JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SIRPB2_chr20_1469578_1496420	0/0	a0002	342	19	15	4	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	1/0	a0003	342	13	1	3	1	4	3	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/1	a0004	342	7	1	2	3	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	a0005	342	2	0	0	2	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	a0006	342	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	a0007	342	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	a0008	342	1	0	0	1	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	a0009	342	1	0	1	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPB2_chr20_1469578_1496420	0/0	a0010	342	1	1	0	0	0	0	copy fasta	SIRPB2	chr20	1469578	1496420
SIRPD_chr20_1529251_1562705	0/1	a0001	197	303	82	52	116	11	41	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	1/0	a0002	197	83	7	18	53	1	3	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	a0003	197	1	0	0	1	0	0	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	a0004	197	1	1	0	0	0	0	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	a0005	197	1	0	0	1	0	0	copy fasta	SIRPD	chr20	1529251	1562705
SIRPD_chr20_1529251_1562705	0/0	a0006	197	1	0	0	1	0	0	copy fasta	SIRPD	chr20	1529251	1562705
SIRPG_chr20_1624152_1662779	0/0	a0001	387	197	60	34	70	9	24	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0002	387	98	14	22	45	4	13	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	1/1	a0003	387	81	11	15	39	3	11	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0004	387	7	0	0	7	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0005	387	3	3	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0006	387	2	1	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0007	387	1	0	0	1	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0008	65	1	0	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0009	387	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0010	387	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0011	387	1	1	0	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0012	200	1	0	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0013	387	1	0	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRPG_chr20_1624152_1662779	0/0	a0014	387	1	0	1	0	0	0	copy fasta	SIRPG	chr20	1624152	1662779
SIRT1_chr10_67879656_67923390	1/1	a0001	747	404	88	70	185	16	43	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	a0002	747	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	a0003	739	1	1	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	a0004	747	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	a0005	747	1	1	0	0	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	a0006	747	1	0	0	0	0	1	copy fasta	SIRT1	chr10	67879656	67923390
SIRT1_chr10_67879656_67923390	0/0	a0007	747	1	0	0	1	0	0	copy fasta	SIRT1	chr10	67879656	67923390
SIRT2_chr19_38873560_38904618	1/1	a0001	389	417	89	74	194	12	46	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	a0002	389	2	2	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	a0003	389	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	a0004	389	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	a0005	389	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	a0006	389	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	a0007	389	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	a0008	389	1	0	0	1	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT2_chr19_38873560_38904618	0/0	a0009	389	1	1	0	0	0	0	copy fasta	SIRT2	chr19	38873560	38904618
SIRT3_chr11_210030_241342	1/1	a0001	399	295	78	67	122	7	19	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	a0002	399	62	8	7	28	4	15	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	a0003	399	39	0	9	23	1	6	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	a0004	399	7	6	1	0	0	0	copy fasta	SIRT3	chr11	210030	241342
SIRT3_chr11_210030_241342	0/0	a0005	399	4	4	0	0	0	0	copy fasta	SIRT3	chr11	210030	241342