JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC10A6_chr4_86818468_86854384	0/0	a0010	377	1	1	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	a0011	377	1	1	0	0	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	a0012	377	1	0	0	0	0	1	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A6_chr4_86818468_86854384	0/0	a0013	377	1	0	0	1	0	0	copy fasta	SLC10A6	chr4	86818468	86854384
SLC10A7_chr4_146248981_146526940	1/1	a0001	340	237	63	38	103	8	23	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	a0002	340	5	0	2	2	0	1	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	a0003	340	1	0	0	1	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC10A7_chr4_146248981_146526940	0/0	a0004	340	1	1	0	0	0	0	copy fasta	SLC10A7	chr4	146248981	146526940
SLC11A1_chr2_218377273_218401894	1/1	a0001	550	307	90	57	102	16	40	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0002	550	41	5	10	19	0	7	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0003	428	11	1	3	6	0	1	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0004	550	5	0	0	5	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0005	550	3	1	1	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0006	550	2	0	0	2	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0007	550	1	0	0	0	0	1	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0008	550	1	0	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0009	550	1	0	0	0	0	1	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0010	550	1	1	0	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0011	550	1	0	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0012	550	1	0	0	1	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A1_chr2_218377273_218401894	0/0	a0013	550	1	0	1	0	0	0	copy fasta	SLC11A1	chr2	218377273	218401894
SLC11A2_chr12_50980992_51031384	1/1	a0001	561	362	77	73	157	14	39	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	a0002	561	3	3	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	a0003	561	1	1	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	a0004	561	1	0	0	1	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	a0005	561	1	1	0	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	a0006	561	1	0	0	0	0	1	copy fasta	SLC11A2	chr12	50980992	51031384
SLC11A2_chr12_50980992_51031384	0/0	a0007	561	1	0	1	0	0	0	copy fasta	SLC11A2	chr12	50980992	51031384
SLC12A1_chr15_48201302_48309078	0/1	a0001	1099	244	74	34	122	0	13	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	a0002	1099	7	0	0	7	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	a0003	1099	6	0	2	4	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	a0004	1099	2	2	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	a0005	1099	2	0	2	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	a0006	1099	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	a0007	1099	1	0	0	1	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	1/0	a0008	1099	1	0	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	a0009	1099	1	0	0	0	0	1	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A1_chr15_48201302_48309078	0/0	a0010	1099	1	1	0	0	0	0	copy fasta	SLC12A1	chr15	48201302	48309078
SLC12A2_chr5_128078766_128194677	1/1	a0001	1212	337	81	60	150	12	32	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	a0002	1213	7	3	0	4	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	a0003	1206	2	0	0	0	0	2	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	a0004	1212	1	0	1	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	a0005	1212	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	a0006	1212	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	a0007	1212	1	0	1	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	a0008	1212	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	a0009	1212	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	a0010	1208	1	1	0	0	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A2_chr5_128078766_128194677	0/0	a0011	1204	1	0	0	1	0	0	copy fasta	SLC12A2	chr5	128078766	128194677
SLC12A3_chr16_56860207_56920850	0/1	a0001	1021	342	72	57	162	15	35	copy fasta	SLC12A3	chr16	56860207	56920850