JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
SLK_chr10_103962140_104034233	0/0	a0004	1235	6	5	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0005	1235	4	1	2	0	1	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0006	1235	2	0	0	0	0	2	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0007	1235	2	0	0	2	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0008	1235	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0009	1235	1	0	0	1	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0010	1235	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0011	1235	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0012	1235	1	0	0	1	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0013	1235	1	0	1	0	0	0	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0014	1235	1	0	0	0	0	1	copy fasta	SLK	chr10	103962140	104034233
SLK_chr10_103962140_104034233	0/0	a0015	1235	1	0	0	1	0	0	copy fasta	SLK	chr10	103962140	104034233
SLMAP_chr3_57751309_57935003	1/1	a0001	842	306	76	59	125	10	34	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	a0002	842	2	0	0	2	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	a0003	842	1	0	0	1	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLMAP_chr3_57751309_57935003	0/0	a0004	842	1	0	1	0	0	0	copy fasta	SLMAP	chr3	57751309	57935003
SLN_chr11_107702378_107717056	1/1	a0001	31	410	94	70	190	14	40	copy fasta	SLN	chr11	107702378	107717056
SLPI_chr20_45247239_45259564	1/1	a0001	132	396	96	78	168	10	42	copy fasta	SLPI	chr20	45247239	45259564
SLPI_chr20_45247239_45259564	0/0	a0002	132	2	0	2	0	0	0	copy fasta	SLPI	chr20	45247239	45259564
SLTM_chr15_58874050_58938679	1/1	a0001	1034	384	92	68	167	18	37	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	a0002	1034	1	0	0	0	0	1	copy fasta	SLTM	chr15	58874050	58938679
SLTM_chr15_58874050_58938679	0/0	a0003	1034	1	0	0	1	0	0	copy fasta	SLTM	chr15	58874050	58938679
SLU7_chr5_160396641_160424081	0/1	a0001	586	231	37	48	108	7	30	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	1/0	a0002	586	215	53	27	121	4	9	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	a0003	586	8	2	4	0	0	2	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	a0004	586	5	0	4	0	1	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	a0005	586	1	0	1	0	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	a0006	586	1	0	0	1	0	0	copy fasta	SLU7	chr5	160396641	160424081
SLU7_chr5_160396641_160424081	0/0	a0007	586	1	0	0	0	0	1	copy fasta	SLU7	chr5	160396641	160424081
SLURP1_chr8_142735949_142747406	0/0	a0000	0	2	2	0	0	0	0	copy fasta	SLURP1	chr8	142735949	142747406
SLURP1_chr8_142735949_142747406	1/1	a0001	103	399	92	72	177	18	38	copy fasta	SLURP1	chr8	142735949	142747406
SLURP1_chr8_142735949_142747406	0/0	a0002	108	1	0	0	1	0	0	copy fasta	SLURP1	chr8	142735949	142747406
SLURP2_chr8_142759338_142774828	1/1	a0001	97	440	88	83	205	18	44	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	a0002	97	5	4	1	0	0	0	copy fasta	SLURP2	chr8	142759338	142774828
SLURP2_chr8_142759338_142774828	0/0	a0003	97	1	0	0	1	0	0	copy fasta	SLURP2	chr8	142759338	142774828
SLX1A_chr16_30188875_30202561	0/0	a0001	275	186	47	25	92	8	14	copy fasta	SLX1A	chr16	30188875	30202561
SLX1A_chr16_30188875_30202561	0/0	a0002	275	5	5	0	0	0	0	copy fasta	SLX1A	chr16	30188875	30202561
SLX1A_chr16_30188875_30202561	0/0	a0003	163	1	0	0	0	0	1	copy fasta	SLX1A	chr16	30188875	30202561
SLX1A_chr16_30188875_30202561	0/0	a0004	275	1	0	0	0	0	1	copy fasta	SLX1A	chr16	30188875	30202561
SLX1A_chr16_30188875_30202561	0/0	a0005	275	1	0	1	0	0	0	copy fasta	SLX1A	chr16	30188875	30202561
SLX1B_chr16_29449533_29463219	0/0	a0001	275	170	26	18	106	6	14	copy fasta	SLX1B	chr16	29449533	29463219
SLX1B_chr16_29449533_29463219	0/0	a0002	275	2	2	0	0	0	0	copy fasta	SLX1B	chr16	29449533	29463219
SLX1B_chr16_29449533_29463219	0/0	a0003	275	1	0	0	1	0	0	copy fasta	SLX1B	chr16	29449533	29463219
SLX1B_chr16_29449533_29463219	0/0	a0004	275	1	0	0	1	0	0	copy fasta	SLX1B	chr16	29449533	29463219
SLX4IP_chr20_10430305_10633030	1/1	a0001	408	244	65	55	93	8	21	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	a0002	408	9	0	8	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	a0003	408	4	0	0	4	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	a0004	408	3	2	1	0	0	0	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	a0005	408	3	0	2	0	0	1	copy fasta	SLX4IP	chr20	10430305	10633030
SLX4IP_chr20_10430305_10633030	0/0	a0006	408	1	0	0	1	0	0	copy fasta	SLX4IP	chr20	10430305	10633030