JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCN7A_chr2_166398573_166499249	0/0	a0004	1682	21	1	0	20	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0005	1682	14	7	4	0	1	2	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0006	1682	12	3	3	1	0	5	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0007	1682	11	0	4	7	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0008	1682	9	0	4	5	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0009	1682	8	0	0	8	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0010	1682	5	4	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0011	1682	4	0	0	4	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0012	1682	4	0	0	4	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0013	1682	2	0	1	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0014	1682	2	2	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0015	1682	2	0	0	2	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0016	1682	2	0	2	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0017	1682	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0018	1682	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0019	1682	1	0	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0020	1682	1	0	0	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0021	1682	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0022	1621	1	0	0	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0023	1682	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0024	1682	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0025	1682	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0026	1682	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0027	1682	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0028	1682	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0029	1682	1	0	0	0	0	1	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0030	1682	1	0	0	1	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0031	1682	1	1	0	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN7A_chr2_166398573_166499249	0/0	a0032	1682	1	0	1	0	0	0	copy fasta	SCN7A	chr2	166398573	166499249
SCN8A_chr12_51586233_51817864	0/0	a0000	0	2	2	0	0	0	0	copy fasta	SCN8A	chr12	51586233	51817864
SCN8A_chr12_51586233_51817864	1/1	a0001	1980	200	86	32	42	8	30	copy fasta	SCN8A	chr12	51586233	51817864
SCN9A_chr2_166190185_166380944	0/0	a0001	1988	195	37	36	95	6	21	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	1/0	a0002	1988	21	6	8	3	0	3	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0003	1988	15	0	7	8	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0004	1988	12	12	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0005	1988	7	0	6	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0006	1988	6	2	2	0	0	2	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/1	a0007	1988	6	0	4	0	1	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0008	1988	4	0	0	4	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0009	1988	3	3	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0010	1988	2	2	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0011	1988	2	2	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0012	1988	2	2	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0013	1988	2	2	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0014	1988	2	2	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0015	1988	2	0	0	2	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0016	1988	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0017	230	1	0	0	1	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0018	1988	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944
SCN9A_chr2_166190185_166380944	0/0	a0019	1988	1	1	0	0	0	0	copy fasta	SCN9A	chr2	166190185	166380944