JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATXN3L_chrX_13313647_13325053	0/0	a0006	355	1	0	0	1	0	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3L_chrX_13313647_13325053	0/0	a0007	355	1	1	0	0	0	0	copy fasta	ATXN3L	chrX	13313647	13325053
ATXN3_chr14_92053552_92111582	1/0	a0001	361	94	8	17	56	5	7	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0002	370	44	3	27	1	7	6	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0003	374	28	1	2	16	0	9	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0004	366	28	4	0	23	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0005	371	20	6	3	10	1	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0006	375	18	0	0	17	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/1	a0007	375	15	6	6	0	0	2	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0008	367	12	0	2	5	2	3	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0009	376	11	0	0	11	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0010	374	10	0	6	0	1	3	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0011	369	9	7	2	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0012	376	9	6	3	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0013	368	8	1	1	0	2	4	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0014	369	6	5	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0015	373	6	0	0	5	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0016	368	6	3	1	0	0	2	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0017	380	5	5	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0018	377	5	2	0	3	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0019	379	4	2	2	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0020	380	4	2	0	2	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0021	378	4	1	0	3	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0022	372	4	3	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0023	373	4	1	0	0	0	3	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0024	378	4	4	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0025	380	4	4	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0026	384	3	0	0	2	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0027	367	2	2	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0028	376	2	0	0	2	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0029	381	2	1	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0030	388	2	0	2	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0031	385	2	2	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0032	383	2	2	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0033	379	2	1	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0034	371	2	2	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0035	377	2	2	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0036	373	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0037	330	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0038	365	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0039	368	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0040	372	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0041	373	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0042	375	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0043	378	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0044	382	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0045	383	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0046	382	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0047	381	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0048	376	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582