JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SEPTIN4_chr17_58515256_58549328	0/0	a0008	996	1	1	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0009	996	1	0	0	1	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0010	996	1	0	0	0	0	1	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0011	996	1	0	1	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0012	996	1	1	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0013	996	1	0	0	1	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	a0014	996	1	1	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN5_chr22_19709503_19728319	1/1	a0001	369	383	88	70	161	18	44	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN5_chr22_19709503_19728319	0/0	a0002	369	1	0	0	1	0	0	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN6_chrX_119611945_119698168	1/1	a0001	427	249	74	42	96	7	28	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	a0002	144	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	a0003	295	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	a0004	427	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN7_chr7_35796057_35912110	1/1	a0001	437	345	91	60	154	10	28	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	a0002	437	1	1	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN8_chr5_132745819_132782239	1/1	a0001	483	318	89	53	144	4	26	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	a0002	483	2	0	0	2	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	a0003	483	2	0	2	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	a0004	483	1	1	0	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	a0005	483	1	0	1	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	a0006	483	1	0	0	1	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	a0007	483	1	0	0	1	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN9_chr17_77276499_77505593	0/1	a0001	586	118	46	28	19	3	21	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	1/0	a0002	586	25	20	3	0	1	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	a0003	586	5	2	3	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	a0004	586	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	a0005	586	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77314518_77505593	0/1	a0001	568	124	44	31	19	3	26	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	1/0	a0002	568	26	20	4	0	1	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	a0003	568	6	2	3	0	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	a0004	568	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	a0005	568	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SERAC1_chr6_158104519_158173262	1/1	a0001	654	352	77	58	159	14	42	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	a0002	654	3	1	0	1	0	1	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	a0003	654	3	3	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	a0004	654	3	3	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	a0005	654	2	0	2	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	a0006	654	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	a0007	654	1	0	0	0	0	1	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	a0008	654	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERBP1_chr1_67402810_67435402	1/1	a0001	393	366	84	67	151	16	46	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	a0002	393	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	a0003	393	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERF1A_chr5_70895669_70913115	0/0	a0001	62	4	0	0	2	0	2	copy fasta	SERF1A	chr5	70895669	70913115
SERF1B_chr5_70020251_70048113	0/0	a0001	110	218	54	34	104	10	16	copy fasta	SERF1B	chr5	70020251	70048113
SERF2_chr15_43787320_43801079	1/1	a0001	59	392	94	64	178	10	44	copy fasta	SERF2	chr15	43787320	43801079
SERGEF_chr11_17783048_18018047	1/1	a0001	458	188	58	35	64	6	23	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	a0002	458	23	10	4	0	2	7	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	a0003	458	3	0	3	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/0	a0004	458	3	3	0	0	0	0	copy fasta	SERGEF	chr11	17783048	18018047