Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

Item	Value
geneid	8293
ensemblid	ENSG00000172058.16
hgncid	10755
symbol	SERF1A
name	small EDRK-rich factor 1A
refseq_nuc	NM_022968.2
refseq_prot	NP_075257.1
ensembl_nuc	ENST00000317633.14
ensembl_prot	ENSP00000321791.8
mane_status	MANE Select
chr	chr5
start	70900669
end	70908115
strand	+
ver	v1.2
region	chr5:70900669-70908115
region5000	chr5:70895669-70913115
regionname0	SERF1A_chr5_70900669_70908115
regionname5000	SERF1A_chr5_70895669_70913115

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	62	4	0	0	2	0	2	2	SERF1A_chr5_70895669_70913115	SERF1A	MARGN others(57): Show MARGNQRELARQKNMKKTQEISKGKRKEDSLTASQRKQRDSEIMQEKQKA ANEKKSMQTREK	chr5	70895669	70913115

achapid	grch38/ chm13v2	alen	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aseq	cseq	chr	start	end
a0001c0001	0/0		189	4	0	0	2	0	2	SERF1A_chr5_70895669_70913115	SERF1A		ATGGC others(184): Show ATGGCCCGTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGAA AACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCCT CTCAGAGAAAGCAGAGGGACTCTGAGATCATGCAAGAAAAGCAGAAGGCA GCTAATGAGAAGAAGTCTATGCAGACAAGAGAAAAGTGA	chr5	70895669	70913115

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	699	4	0	0	2	0	2	SERF1A_chr5_70895669_70913115	SERF1A	AGTGA others(694): Show AGTGACGCGCCGGCCATGCCGGCGGCTGTTGTCGGGCCTCCAGCGGGCGG GGCCGTTGGCGGAGCAGAGGGGAGGCGCAGCCGGGCGGAGGGCCCACGAG GGCTCAGCCTTCCCGGTCAGCGGTGGTGACGGTATCCCAGAGTGCCAGAG AACCGTTGCTTTTCCGAGTTGCTCTTCTTCCAGGCTCCGTTGGTGGTCGG CATGGCCCGTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAGA AAACCCAGGAAATTAGCAAGGGAAAGAGGAAAGAGGATAGCTTGACTGCC TCTCAGAGAAAGCAGAGGGACTCTGAGATCATGCAAGAAAAGCAGAAGGC AGCTAATGAGAAGAAGTCTATGCAGACAAGAGAAAAGTGATGACTGGCTA TTTGGAAAACCTGGGTGCTACTGCCAACTGGGTGTATCATAAGCTCTAAG ATCAAGATTTTGTAGAGTGGACAGTCATTACATATGTTATAACTTATCCT TTAAAAACTATTTTAAACTTTATCCTTTCAGCTTTACTTAGTGCGATGTT TTAGAAGCAGTCTTCAAAGAATAAAACACTAACCATGCATGTGACATATT GGTGAACATTATTTTTATTATTGAACATTCATATATAATTTATTAGGTAA TATGATCAGATAATAGGATCTCTTATATAATAAAGAATCTTTGTCATCA	chr5	70895669	70913115

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	2	0	0	1	0	1	SERF1A_chr5_70895669_70913115	SERF1A	chr5	70895669	70913115
a0001c0001t0001g0002	0/0	1	0	0	0	0	1	SERF1A_chr5_70895669_70913115	SERF1A	chr5	70895669	70913115
a0001c0001t0001g0003	0/0	1	0	0	1	0	0	SERF1A_chr5_70895669_70913115	SERF1A	chr5	70895669	70913115

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
NA18992	hp1	a0001	c0001	t0001	g0003	EAS	JPT	SERF1A_chr5_70895669_70913115	SERF1A	chr5	70895669	70913115
NA18992	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SERF1A_chr5_70895669_70913115	SERF1A	chr5	70895669	70913115
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	SERF1A_chr5_70895669_70913115	SERF1A	chr5	70895669	70913115
NA20905	hp2	a0001	c0001	t0001	g0002	SAS	GIH	SERF1A_chr5_70895669_70913115	SERF1A	chr5	70895669	70913115

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chr5:70903743	C C	T T	1	a0001c0001t0001g0003 a0001c0001t0001g0003	1	NA18992.hp1 NA18992.hp1	intron_variant	MODIFIER	c.116+1810C>T c.116+1810C>T		SERF1A	ENSG00000172058.16	transcript	ENST00000317633.14	protein_coding	2/2						chr5	70903743
	chr5:70905179	T T	C C	1	a0001c0001t0001g0002 a0001c0001t0001g0002	1	NA20905.hp2 NA20905.hp2	intron_variant	MODIFIER	c.117-2555T>C c.117-2555T>C		SERF1A	ENSG00000172058.16	transcript	ENST00000317633.14	protein_coding	2/2						chr5	70905179