JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC16A7_chr12_59591029_59794841	0/0	a0005	478	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	a0006	478	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	a0007	478	1	1	0	0	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A7_chr12_59591029_59794841	0/0	a0008	478	1	0	0	1	0	0	copy fasta	SLC16A7	chr12	59591029	59794841
SLC16A8_chr22_38073137_38089184	0/0	a0000	0	2	2	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/1	a0001	504	176	41	27	93	5	9	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0002	504	158	50	19	70	2	17	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	1/0	a0003	504	86	2	25	32	8	18	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0004	504	7	0	4	0	3	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0005	504	4	0	0	4	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0006	504	4	0	0	0	0	4	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0007	504	2	0	0	2	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0008	504	2	0	0	2	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0009	504	2	0	2	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0010	504	2	0	0	2	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0011	504	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0012	504	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0013	504	1	0	0	1	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0014	504	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0015	500	1	0	1	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0016	504	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A8_chr22_38073137_38089184	0/0	a0017	504	1	1	0	0	0	0	copy fasta	SLC16A8	chr22	38073137	38089184
SLC16A9_chr10_59645764_59714850	1/0	a0001	509	232	79	51	72	11	18	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	a0002	509	101	4	18	65	1	13	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	a0003	509	9	8	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/1	a0004	509	5	0	0	0	1	3	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	a0005	509	1	0	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	a0006	509	1	0	1	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	a0007	509	1	0	0	0	1	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	a0008	509	1	0	0	1	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC16A9_chr10_59645764_59714850	0/0	a0009	509	1	1	0	0	0	0	copy fasta	SLC16A9	chr10	59645764	59714850
SLC17A1_chr6_25777915_25837052	0/1	a0001	467	252	67	49	103	7	25	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	1/0	a0002	467	85	12	19	33	7	13	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	a0003	467	6	6	0	0	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	a0004	457	2	2	0	0	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	a0005	467	1	1	0	0	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	a0006	467	1	0	0	1	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A1_chr6_25777915_25837052	0/0	a0007	467	1	0	0	1	0	0	copy fasta	SLC17A1	chr6	25777915	25837052
SLC17A2_chr6_25907754_25935691	1/1	a0001	478	378	96	65	158	14	43	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	a0002	478	1	0	0	0	0	1	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A2_chr6_25907754_25935691	0/0	a0003	478	1	0	1	0	0	0	copy fasta	SLC17A2	chr6	25907754	25935691
SLC17A3_chr6_25839856_25879243	1/0	a0001	498	267	60	55	116	10	25	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	a0002	498	65	31	8	19	1	6	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/1	a0003	498	17	1	3	1	3	8	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	a0004	498	14	1	0	13	0	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	a0005	498	1	0	0	0	0	1	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	a0006	498	1	0	0	1	0	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	a0007	498	1	0	0	1	0	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	a0008	498	1	0	0	1	0	0	copy fasta	SLC17A3	chr6	25839856	25879243
SLC17A3_chr6_25839856_25879243	0/0	a0009	171	1	1	0	0	0	0	copy fasta	SLC17A3	chr6	25839856	25879243