JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIGLEC11_chr19_49943985_49966172	0/0	a0023	698	1	0	0	0	1	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0024	698	1	0	1	0	0	0	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC11_chr19_49943985_49966172	0/0	a0025	698	1	0	0	0	0	1	copy fasta	SIGLEC11	chr19	49943985	49966172
SIGLEC12_chr19_51486227_51506800	0/1	a0001	114	198	55	48	57	8	29	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	1/0	a0002	595	103	4	6	85	2	5	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0003	28	53	28	12	5	4	4	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0004	595	33	2	1	22	0	8	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0005	114	17	0	0	17	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0006	595	7	0	5	0	0	2	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0007	595	3	0	0	3	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0008	114	2	0	1	0	0	1	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0009	595	2	0	0	0	2	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0010	595	2	0	0	2	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0011	595	2	2	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0012	595	2	2	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0013	595	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0014	595	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0015	595	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0016	595	1	1	0	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0017	595	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0018	595	1	0	1	0	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0019	114	1	0	0	0	0	1	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC12_chr19_51486227_51506800	0/0	a0020	114	1	0	0	1	0	0	copy fasta	SIGLEC12	chr19	51486227	51506800
SIGLEC14_chr19_51634478_51651825	1/1	a0001	396	288	83	73	90	11	29	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	a0002	396	3	0	3	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	a0003	396	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	a0004	396	1	0	0	0	0	1	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	a0005	241	1	0	1	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	a0006	396	1	0	1	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	a0007	396	1	0	0	0	1	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	a0008	396	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	a0009	396	1	0	0	1	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	a0010	81	1	0	0	1	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC14_chr19_51634478_51651825	0/0	a0011	396	1	1	0	0	0	0	copy fasta	SIGLEC14	chr19	51634478	51651825
SIGLEC15_chr18_45820675_45849094	1/1	a0001	328	237	34	50	108	11	32	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0002	328	142	29	21	80	3	9	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0003	328	13	12	0	0	0	1	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0004	328	13	13	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0005	328	2	0	0	2	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0006	12	1	0	0	1	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0007	328	1	0	0	1	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0008	328	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0009	328	1	0	0	0	0	1	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0010	328	1	0	1	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0011	328	1	0	0	0	0	1	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC15_chr18_45820675_45849094	0/0	a0012	328	1	1	0	0	0	0	copy fasta	SIGLEC15	chr18	45820675	45849094
SIGLEC1_chr20_3681970_3717600	0/0	a0001	1709	163	22	19	100	5	17	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	1/1	a0002	1709	68	6	18	30	6	6	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0003	1709	56	10	10	27	0	9	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0004	1709	28	1	2	22	2	1	copy fasta	SIGLEC1	chr20	3681970	3717600