JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SCYL2_chr12_100262177_100346715	0/0	a0008	929	1	0	0	1	0	0	copy fasta	SCYL2	chr12	100262177	100346715
SCYL3_chr1_169844631_169898896	0/1	a0001	688	293	73	42	132	11	34	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	1/0	a0002	688	92	7	15	61	3	5	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	a0003	688	15	0	5	5	2	3	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	a0004	688	12	12	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	a0005	688	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	a0006	688	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	a0007	688	1	0	0	0	0	1	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	a0008	688	1	0	1	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	a0009	688	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SCYL3_chr1_169844631_169898896	0/0	a0010	688	1	1	0	0	0	0	copy fasta	SCYL3	chr1	169844631	169898896
SDAD1_chr4_75944915_75995945	1/0	a0001	687	243	60	43	120	3	16	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	a0002	687	73	20	12	19	5	17	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/1	a0003	687	46	0	7	28	4	6	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	a0004	687	6	6	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	a0005	687	2	0	0	2	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	a0006	687	1	1	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	a0007	687	1	0	0	0	0	1	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	a0008	687	1	0	0	1	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	a0009	687	1	0	0	1	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	a0010	687	1	1	0	0	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDAD1_chr4_75944915_75995945	0/0	a0011	687	1	0	0	1	0	0	copy fasta	SDAD1	chr4	75944915	75995945
SDC1_chr2_20195797_20230130	0/1	a0001	310	364	67	60	175	16	45	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	a0002	310	19	8	7	2	0	2	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	1/0	a0003	310	13	11	1	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	a0004	310	5	5	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	a0005	310	3	1	1	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	a0006	310	3	3	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	a0007	310	1	0	0	0	0	1	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	a0008	310	1	0	1	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	a0009	310	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	a0010	310	1	0	0	1	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC1_chr2_20195797_20230130	0/0	a0011	310	1	1	0	0	0	0	copy fasta	SDC1	chr2	20195797	20230130
SDC2_chr8_96488813_96616790	1/0	a0001	201	210	56	47	71	11	24	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/1	a0002	201	83	32	7	38	1	4	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	a0003	201	40	0	6	33	0	1	copy fasta	SDC2	chr8	96488813	96616790
SDC2_chr8_96488813_96616790	0/0	a0004	201	1	0	0	0	0	1	copy fasta	SDC2	chr8	96488813	96616790
SDC3_chr1_30864466_30913758	1/0	a0001	442	193	51	40	62	8	31	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0002	442	106	0	16	82	1	7	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0003	442	61	31	14	9	1	6	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0004	442	8	0	4	1	3	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/1	a0005	442	4	0	2	0	0	1	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0006	436	3	3	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0007	442	2	0	0	2	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0008	442	2	2	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0009	436	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0010	442	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0011	442	1	0	0	1	0	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0012	442	1	0	0	0	1	0	copy fasta	SDC3	chr1	30864466	30913758
SDC3_chr1_30864466_30913758	0/0	a0013	442	1	1	0	0	0	0	copy fasta	SDC3	chr1	30864466	30913758