JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SHC1_chr1_154957298_154975747	0/0	a0008	584	1	0	1	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0009	584	1	1	0	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0010	584	1	0	1	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0011	584	1	0	1	0	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0012	584	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC1_chr1_154957298_154975747	0/0	a0013	584	1	0	0	1	0	0	copy fasta	SHC1	chr1	154957298	154975747
SHC2_chr19_411589_466033	0/0	a0001	582	179	46	35	75	5	18	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	1/1	a0002	582	19	1	6	1	1	8	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	a0003	582	3	3	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	a0004	582	2	0	0	2	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	a0005	582	2	2	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	a0006	582	2	1	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	a0007	582	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	a0008	582	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	a0009	582	1	0	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	a0010	582	1	1	0	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC2_chr19_411589_466033	0/0	a0011	582	1	0	1	0	0	0	copy fasta	SHC2	chr19	411589	466033
SHC3_chr9_89000771_89183818	1/1	a0001	594	185	77	58	8	14	26	copy fasta	SHC3	chr9	89000771	89183818
SHC3_chr9_89000771_89183818	0/0	a0002	594	3	3	0	0	0	0	copy fasta	SHC3	chr9	89000771	89183818
SHC4_chr15_48818741_48968919	1/1	a0001	630	361	84	63	152	16	44	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	a0002	630	16	0	1	15	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	a0003	630	2	0	0	2	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	a0004	630	2	0	0	2	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	a0005	211	1	0	0	1	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	a0006	630	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHC4_chr15_48818741_48968919	0/0	a0007	630	1	1	0	0	0	0	copy fasta	SHC4	chr15	48818741	48968919
SHCBP1L_chr1_182894865_182958166	1/1	a0001	653	215	65	53	69	8	18	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	a0002	653	42	1	3	33	1	4	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	a0003	653	13	13	0	0	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	a0004	653	11	1	0	10	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	a0005	653	9	0	8	0	1	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	a0006	653	7	7	0	0	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	a0007	653	1	1	0	0	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	a0008	653	1	0	0	0	0	1	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	a0009	653	1	0	0	1	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	a0010	653	1	0	0	0	0	1	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1L_chr1_182894865_182958166	0/0	a0011	653	1	0	0	1	0	0	copy fasta	SHCBP1L	chr1	182894865	182958166
SHCBP1_chr16_46573591_46626379	0/1	a0001	672	172	65	42	34	6	24	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	1/0	a0002	672	7	5	1	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	a0003	672	4	0	0	4	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHCBP1_chr16_46573591_46626379	0/0	a0004	672	1	0	1	0	0	0	copy fasta	SHCBP1	chr16	46573591	46626379
SHD_chr19_4274266_4295722	0/0	a0001	340	205	54	41	78	8	24	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	1/1	a0002	340	195	34	44	79	10	26	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	a0003	340	54	6	1	47	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	a0004	340	3	2	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	a0005	340	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	a0006	340	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	a0007	340	1	0	0	1	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	a0008	340	1	1	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722
SHD_chr19_4274266_4295722	0/0	a0009	340	1	1	0	0	0	0	copy fasta	SHD	chr19	4274266	4295722