2_166398573_166499249	0/0	a0001	1682	178	42	33	76	6	21	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	1/1	a0002	1682	80	3	17	37	5	16	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0003	1682	24	22	1	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249