JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SHMT2_chr12_57224711_57239935	0/1	a0002	504	11	9	1	0	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	a0003	504	2	0	0	1	0	1	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	a0004	504	2	0	0	2	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHMT2_chr12_57224711_57239935	0/0	a0005	504	1	0	1	0	0	0	copy fasta	SHMT2	chr12	57224711	57239935
SHOC1_chr9_111681171_111799937	0/0	a0001	1508	101	9	19	56	6	11	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0002	1508	63	25	6	20	0	12	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0003	1508	29	6	16	2	1	4	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0004	1508	26	0	9	9	2	6	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0005	1508	21	11	1	5	0	4	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0006	1508	16	15	1	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0007	1508	11	10	1	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0008	1508	10	7	3	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/1	a0009	1508	3	0	0	0	2	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0010	1508	2	0	1	0	1	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0011	1508	2	2	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0012	1508	1	0	0	0	0	1	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0013	1508	1	1	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0014	1508	1	0	0	1	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	1/0	a0015	1508	1	0	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0016	1508	1	1	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0017	1508	1	1	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0018	1508	1	0	0	1	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0019	1508	1	0	0	1	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0020	1508	1	0	1	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0021	1508	1	1	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0022	1508	1	0	0	1	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC1_chr9_111681171_111799937	0/0	a0023	1508	1	1	0	0	0	0	copy fasta	SHOC1	chr9	111681171	111799937
SHOC2_chr10_110914604_111018665	1/1	a0001	582	380	87	51	190	8	42	copy fasta	SHOC2	chr10	110914604	111018665
SHOC2_chr10_110914604_111018665	0/0	a0002	582	6	5	1	0	0	0	copy fasta	SHOC2	chr10	110914604	111018665
SHOX2_chr3_158090905_158111420	1/1	a0001	319	373	89	68	153	16	45	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	a0002	319	4	0	0	4	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	a0003	323	1	1	0	0	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	a0004	315	1	0	0	0	0	1	copy fasta	SHOX2	chr3	158090905	158111420
SHOX2_chr3_158090905_158111420	0/0	a0005	312	1	0	0	1	0	0	copy fasta	SHOX2	chr3	158090905	158111420
SHOX_chrX_625791_656584	0/0	a0000	0	5	0	0	3	0	2	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	1/1	a0001	292	212	60	40	90	8	12	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	a0002	190	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	a0003	212	1	0	0	0	0	1	copy fasta	SHOX	chrX	625791	656584
SHOX_chrX_625791_656584	0/0	a0004	95	1	0	0	1	0	0	copy fasta	SHOX	chrX	625791	656584
SHPK_chr17_3603240_3641250	1/1	a0001	478	267	37	73	115	11	29	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0002	478	98	34	6	40	4	14	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0003	478	6	6	0	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0004	478	2	0	0	2	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0005	478	1	0	0	0	1	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0006	478	1	0	0	0	0	1	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0007	118	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0008	478	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0009	478	1	0	0	1	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0010	478	1	0	1	0	0	0	copy fasta	SHPK	chr17	3603240	3641250
SHPK_chr17_3603240_3641250	0/0	a0011	478	1	0	0	1	0	0	copy fasta	SHPK	chr17	3603240	3641250