JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLC7A11_chr4_138159097_138247349	0/0	a0002	501	5	0	0	4	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	a0003	48	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	a0004	501	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	a0005	501	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	a0006	501	1	0	0	0	0	1	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A11_chr4_138159097_138247349	0/0	a0007	501	1	0	1	0	0	0	copy fasta	SLC7A11	chr4	138159097	138247349
SLC7A13_chr8_86209063_86235381	0/0	a0000	0	95	4	12	58	0	21	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	1/0	a0001	470	216	53	40	100	5	17	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/1	a0002	470	70	15	13	33	1	7	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0003	470	24	12	6	2	1	3	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0004	470	12	11	1	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0005	470	3	1	1	0	1	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0006	62	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0007	470	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0008	470	1	0	0	0	0	1	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0009	470	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0010	470	1	0	0	0	0	1	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0011	470	1	1	0	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0012	382	1	0	1	0	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A13_chr8_86209063_86235381	0/0	a0013	470	1	0	0	1	0	0	copy fasta	SLC7A13	chr8	86209063	86235381
SLC7A14_chr3_170454548_170591075	1/1	a0001	771	280	63	50	112	12	41	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	a0002	771	15	15	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	a0003	771	4	3	1	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	a0004	771	4	0	0	4	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	a0005	771	1	1	0	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	a0006	771	1	0	1	0	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	a0007	771	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	a0008	771	1	0	0	1	0	0	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A14_chr3_170454548_170591075	0/0	a0009	771	1	0	0	0	0	1	copy fasta	SLC7A14	chr3	170454548	170591075
SLC7A1_chr13_29504414_29600688	1/1	a0001	629	325	92	62	124	14	31	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	a0002	629	4	4	0	0	0	0	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A1_chr13_29504414_29600688	0/0	a0003	629	1	0	0	0	0	1	copy fasta	SLC7A1	chr13	29504414	29600688
SLC7A2_chr8_17492088_17575566	1/1	a0001	658	365	94	73	136	15	45	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	a0002	658	64	0	1	60	0	3	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	a0003	658	10	1	2	7	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	a0004	658	5	1	4	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	a0005	658	2	0	0	2	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	a0006	658	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	a0007	658	1	0	0	0	1	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	a0008	658	1	1	0	0	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A2_chr8_17492088_17575566	0/0	a0009	658	1	0	0	1	0	0	copy fasta	SLC7A2	chr8	17492088	17575566
SLC7A3_chrX_70920579_70936096	1/0	a0001	619	159	31	34	62	9	22	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/1	a0002	619	144	47	26	62	1	7	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	a0003	619	1	0	0	0	0	1	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	a0004	558	1	1	0	0	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	a0005	619	1	0	0	0	1	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	a0006	548	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	a0007	619	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	a0008	619	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096
SLC7A3_chrX_70920579_70936096	0/0	a0009	539	1	0	0	1	0	0	copy fasta	SLC7A3	chrX	70920579	70936096