JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC6A5_chr11_20594608_20664285	0/0	a0012	797	3	3	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0013	797	3	3	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0014	797	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0015	797	2	2	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0016	797	1	0	1	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0017	797	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0018	797	1	0	0	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0019	797	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0020	797	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0021	797	1	0	0	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0022	797	1	0	0	0	0	1	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0023	797	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A5_chr11_20594608_20664285	0/0	a0024	797	1	1	0	0	0	0	copy fasta	SLC6A5	chr11	20594608	20664285
SLC6A6_chr3_14397606_14494349	1/1	a0001	620	361	91	67	142	14	45	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	a0002	620	7	7	0	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	a0003	620	6	0	6	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	a0004	620	1	0	0	0	0	1	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A6_chr3_14397606_14494349	0/0	a0005	620	1	0	1	0	0	0	copy fasta	SLC6A6	chr3	14397606	14494349
SLC6A7_chr5_150185062_150216063	0/1	a0001	636	451	92	80	214	18	46	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0002	636	4	0	0	4	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0003	636	3	3	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0004	636	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0005	636	1	0	0	0	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0006	636	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	1/0	a0007	636	1	0	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0008	636	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0009	636	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0010	636	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0011	636	1	1	0	0	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0012	636	1	0	0	1	0	0	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A7_chr5_150185062_150216063	0/0	a0013	636	1	0	0	0	0	1	copy fasta	SLC6A7	chr5	150185062	150216063
SLC6A8_chrX_153682926_153701588	1/1	a0001	635	285	76	54	109	10	34	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	a0002	635	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	a0003	295	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	a0004	306	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	a0005	557	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A8_chrX_153682926_153701588	0/0	a0006	615	1	0	0	1	0	0	copy fasta	SLC6A8	chrX	153682926	153701588
SLC6A9_chr1_43991483_44036462	1/1	a0001	633	382	93	67	172	10	38	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	a0002	633	2	1	1	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	a0003	633	1	1	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	a0004	633	1	1	0	0	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	a0005	633	1	0	0	1	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC6A9_chr1_43991483_44036462	0/0	a0006	633	1	0	0	1	0	0	copy fasta	SLC6A9	chr1	43991483	44036462
SLC7A10_chr19_33203664_33230850	0/0	a0000	0	1	0	1	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	1/1	a0001	523	383	76	69	170	18	48	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	a0002	523	23	22	1	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	a0003	523	1	0	1	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	a0004	523	1	1	0	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A10_chr19_33203664_33230850	0/0	a0005	523	1	1	0	0	0	0	copy fasta	SLC7A10	chr19	33203664	33230850
SLC7A11_chr4_138159097_138247349	1/1	a0001	501	354	90	62	154	16	30	copy fasta	SLC7A11	chr4	138159097	138247349