JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLFN5_chr17_35238072_35278655	0/0	a0015	891	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFN5_chr17_35238072_35278655	0/0	a0016	891	1	1	0	0	0	0	copy fasta	SLFN5	chr17	35238072	35278655
SLFNL1_chr1_41010597_41026725	1/0	a0001	407	293	78	41	132	12	29	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0002	230	41	6	2	27	0	6	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0003	407	32	0	6	26	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0004	407	23	0	11	8	2	2	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0005	230	11	1	3	5	0	2	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0006	407	9	1	2	1	2	3	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0007	230	5	0	2	3	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/1	a0008	407	4	1	1	0	0	1	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0009	407	2	0	2	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0010	407	2	0	0	0	1	1	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0011	407	1	0	1	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0012	83	1	0	0	0	1	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0013	407	1	0	0	1	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0014	230	1	0	0	1	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0015	230	1	1	0	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0016	407	1	0	1	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0017	230	1	0	1	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLFNL1_chr1_41010597_41026725	0/0	a0018	407	1	0	1	0	0	0	copy fasta	SLFNL1	chr1	41010597	41026725
SLIRP_chr14_77703103_77722598	1/1	a0001	109	403	95	66	184	18	38	copy fasta	SLIRP	chr14	77703103	77722598
SLIRP_chr14_77703103_77722598	0/0	a0002	109	1	1	0	0	0	0	copy fasta	SLIRP	chr14	77703103	77722598
SLIT1_chr10_96993038_97190959	1/1	a0001	1534	247	87	38	80	8	32	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	a0002	1534	4	0	2	0	2	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	a0003	1534	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	a0004	1534	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	a0005	1534	1	0	0	1	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	a0006	1534	1	1	0	0	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT1_chr10_96993038_97190959	0/0	a0007	1534	1	0	0	1	0	0	copy fasta	SLIT1	chr10	96993038	97190959
SLIT2_chr4_20246905_20625561	1/1	a0001	1529	223	68	57	54	10	32	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	a0002	1529	2	0	2	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	a0003	1529	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	a0004	1529	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	a0005	1529	1	1	0	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	a0006	1529	1	0	0	1	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT2_chr4_20246905_20625561	0/0	a0007	1529	1	0	1	0	0	0	copy fasta	SLIT2	chr4	20246905	20625561
SLIT3_chr5_168656740_169306139	0/0	a0001	1523	74	37	13	18	1	5	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0002	1523	40	15	8	12	1	4	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0003	1523	4	1	1	1	0	1	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0004	1523	3	3	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0005	1523	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0006	1523	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0007	1523	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0008	1523	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0009	1523	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0010	1523	1	0	1	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0011	1523	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0012	1523	1	1	0	0	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0013	1523	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139
SLIT3_chr5_168656740_169306139	0/0	a0014	1523	1	0	0	1	0	0	copy fasta	SLIT3	chr5	168656740	169306139