JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC16A13_chr17_7031015_7045117	0/0	a0009	426	1	1	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0010	426	1	1	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0011	426	1	0	0	1	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0012	426	1	1	0	0	0	0	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A13_chr17_7031015_7045117	0/0	a0013	426	1	0	0	0	0	1	copy fasta	SLC16A13	chr17	7031015	7045117
SLC16A14_chr2_230029982_230073924	1/1	a0001	510	411	94	76	178	17	44	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	a0002	510	5	0	2	0	1	2	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	a0003	510	2	2	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	a0004	510	1	1	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A14_chr2_230029982_230073924	0/0	a0005	510	1	1	0	0	0	0	copy fasta	SLC16A14	chr2	230029982	230073924
SLC16A1_chr1_112906847_112961196	0/1	a0001	500	225	74	37	91	3	19	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	1/0	a0002	500	117	7	29	62	5	13	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	a0003	500	2	2	0	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	a0004	500	1	0	0	1	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A1_chr1_112906847_112961196	0/0	a0005	500	1	1	0	0	0	0	copy fasta	SLC16A1	chr1	112906847	112961196
SLC16A2_chrX_74416493_74538916	0/0	a0001	539	163	49	19	75	6	14	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	1/1	a0002	539	69	20	29	2	3	13	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	a0003	165	2	0	0	1	0	1	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A2_chrX_74416493_74538916	0/0	a0004	539	1	0	1	0	0	0	copy fasta	SLC16A2	chrX	74416493	74538916
SLC16A3_chr17_82224042_82245086	1/1	a0001	465	401	94	82	162	14	47	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	a0002	465	7	0	0	4	0	3	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	a0003	465	1	1	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A3_chr17_82224042_82245086	0/0	a0004	465	1	1	0	0	0	0	copy fasta	SLC16A3	chr17	82224042	82245086
SLC16A4_chr1_110357857_110396026	1/1	a0001	487	375	89	67	170	11	36	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	a0002	487	51	0	7	37	1	6	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	a0003	487	4	4	0	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	a0004	100	1	0	0	1	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A4_chr1_110357857_110396026	0/0	a0005	487	1	1	0	0	0	0	copy fasta	SLC16A4	chr1	110357857	110396026
SLC16A5_chr17_75082954_75111162	1/1	a0001	505	411	90	79	172	18	50	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	a0002	505	2	0	0	2	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	a0003	505	2	2	0	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	a0004	499	1	0	1	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	a0005	505	1	1	0	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A5_chr17_75082954_75111162	0/0	a0006	505	1	1	0	0	0	0	copy fasta	SLC16A5	chr17	75082954	75111162
SLC16A6_chr17_68262026_68296127	1/0	a0001	523	183	15	33	100	9	25	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	a0002	523	123	35	26	43	4	15	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/1	a0003	523	44	10	9	15	5	4	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	a0004	523	25	13	6	5	0	1	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	a0005	523	20	14	5	1	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	a0006	523	4	0	0	4	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	a0007	523	3	3	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	a0008	523	2	0	0	0	0	2	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	a0009	523	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	a0010	523	1	0	1	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	a0011	523	1	1	0	0	0	0	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A6_chr17_68262026_68296127	0/0	a0012	523	1	0	0	0	0	1	copy fasta	SLC16A6	chr17	68262026	68296127
SLC16A7_chr12_59591029_59794841	1/1	a0001	478	183	58	28	72	4	19	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	a0002	478	69	16	8	34	2	9	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	a0003	478	2	0	2	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	a0004	478	2	2	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841