JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATXN3_chr14_92053552_92111582	0/0	a0049	343	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0050	336	1	0	0	0	0	1	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0051	365	1	0	1	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0052	381	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0053	382	1	1	0	0	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN3_chr14_92053552_92111582	0/0	a0054	374	1	0	0	1	0	0	copy fasta	ATXN3	chr14	92053552	92111582
ATXN7L1_chr7_105599772_105881599	1/1	a0001	861	238	58	59	88	9	22	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	a0002	861	8	7	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	a0003	861	2	1	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	a0004	861	1	0	0	0	1	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	a0005	861	1	0	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	a0006	861	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	a0007	861	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L2_chr1_109478905_109497734	1/1	a0001	754	312	86	58	114	12	40	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	a0002	754	14	10	2	0	2	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	a0003	754	1	1	0	0	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	a0004	754	1	0	0	1	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	a0005	754	1	0	0	1	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	a0006	754	1	0	0	1	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	a0007	754	1	1	0	0	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	a0008	132	1	0	0	1	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L3B_chr12_74532835_74550430	1/1	a0001	97	408	96	72	184	10	44	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3_chr17_44186805_44204884	1/1	a0001	347	380	94	66	166	14	38	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7_chr3_63858867_64008462	1/1	a0001	892	107	23	21	45	5	11	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0002	892	75	24	5	40	2	4	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0003	894	25	1	5	13	1	5	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0004	893	17	14	2	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0005	894	17	0	5	12	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0006	893	8	3	1	4	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0007	889	6	2	0	4	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0008	892	6	0	1	5	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0009	893	5	5	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0010	891	4	4	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0011	892	3	0	0	3	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0012	895	3	3	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0013	893	3	3	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0014	893	2	1	0	0	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0015	889	2	0	0	2	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0016	892	2	1	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0017	892	2	0	0	1	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0018	894	2	0	1	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0019	895	2	0	2	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0020	889	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0021	891	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0022	892	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0023	892	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0024	896	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0025	895	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0026	897	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	a0027	896	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462