JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC30A2_chr1_26032252_26051118	0/0	a0003	372	1	1	0	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A2_chr1_26032252_26051118	0/0	a0004	372	1	1	0	0	0	0	copy fasta	SLC30A2	chr1	26032252	26051118
SLC30A3_chr2_27248684_27268047	1/1	a0001	388	317	84	70	113	16	32	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	a0002	388	1	0	0	0	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	a0003	388	1	0	0	0	0	1	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A3_chr2_27248684_27268047	0/0	a0004	388	1	0	0	1	0	0	copy fasta	SLC30A3	chr2	27248684	27268047
SLC30A4_chr15_45474606_45527755	1/1	a0001	429	317	86	58	137	4	30	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A4_chr15_45474606_45527755	0/0	a0002	429	1	0	0	1	0	0	copy fasta	SLC30A4	chr15	45474606	45527755
SLC30A5_chr5_69089014_69136069	1/1	a0001	765	403	94	70	183	14	40	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	a0002	765	3	0	0	3	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	a0003	765	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A5_chr5_69089014_69136069	0/0	a0004	765	1	1	0	0	0	0	copy fasta	SLC30A5	chr5	69089014	69136069
SLC30A6_chr2_32160864_32229379	1/1	a0001	461	368	88	69	166	14	29	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	a0002	461	3	0	0	3	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	a0003	461	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	a0004	461	1	0	1	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	a0005	461	1	0	0	0	0	1	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	a0006	461	1	1	0	0	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A6_chr2_32160864_32229379	0/0	a0007	461	1	0	0	1	0	0	copy fasta	SLC30A6	chr2	32160864	32229379
SLC30A7_chr1_100891090_100986757	1/1	a0001	376	220	70	33	68	12	35	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	a0002	376	1	0	1	0	0	0	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A7_chr1_100891090_100986757	0/0	a0003	376	1	0	0	0	0	1	copy fasta	SLC30A7	chr1	100891090	100986757
SLC30A8_chr8_117129995_117181714	1/1	a0001	369	223	72	37	76	10	26	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	a0002	369	83	5	20	50	6	2	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	a0003	369	20	9	1	10	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	a0004	369	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A8_chr8_117129995_117181714	0/0	a0005	369	1	1	0	0	0	0	copy fasta	SLC30A8	chr8	117129995	117181714
SLC30A9_chr4_41985530_42095461	0/0	a0001	568	106	64	19	9	2	12	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/1	a0002	568	48	8	10	13	4	12	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	1/0	a0003	568	8	4	1	2	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	a0004	568	1	1	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC30A9_chr4_41985530_42095461	0/0	a0005	568	1	1	0	0	0	0	copy fasta	SLC30A9	chr4	41985530	42095461
SLC31A1_chr9_113216544_113269492	1/1	a0001	190	411	81	66	206	14	42	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A1_chr9_113216544_113269492	0/0	a0002	190	7	7	0	0	0	0	copy fasta	SLC31A1	chr9	113216544	113269492
SLC31A2_chr9_113146007_113169140	1/1	a0001	143	456	91	78	229	16	40	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	a0002	143	1	0	0	1	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC31A2_chr9_113146007_113169140	0/0	a0003	143	1	1	0	0	0	0	copy fasta	SLC31A2	chr9	113146007	113169140
SLC32A1_chr20_38719486_38734372	1/1	a0001	525	418	75	76	199	18	48	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	a0002	525	9	9	0	0	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	a0003	525	2	0	0	0	0	2	copy fasta	SLC32A1	chr20	38719486	38734372
SLC32A1_chr20_38719486_38734372	0/0	a0004	525	1	0	0	1	0	0	copy fasta	SLC32A1	chr20	38719486	38734372
SLC33A1_chr3_155816024_155859427	1/1	a0001	549	330	80	78	120	12	38	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	a0002	549	56	16	6	27	2	5	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	a0003	549	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	a0004	549	1	1	0	0	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	a0005	549	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	a0006	549	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	a0007	549	1	0	0	1	0	0	copy fasta	SLC33A1	chr3	155816024	155859427
SLC33A1_chr3_155816024_155859427	0/0	a0008	549	1	0	0	0	0	1	copy fasta	SLC33A1	chr3	155816024	155859427
SLC34A1_chr5_177379434_177403848	1/1	a0001	639	414	86	72	191	16	47	copy fasta	SLC34A1	chr5	177379434	177403848