JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIGLEC1_chr20_3681970_3717600	0/0	a0005	1709	17	10	2	0	1	4	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0006	1709	12	1	8	3	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0007	1709	10	3	2	0	2	3	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0008	1709	9	9	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0009	1709	9	9	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0010	1709	9	7	0	1	0	1	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0011	1709	7	0	5	0	1	1	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0012	1709	7	5	2	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0013	1709	3	1	0	2	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0014	1709	2	2	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0015	1709	2	2	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0016	1709	2	1	1	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0017	1709	2	2	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0018	1709	2	2	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0019	1709	2	0	0	2	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0020	1709	2	0	0	2	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0021	1709	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0022	87	1	0	0	0	0	1	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0023	1709	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0024	1709	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0025	1709	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0026	1709	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0027	1709	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0028	1709	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0029	1709	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0030	1709	1	0	1	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0031	1709	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0032	1709	1	0	0	1	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0033	1709	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0034	1709	1	0	0	0	0	1	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0035	1709	1	1	0	0	0	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC1_chr20_3681970_3717600	0/0	a0036	1709	1	0	0	0	1	0	copy fasta	SIGLEC1	chr20	3681970	3717600
SIGLEC5_chr19_51605960_51635401	1/0	a0001	551	122	29	19	54	6	13	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0002	551	106	23	9	64	4	6	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0003	551	35	3	4	25	0	3	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/1	a0004	551	34	2	23	0	2	6	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0005	32	33	6	1	18	3	5	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0006	551	25	7	14	1	0	3	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0007	355	12	12	0	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0008	551	8	1	0	7	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0009	337	6	1	0	0	0	5	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0010	551	4	0	3	0	1	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0011	551	4	3	0	0	0	1	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0012	337	3	0	0	3	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0013	551	3	2	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0014	551	3	0	0	3	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0015	551	2	0	0	2	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0016	551	2	1	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0017	241	2	1	1	0	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401
SIGLEC5_chr19_51605960_51635401	0/0	a0018	337	1	0	0	1	0	0	copy fasta	SIGLEC5	chr19	51605960	51635401